Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 73476377
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|73476377 LBXCOR1 homolog [Homo sapiens]
(921 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|73476377 LBXCOR1 homolog [Homo sapiens] 1905 0.0
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 537 e-152
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 537 e-152
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 537 e-152
gi|4506967 v-ski sarcoma viral oncogene homolog [Homo sapiens] 125 2e-28
gi|223029422 SKI-like isoform 3 [Homo sapiens] 109 1e-23
gi|223029420 SKI-like isoform 2 [Homo sapiens] 109 1e-23
gi|223029418 SKI-like isoform 1 [Homo sapiens] 109 1e-23
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 94 6e-19
gi|55750053 atrophin-1 [Homo sapiens] 86 2e-16
gi|55750041 atrophin-1 [Homo sapiens] 86 2e-16
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 84 6e-16
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 84 6e-16
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 84 8e-16
gi|48762934 alpha 2 type I collagen [Homo sapiens] 83 1e-15
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 82 2e-15
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 81 5e-15
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 81 5e-15
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 81 5e-15
gi|163965366 nascent polypeptide-associated complex alpha subuni... 80 7e-15
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 80 9e-15
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 79 1e-14
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 78 4e-14
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 78 4e-14
gi|110832843 TBP-associated factor 4 [Homo sapiens] 77 1e-13
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 74 6e-13
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 74 6e-13
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 74 6e-13
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 73 1e-12
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 73 1e-12
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 1905 bits (4934), Expect = 0.0
Identities = 921/921 (100%), Positives = 921/921 (100%)
Query: 1 MALLCGLGQVTLRIWVSLPSQSENGIGSGGMEALTTQLGPGREGSSSPNSKQELQPYSGS 60
MALLCGLGQVTLRIWVSLPSQSENGIGSGGMEALTTQLGPGREGSSSPNSKQELQPYSGS
Sbjct: 1 MALLCGLGQVTLRIWVSLPSQSENGIGSGGMEALTTQLGPGREGSSSPNSKQELQPYSGS 60
Query: 61 SALKPNQVGETSLYGVPIVSLVIDGQERLCLAQISNTLLKNYSYNEIHNRRVALGITCVQ 120
SALKPNQVGETSLYGVPIVSLVIDGQERLCLAQISNTLLKNYSYNEIHNRRVALGITCVQ
Sbjct: 61 SALKPNQVGETSLYGVPIVSLVIDGQERLCLAQISNTLLKNYSYNEIHNRRVALGITCVQ 120
Query: 121 CTPVQLEILRRAGAMPISSRRCGMITKREAERLCKSFLGEHKPPKLPENFAFDVVHECAW 180
CTPVQLEILRRAGAMPISSRRCGMITKREAERLCKSFLGEHKPPKLPENFAFDVVHECAW
Sbjct: 121 CTPVQLEILRRAGAMPISSRRCGMITKREAERLCKSFLGEHKPPKLPENFAFDVVHECAW 180
Query: 181 GSRGSFIPARYNSSRAKCIKCGYCSMYFSPNKFIFHSHRTPDAKYTQPDAANFNSWRRHL 240
GSRGSFIPARYNSSRAKCIKCGYCSMYFSPNKFIFHSHRTPDAKYTQPDAANFNSWRRHL
Sbjct: 181 GSRGSFIPARYNSSRAKCIKCGYCSMYFSPNKFIFHSHRTPDAKYTQPDAANFNSWRRHL 240
Query: 241 KLSDKSATDELSHAWEDVKAMFNGGTRCGAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHP 300
KLSDKSATDELSHAWEDVKAMFNGGTRCGAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHP
Sbjct: 241 KLSDKSATDELSHAWEDVKAMFNGGTRCGAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHP 300
Query: 301 QRGLGLATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFG 360
QRGLGLATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFG
Sbjct: 301 QRGLGLATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFG 360
Query: 361 LCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQ 420
LCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQ
Sbjct: 361 LCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQ 420
Query: 421 PSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAA 480
PSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAA
Sbjct: 421 PSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAA 480
Query: 481 AAAAGSGAPEPLDGAEPAKESGLGAEERCPSALSRGPLDEDGTDEALPPPLAPLPPPPPP 540
AAAAGSGAPEPLDGAEPAKESGLGAEERCPSALSRGPLDEDGTDEALPPPLAPLPPPPPP
Sbjct: 481 AAAAGSGAPEPLDGAEPAKESGLGAEERCPSALSRGPLDEDGTDEALPPPLAPLPPPPPP 540
Query: 541 PARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSS 600
PARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSS
Sbjct: 541 PARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSS 600
Query: 601 SYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPPSATSSG 660
SYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPPSATSSG
Sbjct: 601 SYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPPSATSSG 660
Query: 661 ADGPANSPDGGSPRPRRRLGPPPAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGP 720
ADGPANSPDGGSPRPRRRLGPPPAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGP
Sbjct: 661 ADGPANSPDGGSPRPRRRLGPPPAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGP 720
Query: 721 LGGPAPAKVFAPERDEHVKSAAVALGPAASYVCTPEAHEPDKEDNHSPADDLETRKSYPD 780
LGGPAPAKVFAPERDEHVKSAAVALGPAASYVCTPEAHEPDKEDNHSPADDLETRKSYPD
Sbjct: 721 LGGPAPAKVFAPERDEHVKSAAVALGPAASYVCTPEAHEPDKEDNHSPADDLETRKSYPD 780
Query: 781 QRSISQPSPANTDRGEDGLTLDVTGTHLVEKDIENLAREELQKLLLEQMELRKKLEREFQ 840
QRSISQPSPANTDRGEDGLTLDVTGTHLVEKDIENLAREELQKLLLEQMELRKKLEREFQ
Sbjct: 781 QRSISQPSPANTDRGEDGLTLDVTGTHLVEKDIENLAREELQKLLLEQMELRKKLEREFQ 840
Query: 841 SLKDNFQDQMKRELAYREEMVQQLQIVRDTLCNELDQERKARYAIQQKLKEAHDALHHFS 900
SLKDNFQDQMKRELAYREEMVQQLQIVRDTLCNELDQERKARYAIQQKLKEAHDALHHFS
Sbjct: 841 SLKDNFQDQMKRELAYREEMVQQLQIVRDTLCNELDQERKARYAIQQKLKEAHDALHHFS 900
Query: 901 CKMLTPRHCTGNCSFKPPLLP 921
CKMLTPRHCTGNCSFKPPLLP
Sbjct: 901 CKMLTPRHCTGNCSFKPPLLP 921
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 537 bits (1384), Expect = e-152
Identities = 411/1009 (40%), Positives = 475/1009 (47%), Gaps = 288/1009 (28%)
Query: 55 QPYSGSSALKPNQVGETSLYGVPIVSLVIDGQERLCLAQISNTLLKNYSYNEIHNRRVAL 114
QP G + LKPNQVG+ LYG+PIVSLVIDGQERLCLAQISNTLLKN+SYNEIHNRRVAL
Sbjct: 28 QPRPGHANLKPNQVGQVILYGIPIVSLVIDGQERLCLAQISNTLLKNFSYNEIHNRRVAL 87
Query: 115 GITCVQCTPVQLEILRRAGAMPISSRRCGMITKREAERLCKSFLGEHKPPKLPENFAFDV 174
GITCVQCTPVQLEILRRAGAMPISSRRCGMITKREAERLCKSFLGE++PPKLP+NFAFDV
Sbjct: 88 GITCVQCTPVQLEILRRAGAMPISSRRCGMITKREAERLCKSFLGENRPPKLPDNFAFDV 147
Query: 175 VHECAWGSRGSFIPARYNSSRAKCIKCGYCSMYFSPNKFIFHSHRTPDAKYTQPDAANFN 234
HECAWG RGSFIPARYNSSRAKCIKC YC+MYFSPNKFIFHSHRTPDAKYTQPDAANFN
Sbjct: 148 SHECAWGCRGSFIPARYNSSRAKCIKCSYCNMYFSPNKFIFHSHRTPDAKYTQPDAANFN 207
Query: 235 SWRRHLKLSDKSATDELSHAWEDVKAMFNGGTRCGAEMAPGPPPH----KSLRCGEDEAA 290
SWRRHLKL+DKS DEL AWEDVKAMFNGG+R A PG P S++ AA
Sbjct: 208 SWRRHLKLTDKSPQDELVFAWEDVKAMFNGGSRKRALPQPGAHPACHPLSSVKAAAVAAA 267
Query: 291 G-----------------PPGPPPPHPQRGLGLA-------------------------- 307
PP PPPP P L A
Sbjct: 268 AAVAGGGGLLGPHLLGAPPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAA 327
Query: 308 -----------TGASGPAGPGGPGGGAGV---------------------RSYPVIPVPS 335
ASG AG GG G G G RSYPVIPVPS
Sbjct: 328 SLSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPS 387
Query: 336 KGF--GLLQKLP--PPLFPHPYGFP---TAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGA 388
KG G+LQK P LFPHPY FP AF LC KK+D G GG GA
Sbjct: 388 KGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSLCHKKED--------AGAAAEALGGAGA 439
Query: 389 GTGGGAGGPGASHLPPGAGAGPGGG--AMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPM 446
G GAGA P G +FW P+G KDA YP F M
Sbjct: 440 G---------------GAGAAPKAGLSGLFW---PAG-RKDA-----------FYPPFCM 469
Query: 447 FWP--AAGSLPVPSY------------------PAAQSQAKAVAAAVAAAAAAAAAA--- 483
FWP G LPVP+Y PA QA A AA +A AA
Sbjct: 470 FWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPP 529
Query: 484 ----------AGSGAPEPLDGA---EPAKESGLGAEERCPSALSRGPLDE-----DGTDE 525
GSG P P GA + ES G SA S P D G
Sbjct: 530 GQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAAA 589
Query: 526 ALPPPLAPLPPPPPPP-------ARKGSY--VSAFRPV--VKDTESIAKLYGSAREAYGA 574
A P P P P A GSY SAFRPV D ES+AKL+G++ A +
Sbjct: 590 AGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHS 649
Query: 575 G-----------------------------PARGPGPGAGSGGYVSP------------- 592
P + PG+ P
Sbjct: 650 AQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQ 709
Query: 593 -----DFLSEGSSSYNSASPDV-----DTADEPEVDVESNRFPDDEDAQEETEPSAPSAG 642
LS G +S + S D D +E EVDVE ++ P+ E+ +E G
Sbjct: 710 HPHHRGLLSPGGTSCSYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEE---------G 760
Query: 643 GGPDGEQPTGPPSATSSGADGPANSPDGGSPRPRRRLGPPPAGRPAFGDLAAEDLVRRPE 702
PD ++ + G P G R + GP G ++ D
Sbjct: 761 RDPDDDEEEDEETEVLLG------DPLVGGGRFLQGRGPSEKG-------SSRDRAPAVA 807
Query: 703 RSPPSGGGGYELREPCGPLGGPA------PAKVFAPERDEHVKSAAVALGPAASYVCTPE 756
+ P G L + G LG P P AP++ A G +S +P
Sbjct: 808 GAFPLGLNSSRLLQEDGKLGDPGSDLPPPPPPPLAPQK---------ASGGGSSSPGSP- 857
Query: 757 AHEPDKEDNHSPADDLETRK------SYPDQRSISQPSPAN----TDRGEDG-------- 798
H P E+ S D +T++ S D S S + + TD G
Sbjct: 858 VHHPSLEEQPSYKDSQKTKENNQVIVSTKDDNSFSDKNKEHSFFITDSDASGGDFWRERS 917
Query: 799 --LTLDVTGTHLVEKDIENLAREELQKLLLEQMELRKKLEREFQSLKDN 845
T + H ++KD+EN+ +EELQK+L EQ++LR++LE+EFQ LK N
Sbjct: 918 GEHTQETNSPHSLKKDVENMGKEELQKVLFEQIDLRRRLEQEFQVLKGN 966
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 537 bits (1383), Expect = e-152
Identities = 410/1009 (40%), Positives = 476/1009 (47%), Gaps = 288/1009 (28%)
Query: 55 QPYSGSSALKPNQVGETSLYGVPIVSLVIDGQERLCLAQISNTLLKNYSYNEIHNRRVAL 114
QP G + LKPNQVG+ LYG+PIVSLVIDGQERLCLAQISNTLLKN+SYNEIHNRRVAL
Sbjct: 28 QPRPGHANLKPNQVGQVILYGIPIVSLVIDGQERLCLAQISNTLLKNFSYNEIHNRRVAL 87
Query: 115 GITCVQCTPVQLEILRRAGAMPISSRRCGMITKREAERLCKSFLGEHKPPKLPENFAFDV 174
GITCVQCTPVQLEILRRAGAMPISSRRCGMITKREAERLCKSFLGE++PPKLP+NFAFDV
Sbjct: 88 GITCVQCTPVQLEILRRAGAMPISSRRCGMITKREAERLCKSFLGENRPPKLPDNFAFDV 147
Query: 175 VHECAWGSRGSFIPARYNSSRAKCIKCGYCSMYFSPNKFIFHSHRTPDAKYTQPDAANFN 234
HECAWG RGSFIPARYNSSRAKCIKC YC+MYFSPNKFIFHSHRTPDAKYTQPDAANFN
Sbjct: 148 SHECAWGCRGSFIPARYNSSRAKCIKCSYCNMYFSPNKFIFHSHRTPDAKYTQPDAANFN 207
Query: 235 SWRRHLKLSDKSATDELSHAWEDVKAMFNGGTRCGAEMAPGPPPH----KSLRCGEDEAA 290
SWRRHLKL+DKS DEL AWEDVKAMFNGG+R A PG P S++ AA
Sbjct: 208 SWRRHLKLTDKSPQDELVFAWEDVKAMFNGGSRKRALPQPGAHPACHPLSSVKAAAVAAA 267
Query: 291 G-----------------PPGPPPPHPQRGLGLA-------------------------- 307
PP PPPP P L A
Sbjct: 268 AAVAGGGGLLGPHLLGAPPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAA 327
Query: 308 -----------TGASGPAGPGGPGGGAGV---------------------RSYPVIPVPS 335
ASG AG GG G G G RSYPVIPVPS
Sbjct: 328 SLSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPS 387
Query: 336 KGF--GLLQKLP--PPLFPHPYGFP---TAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGA 388
KG G+LQK P LFPHPY FP AF LC KK+D G GG GA
Sbjct: 388 KGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSLCHKKED--------AGAAAEALGGAGA 439
Query: 389 GTGGGAGGPGASHLPPGAGAGPGGG--AMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPM 446
G GAGA P G +FW P+G KDA YP F M
Sbjct: 440 G---------------GAGAAPKAGLSGLFW---PAG-RKDA-----------FYPPFCM 469
Query: 447 FWP--AAGSLPVPSY------------------PAAQSQAKAVAAAVAAAAAAAAAA--- 483
FWP G LPVP+Y PA QA A AA +A AA
Sbjct: 470 FWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPP 529
Query: 484 ----------AGSGAPEPLDGA---EPAKESGLGAEERCPSALSRGPLDE-----DGTDE 525
GSG P P GA + ES G SA S P D G
Sbjct: 530 GQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAAA 589
Query: 526 ALPPPLAPLPPPPPPP-------ARKGSY--VSAFRPV--VKDTESIAKLYGSAREAYGA 574
A P P P P A GSY SAFRPV D ES+AKL+G++ A +
Sbjct: 590 AGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHS 649
Query: 575 G-----------------------------PARGPGPGAGSGGYVSP------------- 592
P + PG+ P
Sbjct: 650 AQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQ 709
Query: 593 -----DFLSEGSS-----SYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAG 642
LS G + S +S+ + D +E EVDVE ++ P+ E+ +E G
Sbjct: 710 HPHHRGLLSPGGTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEE---------G 760
Query: 643 GGPDGEQPTGPPSATSSGADGPANSPDGGSPRPRRRLGPPPAGRPAFGDLAAEDLVRRPE 702
PD ++ + G P G R + GP G ++ D
Sbjct: 761 RDPDDDEEEDEETEVLLG------DPLVGGGRFLQGRGPSEKG-------SSRDRAPAVA 807
Query: 703 RSPPSGGGGYELREPCGPLGGPA------PAKVFAPERDEHVKSAAVALGPAASYVCTPE 756
+ P G L + G LG P P AP++ A G +S +P
Sbjct: 808 GAFPLGLNSSRLLQEDGKLGDPGSDLPPPPPPPLAPQK---------ASGGGSSSPGSP- 857
Query: 757 AHEPDKEDNHSPADDLETRK------SYPDQRSISQPSPAN----TDRGEDG-------- 798
H P E+ S D +T++ S D S S + + TD G
Sbjct: 858 VHHPSLEEQPSYKDSQKTKENNQVIVSTKDDNSFSDKNKEHSFFITDSDASGGDFWRERS 917
Query: 799 --LTLDVTGTHLVEKDIENLAREELQKLLLEQMELRKKLEREFQSLKDN 845
T + H ++KD+EN+ +EELQK+L EQ++LR++LE+EFQ LK N
Sbjct: 918 GEHTQETNSPHSLKKDVENMGKEELQKVLFEQIDLRRRLEQEFQVLKGN 966
Score = 33.9 bits (76), Expect = 0.72
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 867 VRDTLCNELDQERKARYAIQQKLKE 891
+RD LC++ DQERKA QQKLK+
Sbjct: 1094 IRDPLCSKFDQERKAWRPSQQKLKD 1118
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 537 bits (1383), Expect = e-152
Identities = 410/1009 (40%), Positives = 476/1009 (47%), Gaps = 288/1009 (28%)
Query: 55 QPYSGSSALKPNQVGETSLYGVPIVSLVIDGQERLCLAQISNTLLKNYSYNEIHNRRVAL 114
QP G + LKPNQVG+ LYG+PIVSLVIDGQERLCLAQISNTLLKN+SYNEIHNRRVAL
Sbjct: 28 QPRPGHANLKPNQVGQVILYGIPIVSLVIDGQERLCLAQISNTLLKNFSYNEIHNRRVAL 87
Query: 115 GITCVQCTPVQLEILRRAGAMPISSRRCGMITKREAERLCKSFLGEHKPPKLPENFAFDV 174
GITCVQCTPVQLEILRRAGAMPISSRRCGMITKREAERLCKSFLGE++PPKLP+NFAFDV
Sbjct: 88 GITCVQCTPVQLEILRRAGAMPISSRRCGMITKREAERLCKSFLGENRPPKLPDNFAFDV 147
Query: 175 VHECAWGSRGSFIPARYNSSRAKCIKCGYCSMYFSPNKFIFHSHRTPDAKYTQPDAANFN 234
HECAWG RGSFIPARYNSSRAKCIKC YC+MYFSPNKFIFHSHRTPDAKYTQPDAANFN
Sbjct: 148 SHECAWGCRGSFIPARYNSSRAKCIKCSYCNMYFSPNKFIFHSHRTPDAKYTQPDAANFN 207
Query: 235 SWRRHLKLSDKSATDELSHAWEDVKAMFNGGTRCGAEMAPGPPPH----KSLRCGEDEAA 290
SWRRHLKL+DKS DEL AWEDVKAMFNGG+R A PG P S++ AA
Sbjct: 208 SWRRHLKLTDKSPQDELVFAWEDVKAMFNGGSRKRALPQPGAHPACHPLSSVKAAAVAAA 267
Query: 291 G-----------------PPGPPPPHPQRGLGLA-------------------------- 307
PP PPPP P L A
Sbjct: 268 AAVAGGGGLLGPHLLGAPPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAA 327
Query: 308 -----------TGASGPAGPGGPGGGAGV---------------------RSYPVIPVPS 335
ASG AG GG G G G RSYPVIPVPS
Sbjct: 328 SLSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPS 387
Query: 336 KGF--GLLQKLP--PPLFPHPYGFP---TAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGA 388
KG G+LQK P LFPHPY FP AF LC KK+D G GG GA
Sbjct: 388 KGSFGGVLQKFPGCGGLFPHPYTFPAAAAAFSLCHKKED--------AGAAAEALGGAGA 439
Query: 389 GTGGGAGGPGASHLPPGAGAGPGGG--AMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPM 446
G GAGA P G +FW P+G KDA YP F M
Sbjct: 440 G---------------GAGAAPKAGLSGLFW---PAG-RKDA-----------FYPPFCM 469
Query: 447 FWP--AAGSLPVPSY------------------PAAQSQAKAVAAAVAAAAAAAAAA--- 483
FWP G LPVP+Y PA QA A AA +A AA
Sbjct: 470 FWPPRTPGGLPVPTYLQPPPQPPSALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPP 529
Query: 484 ----------AGSGAPEPLDGA---EPAKESGLGAEERCPSALSRGPLDE-----DGTDE 525
GSG P P GA + ES G SA S P D G
Sbjct: 530 GQPPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSGGDCSAGSTPPADSVAAAGAGAAA 589
Query: 526 ALPPPLAPLPPPPPPP-------ARKGSY--VSAFRPV--VKDTESIAKLYGSAREAYGA 574
A P P P P A GSY SAFRPV D ES+AKL+G++ A +
Sbjct: 590 AGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVGGKDDAESLAKLHGASAGAPHS 649
Query: 575 G-----------------------------PARGPGPGAGSGGYVSP------------- 592
P + PG+ P
Sbjct: 650 AQTHPHHHHHPHHHHHHHHPPQPPSPLLLLPPQPDEPGSERHHPAPPPPPPPPPPPPLAQ 709
Query: 593 -----DFLSEGSS-----SYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAG 642
LS G + S +S+ + D +E EVDVE ++ P+ E+ +E G
Sbjct: 710 HPHHRGLLSPGGTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEE---------G 760
Query: 643 GGPDGEQPTGPPSATSSGADGPANSPDGGSPRPRRRLGPPPAGRPAFGDLAAEDLVRRPE 702
PD ++ + G P G R + GP G ++ D
Sbjct: 761 RDPDDDEEEDEETEVLLG------DPLVGGGRFLQGRGPSEKG-------SSRDRAPAVA 807
Query: 703 RSPPSGGGGYELREPCGPLGGPA------PAKVFAPERDEHVKSAAVALGPAASYVCTPE 756
+ P G L + G LG P P AP++ A G +S +P
Sbjct: 808 GAFPLGLNSSRLLQEDGKLGDPGSDLPPPPPPPLAPQK---------ASGGGSSSPGSP- 857
Query: 757 AHEPDKEDNHSPADDLETRK------SYPDQRSISQPSPAN----TDRGEDG-------- 798
H P E+ S D +T++ S D S S + + TD G
Sbjct: 858 VHHPSLEEQPSYKDSQKTKENNQVIVSTKDDNSFSDKNKEHSFFITDSDASGGDFWRERS 917
Query: 799 --LTLDVTGTHLVEKDIENLAREELQKLLLEQMELRKKLEREFQSLKDN 845
T + H ++KD+EN+ +EELQK+L EQ++LR++LE+EFQ LK N
Sbjct: 918 GEHTQETNSPHSLKKDVENMGKEELQKVLFEQIDLRRRLEQEFQVLKGN 966
Score = 33.9 bits (76), Expect = 0.72
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 867 VRDTLCNELDQERKARYAIQQKLKE 891
+RD LC++ DQERKA QQKLK+
Sbjct: 1094 IRDPLCSKFDQERKAWRPSQQKLKD 1118
>gi|4506967 v-ski sarcoma viral oncogene homolog [Homo sapiens]
Length = 728
Score = 125 bits (314), Expect = 2e-28
Identities = 84/248 (33%), Positives = 126/248 (50%), Gaps = 25/248 (10%)
Query: 70 ETSLYGVPIVSLVIDGQERLCLAQISNTLLKNYSYNEIHNRRVALGITCVQCTPVQLEIL 129
ET L G I V+ G++RLCL QI N++L+++S +I+ L I C +CT QLEIL
Sbjct: 102 ETVLEGETISCFVVGGEKRLCLPQILNSVLRDFSLQQINAVCDELHIYCSRCTADQLEIL 161
Query: 130 RRAGAMPISSRRCGMITKREAERLCKSFL--GEHKPP---KLPENFAFD---------VV 175
+ G +P S+ CG+ITK +AERLC + L G + PP +L + A V
Sbjct: 162 KVMGILPFSAPSCGLITKTDAERLCNALLYGGAYPPPCKKELAASLALGLELSERSVRVY 221
Query: 176 HECAWGSRGSFIPARYNSSRAKCIKCGYCSMYFSPNKFIFHSHRTPDAK--YTQPDAANF 233
HEC +G +P Y+S A CI+C C + + P+KF+ HSH+ + + + D+AN
Sbjct: 222 HECFGKCKGLLVPELYSSPSAACIQCLDCRLMYPPHKFVVHSHKALENRTCHWGFDSAN- 280
Query: 234 NSWRRHLKLSD----KSATDELSHAWEDVKAMFNGGTRCGAEM--APGPPPHKSLRCGED 287
WR ++ LS K L +DVK F+ G + + PP +D
Sbjct: 281 --WRAYILLSQDYTGKEEQARLGRCLDDVKEKFDYGNKYKRRVPRVSSEPPASIRPKTDD 338
Query: 288 EAAGPPGP 295
++ P P
Sbjct: 339 TSSQSPAP 346
>gi|223029422 SKI-like isoform 3 [Homo sapiens]
Length = 664
Score = 109 bits (272), Expect = 1e-23
Identities = 60/175 (34%), Positives = 92/175 (52%), Gaps = 20/175 (11%)
Query: 67 QVGETSLYGVPIVSLVIDGQERLCLAQISNTLLKNYSYNEIHNRRVALGITCVQCTPVQL 126
++ +T L G I + G++RLCL Q+ N++L+ ++ +I+ L I C +CT QL
Sbjct: 123 ELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQL 182
Query: 127 EILRRAGAMPISSRRCGMITKREAERLCKSFLGEHKPPKLPEN----------------- 169
IL+ G +P ++ CG+IT +A+RLC + L +P P+N
Sbjct: 183 HILKVLGILPFNAPSCGLITLTDAQRLCNALL---RPRTFPQNGSVLPAKSSLAQLKETG 239
Query: 170 FAFDVVHECAWGSRGSFIPARYNSSRAKCIKCGYCSMYFSPNKFIFHSHRTPDAK 224
AF+V HEC +G F P Y A CI+C C F+P F+ HSHR+PD +
Sbjct: 240 SAFEVEHECLGKCQGLFAPQFYVQPDAPCIQCLECCGMFAPQTFVMHSHRSPDKR 294
Score = 40.0 bits (92), Expect = 0.010
Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 10/93 (10%)
Query: 809 VEKDIENLAREELQKL---LLEQMELRKKLEREFQ-------SLKDNFQDQMKRELAYRE 858
++K++E+L E Q++ +EQ +L KKLE+ + +L+ + + + +LA
Sbjct: 558 LQKELESLQNEHAQRMEEFYVEQKDLEKKLEQIMKQKCTCDSNLEKDKEAEYAGQLAELR 617
Query: 859 EMVQQLQIVRDTLCNELDQERKARYAIQQKLKE 891
+ + + R L +EL QER+AR ++ +KE
Sbjct: 618 QRLDHAEADRQELQDELRQEREARQKLEMMIKE 650
>gi|223029420 SKI-like isoform 2 [Homo sapiens]
Length = 638
Score = 109 bits (272), Expect = 1e-23
Identities = 60/175 (34%), Positives = 92/175 (52%), Gaps = 20/175 (11%)
Query: 67 QVGETSLYGVPIVSLVIDGQERLCLAQISNTLLKNYSYNEIHNRRVALGITCVQCTPVQL 126
++ +T L G I + G++RLCL Q+ N++L+ ++ +I+ L I C +CT QL
Sbjct: 143 ELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQL 202
Query: 127 EILRRAGAMPISSRRCGMITKREAERLCKSFLGEHKPPKLPEN----------------- 169
IL+ G +P ++ CG+IT +A+RLC + L +P P+N
Sbjct: 203 HILKVLGILPFNAPSCGLITLTDAQRLCNALL---RPRTFPQNGSVLPAKSSLAQLKETG 259
Query: 170 FAFDVVHECAWGSRGSFIPARYNSSRAKCIKCGYCSMYFSPNKFIFHSHRTPDAK 224
AF+V HEC +G F P Y A CI+C C F+P F+ HSHR+PD +
Sbjct: 260 SAFEVEHECLGKCQGLFAPQFYVQPDAPCIQCLECCGMFAPQTFVMHSHRSPDKR 314
Score = 40.0 bits (92), Expect = 0.010
Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 10/93 (10%)
Query: 809 VEKDIENLAREELQKL---LLEQMELRKKLEREFQ-------SLKDNFQDQMKRELAYRE 858
++K++E+L E Q++ +EQ +L KKLE+ + +L+ + + + +LA
Sbjct: 532 LQKELESLQNEHAQRMEEFYVEQKDLEKKLEQIMKQKCTCDSNLEKDKEAEYAGQLAELR 591
Query: 859 EMVQQLQIVRDTLCNELDQERKARYAIQQKLKE 891
+ + + R L +EL QER+AR ++ +KE
Sbjct: 592 QRLDHAEADRQELQDELRQEREARQKLEMMIKE 624
>gi|223029418 SKI-like isoform 1 [Homo sapiens]
Length = 684
Score = 109 bits (272), Expect = 1e-23
Identities = 60/175 (34%), Positives = 92/175 (52%), Gaps = 20/175 (11%)
Query: 67 QVGETSLYGVPIVSLVIDGQERLCLAQISNTLLKNYSYNEIHNRRVALGITCVQCTPVQL 126
++ +T L G I + G++RLCL Q+ N++L+ ++ +I+ L I C +CT QL
Sbjct: 143 ELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQL 202
Query: 127 EILRRAGAMPISSRRCGMITKREAERLCKSFLGEHKPPKLPEN----------------- 169
IL+ G +P ++ CG+IT +A+RLC + L +P P+N
Sbjct: 203 HILKVLGILPFNAPSCGLITLTDAQRLCNALL---RPRTFPQNGSVLPAKSSLAQLKETG 259
Query: 170 FAFDVVHECAWGSRGSFIPARYNSSRAKCIKCGYCSMYFSPNKFIFHSHRTPDAK 224
AF+V HEC +G F P Y A CI+C C F+P F+ HSHR+PD +
Sbjct: 260 SAFEVEHECLGKCQGLFAPQFYVQPDAPCIQCLECCGMFAPQTFVMHSHRSPDKR 314
Score = 40.0 bits (92), Expect = 0.010
Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 10/93 (10%)
Query: 809 VEKDIENLAREELQKL---LLEQMELRKKLEREFQ-------SLKDNFQDQMKRELAYRE 858
++K++E+L E Q++ +EQ +L KKLE+ + +L+ + + + +LA
Sbjct: 578 LQKELESLQNEHAQRMEEFYVEQKDLEKKLEQIMKQKCTCDSNLEKDKEAEYAGQLAELR 637
Query: 859 EMVQQLQIVRDTLCNELDQERKARYAIQQKLKE 891
+ + + R L +EL QER+AR ++ +KE
Sbjct: 638 QRLDHAEADRQELQDELRQEREARQKLEMMIKE 670
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 94.0 bits (232), Expect = 6e-19
Identities = 150/509 (29%), Positives = 181/509 (35%), Gaps = 68/509 (13%)
Query: 245 KSATDELSHAWEDVKAMFNGGTRCGAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGL 304
+S TD+ + E K G T P PP + G+ GPPGPP P GL
Sbjct: 100 ESPTDQETTGVEGPK----GDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGL 155
Query: 305 G-------------LATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPPLFPH 351
G +TG GP GP G G+ P P P +GF PP P
Sbjct: 156 GGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGP-QGF-----QGPPGEP- 208
Query: 352 PYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGG-----GAGGPGASHLPPGA 406
G P A G +G P G PG G AG G G GP + PG
Sbjct: 209 --GEPGASG--------PMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGT 258
Query: 407 GAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQA 466
PG GH+ + D A A A P P A G + P + +
Sbjct: 259 AGLPG----MKGHR-GFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRP 313
Query: 467 KAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEERCPSALSRGPLDEDGTDEA 526
A A A A AAG P G P +GA+ A +GP +G
Sbjct: 314 GAPGPAGARGNDGATGAAGPPGPTGPAG-PPGFPGAVGAK---GEAGPQGPRGSEGPQGV 369
Query: 527 LPPPLAPLPPPPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGS 586
P P P PA G+ + +P K + G A G ARGP G
Sbjct: 370 RGEPGPPGPAGAAGPA--GNPGADGQPGAKGANGAPGIAG----APGFPGARGPSGPQGP 423
Query: 587 GGYVSPDFLSEGSSSYNSASPDVDTADEP-EVDVESNRFPDDEDAQE--ETEPSAPSAGG 643
GG P + G + D EP V V+ P E+ + EP P+
Sbjct: 424 GGPPGPKG-NSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEP-GPTGLP 481
Query: 644 GPDGEQPTGPPSATSSGADGPA--NSPDG--GSPRPRRRLGPP-PAGRPAFGDL-AAEDL 697
GP GE+ GP S GADG A P G GSP P G P AGRP L A+ L
Sbjct: 482 GPPGER-GGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGL 540
Query: 698 VRRPERSPPSGGGGYELREPCGPLGGPAP 726
P P G G P G G P P
Sbjct: 541 TGSPGSPGPDGKTGPP--GPAGQDGRPGP 567
Score = 91.3 bits (225), Expect = 4e-18
Identities = 133/490 (27%), Positives = 156/490 (31%), Gaps = 106/490 (21%)
Query: 267 RCGAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVR 326
+ G PGPP G+D AG GPP P +GPAG G G AG
Sbjct: 594 KAGERGVPGPPGAVG-PAGKDGEAGAQGPPGP------------AGPAGERGEQGPAGSP 640
Query: 327 SYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDP----VLGAGEPKGGPGTG 382
+ +P P+ G K P G P G ++ P V G P G G
Sbjct: 641 GFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGAN 700
Query: 383 SGGGGAGTGGGAGGPGA--SHLPPGAGAGPG--GGAMFWGHQ-------PSGAAKDAAAV 431
G G G AG PGA S PG PG G A G + P GA
Sbjct: 701 GAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKD 760
Query: 432 AAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEP 491
+ P P P PS PA + A+ A AG P
Sbjct: 761 GVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGAR--GAPGDRGEPGPPGPAGFAGPPG 818
Query: 492 LDGAEPAKESGLGAEERCPSALSRGPLDEDGTDEALPP-PLAPLPPPPP-----PPARKG 545
DG AK P D +A PP P P PP P P KG
Sbjct: 819 ADGQPGAKGE---------------PGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKG 863
Query: 546 SYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSA 605
+ SA P A G + AGP PGP GG
Sbjct: 864 ARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGG----------------- 906
Query: 606 SPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPPSATSS-GADGP 664
+ + ET P+ GP G P GP S GADGP
Sbjct: 907 ----------------------KGPRGETGPAGRPGEVGPPG--PPGPAGEKGSPGADGP 942
Query: 665 ANSPDGGSPRPRRRLG-------PPPAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREP 717
A +P G+P P+ G P G F L P + PSG G R P
Sbjct: 943 AGAP--GTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPS--GEPGKQGPSGASGE--RGP 996
Query: 718 CGPLGGPAPA 727
GP+G P A
Sbjct: 997 PGPMGPPGLA 1006
Score = 83.2 bits (204), Expect = 1e-15
Identities = 138/481 (28%), Positives = 166/481 (34%), Gaps = 52/481 (10%)
Query: 273 APGPPPHKSLRC--GEDEAAGPPGPPPPHPQRGLGLATGASGPAG-PGGPG--GGAGVRS 327
APGP + R GE GPPGP P G GA G AG PG PG G G++
Sbjct: 669 APGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQG 728
Query: 328 YPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPG-TGSGG- 385
P G LP P P P KD V G P G PG G+ G
Sbjct: 729 MP-------GERGAAGLPGPKGDRGDAGPKGADGSPGKDG-VRGLTGPIGPPGPAGAPGD 780
Query: 386 -GGAGTGGGAGGPGASHLPPGAGA-GPGGGAMFWGHQPSGAAKDAAAVAA---AAAAATV 440
G +G G AG GA P G GP G A F G P GA A A A
Sbjct: 781 KGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAG--PPGADGQPGAKGEPGDAGAKGDA 838
Query: 441 YPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKE 500
P P PA P+ + A ++ +A A AA G P P A P
Sbjct: 839 GPPGPA-GPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGP 897
Query: 501 SGLGAEERCPSALSRGPLDEDGTDEALPPPLAPLPPPPPPPARKGSYVS---AFRPVVKD 557
G +E +GP E G P + P P PP P KGS + A P
Sbjct: 898 PGPAGKEG-----GKGPRGETGP-AGRPGEVGP-PGPPGPAGEKGSPGADGPAGAPGTPG 950
Query: 558 TESIAKLYG-----SAREAYG----AGPARGPG---PGAGSGGYVSPDFLSEGSSSYNSA 605
+ IA G R G GP+ PG P SG P + +
Sbjct: 951 PQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPG 1010
Query: 606 SPDVDTADEPEVDVESNRFPDDEDAQEETEPSAP-SAGGGPDGEQPTGPPSATSS-GADG 663
+ A E + P + + ET P+ P A G P P GP + G G
Sbjct: 1011 ESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETG 1070
Query: 664 PANSPDGGSPRPRRRLGPPPAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGPLGG 723
PA P R P R G+ + +R G L+ P GP G
Sbjct: 1071 PAGPAGPVGPVGARGPAGPQGPRGDKGETGEQG-----DRGIKGHRGFSGLQGPPGPPGS 1125
Query: 724 P 724
P
Sbjct: 1126 P 1126
Score = 82.0 bits (201), Expect = 2e-15
Identities = 140/493 (28%), Positives = 164/493 (33%), Gaps = 62/493 (12%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGG---AGV 325
G APGP + G AAGPPGP P G A GA G AGP GP G GV
Sbjct: 311 GRPGAPGPAGARG-NDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGV 369
Query: 326 RSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGG 385
R P P P+ G P G A G+ P GA P G G G
Sbjct: 370 RGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFP--GARGPSGPQGPGGPP 427
Query: 386 GGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFP 445
G G G G PG S GA PG + P A ++ A T P P
Sbjct: 428 GPKGNSGEPGAPG-SKGDTGAKGEPGPVGV--QGPPGPAGEEGKRGARGEPGPTGLPGPP 484
Query: 446 MFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGA 505
GS +P A A A + A GS P + P + GA
Sbjct: 485 GERGGPGS---RGFPGADGVAGPKGPAGERGSPGPAGPKGS----PGEAGRPGEAGLPGA 537
Query: 506 EERCPSALSRGPLDEDGTDEALPPPLAPLPPPPPP----------PARKGSY-------- 547
+ S S GP + G P PP PP P KG+
Sbjct: 538 KGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGE 597
Query: 548 ------VSAFRPVVKDTESIAK----LYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSE 597
A P KD E+ A+ G A E GPA PG G G P E
Sbjct: 598 RGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPG-FQGLPGPAGPP--GE 654
Query: 598 GSSSYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAP-SAGGGPDGEQPTGPPSA 656
P A P FP + Q P+ P A G P + G A
Sbjct: 655 AGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKG--DA 712
Query: 657 TSSGADGPANSPD-GGSPRPRRRLG-PPPAGRPAFGDLAAEDLVRRPERSPPSGGGGYEL 714
+ GA G +P G P R G P P G GD + + SP G +
Sbjct: 713 GAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDR--GDAGP----KGADGSPGKDG----V 762
Query: 715 REPCGPLGGPAPA 727
R GP+G P PA
Sbjct: 763 RGLTGPIGPPGPA 775
Score = 79.0 bits (193), Expect = 2e-14
Identities = 141/531 (26%), Positives = 169/531 (31%), Gaps = 69/531 (12%)
Query: 262 FNGGTRCGAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGG 321
F G PG PP GE A G G + G G GPAG G G
Sbjct: 411 FPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRG 470
Query: 322 GAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLC----PKKDDPVLGAGEPKG 377
G +P P G P GFP A G+ P + G PKG
Sbjct: 471 ARGEPGPTGLPGPPGERG---------GPGSRGFPGADGVAGPKGPAGERGSPGPAGPKG 521
Query: 378 GPGTGSGGGGAGTGGGAGGPGASHLP-PGAGAGPGGGAMFWGHQ----PSGAAKDAAAVA 432
PG G AG G G G+ P P GP G A G P GA A +
Sbjct: 522 SPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMG 581
Query: 433 -AAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAG------ 485
A P AG VP P A A A A A AG
Sbjct: 582 FPGPKGAAGEP------GKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQG 635
Query: 486 -SGAP--EPLDG-AEPAKESGLGAEERCPSAL-SRGPLDEDGTDEALPPPLAPLPPPPP- 539
+G+P + L G A P E+G E+ P L + GP G + P PP P
Sbjct: 636 PAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARG-ERGFPGERGVQGPPGPA 694
Query: 540 -------PPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSP 592
P G+ A P ++ L G E GA GP G G
Sbjct: 695 GPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGER-GAAGLPGPKGDRGDAGPKGA 753
Query: 593 DFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPS-AGGGPDGEQPT 651
D S G + + P D+ + P+ P+ A G P
Sbjct: 754 DG-SPGKDGVRGLTGPIGPPGPAGA-------PGDKGESGPSGPAGPTGARGAPGDRGEP 805
Query: 652 GPPS----ATSSGADG-PANSPDGGSPRPRRRLGPP----PAGRPA-FGDLAAEDLVRRP 701
GPP A GADG P + G + GPP PAG P G++ A
Sbjct: 806 GPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGAR 865
Query: 702 ERSPPSGGGGYELRE----PCGPLGGPAPAKVFAPERDEHVKSAAVALGPA 748
+ P G G+ P GP G P P E K GPA
Sbjct: 866 GSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPA 916
Score = 75.1 bits (183), Expect = 3e-13
Identities = 146/527 (27%), Positives = 167/527 (31%), Gaps = 92/527 (17%)
Query: 269 GAEMAPGP-----PPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGA 323
G APGP PP + G GP GPP P + G G G G GP G
Sbjct: 191 GPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQ 250
Query: 324 GVRSYP-VIPVPS----KGFGLLQKLPPPLFP-HPYGFPTAFGLCPKKDDPVLGAGEPKG 377
G R P +P +GF L P P G P + G ++ G P+G
Sbjct: 251 GARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPG-----ENGAPGQMGPRG 305
Query: 378 GPGTGSGGGGAGTGGGAGGPGASHL--PPGAGAGPGGGAMFWG----HQPSGAAKDAAAV 431
PG G G G G GA+ PPG GP G F G +G +
Sbjct: 306 LPGERGRPGAPGPAGARGNDGATGAAGPPGP-TGPAGPPGFPGAVGAKGEAGPQGPRGSE 364
Query: 432 AAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPE- 490
P P AG+ P A Q A A A A A G+ P
Sbjct: 365 GPQGVRGEPGPPGP-----AGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSG 419
Query: 491 PLDGAEPAKESGLGAEERCPSALS----------------RGPLDEDGTDEALPPPLAPL 534
P P G E P + GP E+G A P P
Sbjct: 420 PQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEP-GPT 478
Query: 535 PPPPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPG-PG-AGSGGYVSP 592
P PP R G F + +A G A E GPA G PG AG G
Sbjct: 479 GLPGPPGERGGPGSRGF----PGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGL 534
Query: 593 DFLSEGSSSYNSASPDVDTADEPEVDVESNRFP-----------------------DDED 629
+ S S PD T + P +
Sbjct: 535 PGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGK 594
Query: 630 AQEETEPSAPSAGG--GPDGEQ-PTGPPS----ATSSGADGPANSPD-GGSPRPRRRLGP 681
A E P P A G G DGE GPP A G GPA SP G P P GP
Sbjct: 595 AGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGP---AGP 651
Query: 682 P-PAGRPAF----GDLAAE-DLVRRPERSPPSGGGGYELREPCGPLG 722
P AG+P GDL A R ER P G P GP G
Sbjct: 652 PGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRG 698
Score = 63.9 bits (154), Expect = 6e-10
Identities = 89/308 (28%), Positives = 106/308 (34%), Gaps = 76/308 (24%)
Query: 285 GEDEAAGPPGPPPPHPQRGLGLATGASGPAG-PGGPG--------------GGAGVRSYP 329
G GPPGPP P ++G + GA GPAG PG PG G G R +P
Sbjct: 917 GRPGEVGPPGPPGPAGEKG---SPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFP 973
Query: 330 VIPVPSKGFGLL-------QKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGT- 381
+P PS G ++ PP P G P G P + GA +G PG
Sbjct: 974 GLPGPSGEPGKQGPSGASGERGPPG----PMGPPGLAG--PPGESGREGAPGAEGSPGRD 1027
Query: 382 GSGG--GGAGTGGGAGGPGASHLPPGAG-AGPGGGAMFWGHQ-PSGAAKDAAAVAAAAAA 437
GS G G G G AG PGA P G GP G + G P+G A V A A
Sbjct: 1028 GSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPA 1087
Query: 438 ATVYPTFPM----------------FWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAA 481
P F G P P Q + A A +A
Sbjct: 1088 GPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSA 1147
Query: 482 AAAG----SGAPEPLDGAEPAKESGLGAEERCPSALSRGPLDEDGTDEALPPPLAPLPPP 537
A G +G P P+ P +G GP+ PP P PP
Sbjct: 1148 GAPGKDGLNGLPGPIGPPGPRGRTG-----------DAGPVG---------PPGPPGPPG 1187
Query: 538 PPPPARKG 545
PP P G
Sbjct: 1188 PPGPPSAG 1195
Score = 51.6 bits (122), Expect = 3e-06
Identities = 66/187 (35%), Positives = 72/187 (38%), Gaps = 46/187 (24%)
Query: 269 GAEMAPG---PPPHKSLRCGEDEAAGPPGPP----PPHPQRGLGLA--TGASGPAGPGGP 319
GAE +PG P K R GE AGPPG P P P G + G +GPAGP GP
Sbjct: 1019 GAEGSPGRDGSPGAKGDR-GETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGP 1077
Query: 320 GGGAGVR--SYPVIPVPSK---------------GFGLLQKLP-PPLFP----------- 350
G G R + P P K GF LQ P PP P
Sbjct: 1078 VGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGP 1137
Query: 351 -HPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAG 409
P G P + G P KD + G P G PG G AG G G PG PPG
Sbjct: 1138 AGPRGPPGSAG-APGKDG-LNGLPGPIGPPGPRGRTGDAGPVGPPGPPG----PPGPPGP 1191
Query: 410 PGGGAMF 416
P G F
Sbjct: 1192 PSAGFDF 1198
Score = 38.5 bits (88), Expect = 0.029
Identities = 30/81 (37%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
Query: 269 GAEMAPGP--PPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVR 326
GA GP PP + G+D G PGP P RG G GP GP GP G G
Sbjct: 1133 GASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPG-- 1190
Query: 327 SYPVIPVPSKGFGLLQKLPPP 347
PS GF PP
Sbjct: 1191 ------PPSAGFDFSFLPQPP 1205
Score = 37.4 bits (85), Expect = 0.065
Identities = 46/163 (28%), Positives = 54/163 (33%), Gaps = 23/163 (14%)
Query: 269 GAEMAPGP--PPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVR 326
G PGP PP + GE G PG + G + GA G G GP G G
Sbjct: 992 GERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDG---SPGAKGDRGETGPAGPPGAP 1048
Query: 327 SYPVIP---VPSKGFGLLQKLPPPLFPHPYGFPTAFGLC----PKKDDPVLGAGEPKG-- 377
P P P+ G + P P G A G P+ D G +G
Sbjct: 1049 GAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIK 1108
Query: 378 ---------GPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPG 411
GP G G GA GP PPG+ PG
Sbjct: 1109 GHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPG 1151
Score = 36.6 bits (83), Expect = 0.11
Identities = 40/134 (29%), Positives = 51/134 (38%), Gaps = 21/134 (15%)
Query: 625 PDDEDA---QEETEPSAPSAGGGPDGEQ-PTGPPSATSSGADGPANSPD-GGSPRPRRRL 679
PD ++ QE T P GP G + P GPP G DG P G P P
Sbjct: 96 PDGSESPTDQETTGVEGPKGDTGPRGPRGPAGPP-----GRDGIPGQPGLPGPPGPPGPP 150
Query: 680 GPPPAG-----RPAFG-DLAAEDLVRRPERSPPSGGGGYELREPCGPLGGPAPAKVFAPE 733
GPP G + ++G D + + P PSG G GP G P P P
Sbjct: 151 GPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLP-----GPPGAPGPQGFQGPP 205
Query: 734 RDEHVKSAAVALGP 747
+ A+ +GP
Sbjct: 206 GEPGEPGASGPMGP 219
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 85.5 bits (210), Expect = 2e-16
Identities = 172/709 (24%), Positives = 245/709 (34%), Gaps = 155/709 (21%)
Query: 292 PPGPPPPHPQRGLGLATGA-SGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPPLFP 350
PPG PPPHPQ G G SGP P GP GG S + P+ G ++ PPP P
Sbjct: 209 PPGAPPPHPQLYPGGTGGVLSGP--PMGPKGGGAASS---VGGPNGG----KQHPPPTTP 259
Query: 351 HPYGFPTAFGLCPKK--DDPVLGAGEPKGGPGTG----------------SGGGGAGTGG 392
A G P K PV G P P A G
Sbjct: 260 ISVSSSGASGAPPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASASPPG 319
Query: 393 GAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAG 452
P HLP G G G + P G K T+ P+ PA+
Sbjct: 320 LGAQPLPGHLPSPHAMGQGMGGL-----PPGPEK----------GPTLAPSPHSLPPASS 364
Query: 453 SLPVP--SYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEERCP 510
S P P +P + S + + AAA++++++++ S +P P A P+ P
Sbjct: 365 SAPAPPMRFPYSSSSSSS-----AAASSSSSSSSSSASPFPASQALPSYPHSFPP----P 415
Query: 511 SALSRGPLDEDGTDEALPPPL--APLPPPPPP---------------PARKGSYVSAFRP 553
++LS T +LP + PPPPPP P G+ +A P
Sbjct: 416 TSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRLLANSNAHPGPFPPSTGAQSTAHPP 475
Query: 554 V--------VKDTESIAKLYGSAREAYGAGPARGPGPGA-------GSGGYVSPDFLSEG 598
V + + + ++ G + P PGA GS + P +S
Sbjct: 476 VSTHHHHHQQQQQQQQQQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGSSHHAHPYAMSPS 535
Query: 599 SSSYNSASPDVDTADEPEVD------------VESNRFPDDEDAQEETEPSAPSAGGGPD 646
S P P V S+ +Q S PS GP
Sbjct: 536 LGSLRPYPPGPAHLPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQGPQ 595
Query: 647 GEQ---PTGPPSATSSG---------ADGPAN----SPDGGSPRPRRRLGP-------PP 683
G P P TSS A PA SP G P +R P PP
Sbjct: 596 GAPYPFPPVPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPP 655
Query: 684 AGRPAFGDLAAEDLVRRP---ERSPPSGGGGYELREPCGPLGGPAPAKVFAPERDEHV-- 738
+P G + P SPP+G G + +P P GP P P +
Sbjct: 656 GYKP--GSPPSFRTGTPPGYRGTSPPAGPGTF---KPGSPTVGPGPLPPAGPSGLPSLPP 710
Query: 739 KSAAVALGPAASYVCTPEAHEPDKEDNHSPADDLETRKS-YPDQRSISQPSPANTDRGED 797
AA A GP S + PA++ ET +S P RS S P P D
Sbjct: 711 PPAAPASGPPLSAT----------QIKQEPAEEYETPESPVPPARSPS-PPPKVVDVPSH 759
Query: 798 GLTLDVTGTHLVEKDIENLAREELQKLLLEQMELRKKLEREFQSLKDNFQDQMKRELAYR 857
HL ++ + AR +L + LE +L KK + + ++++RE R
Sbjct: 760 ASQSARFNKHL-DRGFNSCARSDLYFVPLEGSKLAKK--------RADLVEKVRREAEQR 810
Query: 858 EEMVQQLQIVRDTLCNELDQERKARYAIQQKLKEAHDALHHFSCKMLTP 906
++ + R+ E ++ER+ +++ +K A + C L P
Sbjct: 811 AREEKERERERE---REKEREREKERELERSVKLAQEGRAPVECPSLGP 856
Score = 50.4 bits (119), Expect = 7e-06
Identities = 78/323 (24%), Positives = 109/323 (33%), Gaps = 60/323 (18%)
Query: 493 DGAEPAKESGLGAEERCPSALSRGPLDEDGTDEA----------LPPPLAPLPPPPPPPA 542
DG+ ++ PS S G ++ D + PPPL P P P PP +
Sbjct: 116 DGSSDPRDIDQDNRSTSPSIYSPGSVENDSDSSSGLSQGPARPYHPPPLFP-PSPQPPDS 174
Query: 543 RKGSYVSAFRP--VVKDTESIAKLYGSAREAYGAGPARGPG-----PGAGSGGYVS-PDF 594
++F P V T A + + A P P PG G+GG +S P
Sbjct: 175 TPRQPEASFEPHPSVTPTGYHAPMEPPTSRMFQAPPGAPPPHPQLYPG-GTGGVLSGPPM 233
Query: 595 LSEGSSSYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPP 654
+G + +S P T P + S+ G G PT PP
Sbjct: 234 GPKGGGAASSVGGPNGGKQHPP----------------PTTPISVSSSGA-SGAPPTKPP 276
Query: 655 SATSSGADGPANSPDGGSPRPRRRLGPPPAGRPAFGDLAAEDLVRRPERSPPSGG----- 709
+ G + P+ P P L PPPA RP + SPP G
Sbjct: 277 TTPVGGGNLPSAPPPANFPHVTPNLPPPPALRP----------LNNASASPPGLGAQPLP 326
Query: 710 GGYELREPCGP-LGGPAPAKVFAPERDEHVKSAAVALGPAASYVCTPEAHEPDKEDNHSP 768
G G +GG P PE+ + + +L PA+S P P + S
Sbjct: 327 GHLPSPHAMGQGMGGLPP----GPEKGPTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSS 382
Query: 769 ADDLETRKSYPDQRSISQPSPAN 791
A S S + P PA+
Sbjct: 383 A---AASSSSSSSSSSASPFPAS 402
Score = 49.7 bits (117), Expect = 1e-05
Identities = 118/478 (24%), Positives = 153/478 (32%), Gaps = 80/478 (16%)
Query: 276 PPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPVP- 334
PPPH + + AGP GPP + S P P G YP PVP
Sbjct: 550 PPPHSQVSYSQ---AGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPT 606
Query: 335 -SKGFGLLQKLPPPLFPHPYGFPTAFGLCPK---KDDPVLGAGEPKGGPG---------- 380
+ L + + P G+ TA P K P GA + PG
Sbjct: 607 VTTSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGSPPSFR 666
Query: 381 TGSGGGGAGT----GGGAGGPGASHLPPG--AGAGPGGGAMFWGHQPSGAAKDAAAVAAA 434
TG+ G GT G G PG+ + PG AGP G PS AA +
Sbjct: 667 TGTPPGYRGTSPPAGPGTFKPGSPTVGPGPLPPAGPSG-------LPSLPPPPAAPASGP 719
Query: 435 AAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAA----------AAAA 484
+AT P PVP + K V A+ +A + A
Sbjct: 720 PLSATQIKQEPAEEYETPESPVPPARSPSPPPKVVDVPSHASQSARFNKHLDRGFNSCAR 779
Query: 485 GSGAPEPLDGAEPAKESG-------LGAEERCPSALSRG--------------------- 516
PL+G++ AK+ AE+R R
Sbjct: 780 SDLYFVPLEGSKLAKKRADLVEKVRREAEQRAREEKEREREREREKEREREKERELERSV 839
Query: 517 PLDEDGTDEALPPPLAPLPPPPPPPARKGSYVSAFRPVV-KDTESIAKLYGSAREAYGAG 575
L ++G P L P+ P PP GS V+ P + DT ++ L AR +
Sbjct: 840 KLAQEGRAPVECPSLGPV--PHRPPFEPGSAVATVPPYLGPDTPALRTLSEYAR-PHVMS 896
Query: 576 PARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTADEP--EVDVESNRFPDDEDAQEE 633
P P G V P L + S+ P + E D+ P E E
Sbjct: 897 PGNRNHPFYVPLGAVDPGLLGYNVPALYSSDPAAREREREARERDLRDRLKPGFEVKPSE 956
Query: 634 TEPSAPSAGGGPDGEQPTGPPSATSSGADG----PANSPDGGSPRPRRRLGPPPAGRP 687
EP G G D P A G G P + G R R L PA RP
Sbjct: 957 LEPLHGVPGPGLD-PFPRHGGLALQPGPPGLHPFPFHPSLGPLERERLALAAGPALRP 1013
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 85.5 bits (210), Expect = 2e-16
Identities = 172/709 (24%), Positives = 245/709 (34%), Gaps = 155/709 (21%)
Query: 292 PPGPPPPHPQRGLGLATGA-SGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPPLFP 350
PPG PPPHPQ G G SGP P GP GG S + P+ G ++ PPP P
Sbjct: 209 PPGAPPPHPQLYPGGTGGVLSGP--PMGPKGGGAASS---VGGPNGG----KQHPPPTTP 259
Query: 351 HPYGFPTAFGLCPKK--DDPVLGAGEPKGGPGTG----------------SGGGGAGTGG 392
A G P K PV G P P A G
Sbjct: 260 ISVSSSGASGAPPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASASPPG 319
Query: 393 GAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAG 452
P HLP G G G + P G K T+ P+ PA+
Sbjct: 320 LGAQPLPGHLPSPHAMGQGMGGL-----PPGPEK----------GPTLAPSPHSLPPASS 364
Query: 453 SLPVP--SYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEERCP 510
S P P +P + S + + AAA++++++++ S +P P A P+ P
Sbjct: 365 SAPAPPMRFPYSSSSSSS-----AAASSSSSSSSSSASPFPASQALPSYPHSFPP----P 415
Query: 511 SALSRGPLDEDGTDEALPPPL--APLPPPPPP---------------PARKGSYVSAFRP 553
++LS T +LP + PPPPPP P G+ +A P
Sbjct: 416 TSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRLLANSNAHPGPFPPSTGAQSTAHPP 475
Query: 554 V--------VKDTESIAKLYGSAREAYGAGPARGPGPGA-------GSGGYVSPDFLSEG 598
V + + + ++ G + P PGA GS + P +S
Sbjct: 476 VSTHHHHHQQQQQQQQQQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGSSHHAHPYAMSPS 535
Query: 599 SSSYNSASPDVDTADEPEVD------------VESNRFPDDEDAQEETEPSAPSAGGGPD 646
S P P V S+ +Q S PS GP
Sbjct: 536 LGSLRPYPPGPAHLPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQGPQ 595
Query: 647 GEQ---PTGPPSATSSG---------ADGPAN----SPDGGSPRPRRRLGP-------PP 683
G P P TSS A PA SP G P +R P PP
Sbjct: 596 GAPYPFPPVPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPP 655
Query: 684 AGRPAFGDLAAEDLVRRP---ERSPPSGGGGYELREPCGPLGGPAPAKVFAPERDEHV-- 738
+P G + P SPP+G G + +P P GP P P +
Sbjct: 656 GYKP--GSPPSFRTGTPPGYRGTSPPAGPGTF---KPGSPTVGPGPLPPAGPSGLPSLPP 710
Query: 739 KSAAVALGPAASYVCTPEAHEPDKEDNHSPADDLETRKS-YPDQRSISQPSPANTDRGED 797
AA A GP S + PA++ ET +S P RS S P P D
Sbjct: 711 PPAAPASGPPLSAT----------QIKQEPAEEYETPESPVPPARSPS-PPPKVVDVPSH 759
Query: 798 GLTLDVTGTHLVEKDIENLAREELQKLLLEQMELRKKLEREFQSLKDNFQDQMKRELAYR 857
HL ++ + AR +L + LE +L KK + + ++++RE R
Sbjct: 760 ASQSARFNKHL-DRGFNSCARSDLYFVPLEGSKLAKK--------RADLVEKVRREAEQR 810
Query: 858 EEMVQQLQIVRDTLCNELDQERKARYAIQQKLKEAHDALHHFSCKMLTP 906
++ + R+ E ++ER+ +++ +K A + C L P
Sbjct: 811 AREEKERERERE---REKEREREKERELERSVKLAQEGRAPVECPSLGP 856
Score = 50.4 bits (119), Expect = 7e-06
Identities = 78/323 (24%), Positives = 109/323 (33%), Gaps = 60/323 (18%)
Query: 493 DGAEPAKESGLGAEERCPSALSRGPLDEDGTDEA----------LPPPLAPLPPPPPPPA 542
DG+ ++ PS S G ++ D + PPPL P P P PP +
Sbjct: 116 DGSSDPRDIDQDNRSTSPSIYSPGSVENDSDSSSGLSQGPARPYHPPPLFP-PSPQPPDS 174
Query: 543 RKGSYVSAFRP--VVKDTESIAKLYGSAREAYGAGPARGPG-----PGAGSGGYVS-PDF 594
++F P V T A + + A P P PG G+GG +S P
Sbjct: 175 TPRQPEASFEPHPSVTPTGYHAPMEPPTSRMFQAPPGAPPPHPQLYPG-GTGGVLSGPPM 233
Query: 595 LSEGSSSYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPP 654
+G + +S P T P + S+ G G PT PP
Sbjct: 234 GPKGGGAASSVGGPNGGKQHPP----------------PTTPISVSSSGA-SGAPPTKPP 276
Query: 655 SATSSGADGPANSPDGGSPRPRRRLGPPPAGRPAFGDLAAEDLVRRPERSPPSGG----- 709
+ G + P+ P P L PPPA RP + SPP G
Sbjct: 277 TTPVGGGNLPSAPPPANFPHVTPNLPPPPALRP----------LNNASASPPGLGAQPLP 326
Query: 710 GGYELREPCGP-LGGPAPAKVFAPERDEHVKSAAVALGPAASYVCTPEAHEPDKEDNHSP 768
G G +GG P PE+ + + +L PA+S P P + S
Sbjct: 327 GHLPSPHAMGQGMGGLPP----GPEKGPTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSS 382
Query: 769 ADDLETRKSYPDQRSISQPSPAN 791
A S S + P PA+
Sbjct: 383 A---AASSSSSSSSSSASPFPAS 402
Score = 49.7 bits (117), Expect = 1e-05
Identities = 118/478 (24%), Positives = 153/478 (32%), Gaps = 80/478 (16%)
Query: 276 PPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPVP- 334
PPPH + + AGP GPP + S P P G YP PVP
Sbjct: 550 PPPHSQVSYSQ---AGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPT 606
Query: 335 -SKGFGLLQKLPPPLFPHPYGFPTAFGLCPK---KDDPVLGAGEPKGGPG---------- 380
+ L + + P G+ TA P K P GA + PG
Sbjct: 607 VTTSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGSPPSFR 666
Query: 381 TGSGGGGAGT----GGGAGGPGASHLPPG--AGAGPGGGAMFWGHQPSGAAKDAAAVAAA 434
TG+ G GT G G PG+ + PG AGP G PS AA +
Sbjct: 667 TGTPPGYRGTSPPAGPGTFKPGSPTVGPGPLPPAGPSG-------LPSLPPPPAAPASGP 719
Query: 435 AAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAA----------AAAA 484
+AT P PVP + K V A+ +A + A
Sbjct: 720 PLSATQIKQEPAEEYETPESPVPPARSPSPPPKVVDVPSHASQSARFNKHLDRGFNSCAR 779
Query: 485 GSGAPEPLDGAEPAKESG-------LGAEERCPSALSRG--------------------- 516
PL+G++ AK+ AE+R R
Sbjct: 780 SDLYFVPLEGSKLAKKRADLVEKVRREAEQRAREEKEREREREREKEREREKERELERSV 839
Query: 517 PLDEDGTDEALPPPLAPLPPPPPPPARKGSYVSAFRPVV-KDTESIAKLYGSAREAYGAG 575
L ++G P L P+ P PP GS V+ P + DT ++ L AR +
Sbjct: 840 KLAQEGRAPVECPSLGPV--PHRPPFEPGSAVATVPPYLGPDTPALRTLSEYAR-PHVMS 896
Query: 576 PARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTADEP--EVDVESNRFPDDEDAQEE 633
P P G V P L + S+ P + E D+ P E E
Sbjct: 897 PGNRNHPFYVPLGAVDPGLLGYNVPALYSSDPAAREREREARERDLRDRLKPGFEVKPSE 956
Query: 634 TEPSAPSAGGGPDGEQPTGPPSATSSGADG----PANSPDGGSPRPRRRLGPPPAGRP 687
EP G G D P A G G P + G R R L PA RP
Sbjct: 957 LEPLHGVPGPGLD-PFPRHGGLALQPGPPGLHPFPFHPSLGPLERERLALAAGPALRP 1013
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 84.0 bits (206), Expect = 6e-16
Identities = 158/612 (25%), Positives = 196/612 (32%), Gaps = 120/612 (19%)
Query: 269 GAEMAPGPPPHKSLRC--------------GEDEAAGPPGPPPPHPQRGLGLATGASGPA 314
G + PGPP + R GE AG G P RGL G +G A
Sbjct: 582 GEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAA 641
Query: 315 GPGGPGGGAGVRSYPVIPVPSKGFGLLQKLP-PPLFPHPYGFPTAFGLCPKKDDPVL--- 370
GP GP G AG R P PS GF Q LP PP P G P G+ + P L
Sbjct: 642 GPPGPAGPAGERGEQGAPGPS-GF---QGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGP 697
Query: 371 ----------------GAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPG--G 412
G P+G PGT G G G AG PGA PPG PG G
Sbjct: 698 RGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQG-PPGLQGMPGERG 756
Query: 413 GAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAA 472
A G P G D A P G + P A + V
Sbjct: 757 AAGIAG--PKGDRGDVGEKGPEGA-----PGKDGGRGLTGPIGPPGPAGANGEKGEVGPP 809
Query: 473 VAAAAAAAAAAAG----SGAPEPLDGAEPAKESGLGAEERCPSALSRGPLDEDGTDEALP 528
A +A A A G +G P P A P GA+ + + +G + G D P
Sbjct: 810 GPAGSAGARGAPGERGETGPPGPAGFAGPP-----GADGQPGAKGEQGEAGQKG-DAGAP 863
Query: 529 PPLAPLPPPPPP-----PARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPG 583
P P P P KG+ + P A G GP PGP
Sbjct: 864 GPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPS 923
Query: 584 AGSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGG 643
+G S A EP ++ P E + E PS
Sbjct: 924 G-----------KDGPKGARGDSGPPGRAGEP--GLQGPAGPPGE--KGEPGDDGPSGAE 968
Query: 644 GPDGEQP-------TGPPSATSS----GADGPANSP-DGGSPRPRRRLGPP-PAGRPAFG 690
GP G Q G P G GP+ P G+P GPP P G P
Sbjct: 969 GPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLT 1028
Query: 691 DLAAEDLVRRPERSPPSGGGGYELREPC-------------------GPLGGPAPAKVFA 731
A E P R G G R+ GP G P PA
Sbjct: 1029 GPAGE-----PGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTG 1083
Query: 732 PERDEHVKSAAVALGPA----ASYVCTPEAHEPDKEDNHSPAD-DLETRKSYPDQRSISQ 786
+ D A +GP+ A + P+ DK + P + L+ + + + +
Sbjct: 1084 KQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPG 1143
Query: 787 PSPANTDRGEDG 798
P + D+G G
Sbjct: 1144 PPGPSGDQGASG 1155
Score = 77.0 bits (188), Expect = 7e-14
Identities = 149/552 (26%), Positives = 177/552 (32%), Gaps = 113/552 (20%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSY 328
G PG P + G AGPPG P +G+ GA+G AGP G G G +
Sbjct: 717 GPRGLPGTPGTDGPK-GASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGP 775
Query: 329 PVIPVPSKGFGLLQKLPPPLF------------PHPYGFPTAFGLCPKKDD-----PVLG 371
P G GL + PP P P G A G ++ + P
Sbjct: 776 EGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGF 835
Query: 372 AGEP--KGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPS-GAAKDA 428
AG P G PG G AG G AG PG P GP G G + + GA
Sbjct: 836 AGPPGADGQPGAKGEQGEAGQKGDAGAPGPQG--PSGAPGPQGPTGVTGPKGARGAQGPP 893
Query: 429 AAVAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGA 488
A AA V P P P P P+ + K A A
Sbjct: 894 GATGFPGAAGRVGPPGSNGNPGP---PGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPA 950
Query: 489 PEPLDGAEPAKESGLGAE-ERCPSALSR--------------------GPLDEDGT---- 523
P + EP + GAE P L+ GP E G
Sbjct: 951 GPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAP 1010
Query: 524 ----DEALPPPLAP--LPPPPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGA--- 574
D P P+ P L P P R+GS A P +D + K A GA
Sbjct: 1011 GASGDRGPPGPVGPPGLTGPAGEPGREGS-PGADGPPGRDGAAGVKGDRGETGAVGAPGA 1069
Query: 575 -GPARGPGPG-----------AGSGGYVSPDFLSEGSSSYNSASP--DVDTADEP-EVDV 619
GP PGP AG+ G + P + P D A EP E +
Sbjct: 1070 PGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGL 1129
Query: 620 ESNR-FPDDEDAQEETEPSAPSAGGGPDGEQ-PTGPPSATS-SGADGPANSPDGGSPRPR 676
+ +R F + PS GP G P GPP SG DG G P P
Sbjct: 1130 KGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGA-----NGIPGP- 1183
Query: 677 RRLGPP-PAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGPLGGPAPAKVFAPERD 735
+GPP P GR SG G P GP G P P P
Sbjct: 1184 --IGPPGPRGR--------------------SGETG-----PAGPPGNPGPPGPPGPPGP 1216
Query: 736 EHVKSAAVALGP 747
SA LGP
Sbjct: 1217 GIDMSAFAGLGP 1228
Score = 71.6 bits (174), Expect = 3e-12
Identities = 154/573 (26%), Positives = 185/573 (32%), Gaps = 117/573 (20%)
Query: 285 GEDEAAGPPGPPPPHPQRGLGLATGASGPAGP---GGPGGGAGVRSYPVIP--------- 332
G+ AGPPGP P G A GA G AGP GP G G R P P
Sbjct: 348 GQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGAS 407
Query: 333 -------VP-SKG-FGLLQKLPPPLFPHPYGFPTAFG----LCPK--KDDPVL----GAG 373
+P +KG G P FP P G P G L PK +P + G
Sbjct: 408 GNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQ 467
Query: 374 EPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAG-AGPGGGAMFWGHQ----PSGAAKDA 428
PKG PG G G G G GA P G G GP G G++ G A
Sbjct: 468 GPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPK 527
Query: 429 AAVAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAG-SG 487
A + P P G P P A+ A + A G G
Sbjct: 528 GAPGERGPSGLAGPKGANGDP--GRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDG 585
Query: 488 APEPLDGAEPAK----------------ESGLGAEERCPSALS-RGPLDEDGTDEALPPP 530
P P G + A+ E G E+ P A RG +DG A PP
Sbjct: 586 RPGP-PGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPP 644
Query: 531 -------------------LAPLPPPPPPPARKGSYVSAFRPVVKDTESIA-----KLYG 566
LP PP PP G P + + +
Sbjct: 645 GPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFP 704
Query: 567 SAREAYGAGPARGP----------GPGAGSG-----GYVSPDFLSEGSSSYNS---ASPD 608
R + GA +GP GP SG G P L + A P
Sbjct: 705 GERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPK 764
Query: 609 VDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQ-PTGPPS-ATSSGADG-PA 665
D D E E P + + T P P G +GE+ GPP A S+GA G P
Sbjct: 765 GDRGDVGEKGPEG--APGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPG 822
Query: 666 NSPDGGSPRPRRRLGPP-----PAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGP 720
+ G P P GPP P + G+ + P PSG G P GP
Sbjct: 823 ERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPG-----PQGP 877
Query: 721 LG--GPAPAK-VFAPERDEHVKSAAVALGPAAS 750
G GP A+ P AA +GP S
Sbjct: 878 TGVTGPKGARGAQGPPGATGFPGAAGRVGPPGS 910
Score = 64.7 bits (156), Expect = 4e-10
Identities = 160/611 (26%), Positives = 200/611 (32%), Gaps = 97/611 (15%)
Query: 269 GAEMAPGPP-----PHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGA 323
G APGP P + G GP GPP P + G G G AG GP G
Sbjct: 213 GPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQ 272
Query: 324 GVRSYPVIP-VPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDP----VLGAGEPKGG 378
G R +P P +P G+ P G A G+ + P G P+G
Sbjct: 273 GARGFPGTPGLP----GVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGL 328
Query: 379 PG----TGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQ-------PSGAAKD 427
PG TG G AG G G PG + PPG GP GG F G P+GA
Sbjct: 329 PGERGRTGP-AGAAGARGNDGQPGPAG-PPGP-VGPAGGPGFPGAPGAKGEAGPTGARGP 385
Query: 428 AAAVAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAG-S 486
A T P P A+G+ P A+ A A A A G
Sbjct: 386 EGAQGPRGEPGT--PGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQ 443
Query: 487 GAPEPLDGAEPAKESGLGA--EERCPSAL--------SRGPLDEDGTDEALPPP--LAPL 534
GA PL E G+ E+ P + GP E+G A P + P+
Sbjct: 444 GATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPI 503
Query: 535 PPPPPP--------PARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPG----- 581
PP P + G P + +A G+ + G PG
Sbjct: 504 GPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLT 563
Query: 582 --PG-AGSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDDE--DAQEETEP 636
PG AG G V P P + + + E A E+ P
Sbjct: 564 GRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLP 623
Query: 637 SAPSAGG--GPDGEQ----PTGPPSATSSGADGPANSPDG--GSPRPRRRLGPP-----P 683
AP G G DGE P GP + A P G G P P GPP P
Sbjct: 624 GAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPP---GPPGEGGKP 680
Query: 684 AGRPAFGDLAAEDLV-RRPERSPPSGGGGYELREPCGPLGGPAPAKVFAPERDEHVKSAA 742
+ G+ A LV R ER P G + GP G P P+
Sbjct: 681 GDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPP 740
Query: 743 VALGP----------AASYVCTPEAHEPD---KEDNHSPADDLETRKSYPDQRSISQPSP 789
A GP A+ + P+ D K +P D + P I P P
Sbjct: 741 GAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGP----IGPPGP 796
Query: 790 --ANTDRGEDG 798
AN ++GE G
Sbjct: 797 AGANGEKGEVG 807
Score = 64.3 bits (155), Expect = 5e-10
Identities = 129/515 (25%), Positives = 152/515 (29%), Gaps = 97/515 (18%)
Query: 274 PGPPPHKSLRCGEDEAAGPPGPPPP------HPQRGLGLATGASGPAGPGGPGGGAGVRS 327
PGP K + GP GPP P RG G G GP G G G
Sbjct: 100 PGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPG 159
Query: 328 YPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGE-------PKGGPG 380
P P P G PP + A G K LG + P+G PG
Sbjct: 160 NPGPPGPPGPPG------PPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPG 213
Query: 381 TGSGGGGAGTGGGAGGPGASHL--PPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAA 438
G G G G PG + P G PG P G D A
Sbjct: 214 PAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPG---------PPGKPGDDGEAGKPGKAG 264
Query: 439 TVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAG-SGAPEPLDGAEP 497
P P A G P P + A A A G SG+P P
Sbjct: 265 ERGPPGPQ--GARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGP 322
Query: 498 AKESGL-GAEERCPSALSRGPLDEDGTDEALPPPLAPLPPPPPP--PARKGSYVSAFRPV 554
GL G R A + G DG PP P+ P P P G+ A
Sbjct: 323 MGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPP-GPVGPAGGPGFPGAPGAKGEAGPTG 381
Query: 555 VKDTESIAKLYGSAREAYGAGPARGPG-PG----------------AGSGGYVSPDFLSE 597
+ E G GPA G PG AG+ G+ P
Sbjct: 382 ARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPG 441
Query: 598 GSSSYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQ-------- 649
+ P T EP + F ++ + E P+ P GP GE+
Sbjct: 442 PQGATGPLGPKGQTG-EPGI----AGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGE 496
Query: 650 -----PTGPPSATSS----------GADGPANSPDGGSPRPRRRLGPPPA----GRPAFG 690
P GPP + G GP +P G P GP A GRP
Sbjct: 497 PGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAP--GERGPSGLAGPKGANGDPGRPGEP 554
Query: 691 DL-AAEDLVRRPERSPPSGGGGYELREPCGPLGGP 724
L A L RP + P G GP G P
Sbjct: 555 GLPGARGLTGRPGDAGPQG--------KVGPSGAP 581
Score = 61.2 bits (147), Expect = 4e-09
Identities = 64/201 (31%), Positives = 69/201 (34%), Gaps = 51/201 (25%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSY 328
GA APGPP G PGP P ++G GA GP GP GP G G++
Sbjct: 1065 GAPGAPGPP-------------GSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQG- 1110
Query: 329 PVIPVPSKG---------------FGLLQKLPPPLFPH-------------PYGFPTAFG 360
P P KG F LQ LP P P P G P G
Sbjct: 1111 PQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVG 1170
Query: 361 LCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGG---AMFW 417
P D G P G PG G G G G PG PPG PG G + F
Sbjct: 1171 --PSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPG----PPGPPGPPGPGIDMSAFA 1224
Query: 418 GHQPSGAAKDAAAVAAAAAAA 438
G P D A AA
Sbjct: 1225 GLGPREKGPDPLQYMRADQAA 1245
Score = 58.9 bits (141), Expect = 2e-08
Identities = 115/435 (26%), Positives = 133/435 (30%), Gaps = 65/435 (14%)
Query: 272 MAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVI 331
M P PP + G G PG P + G+ G GP GP G G G P
Sbjct: 206 MGPRGPPGPAGAPGPQGFQGNPGEPG---EPGVSGPMGPRGPPGPPGKPGDDGEAGKP-- 260
Query: 332 PVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDD---PVL-GAGEPKGGPGTGSGGGG 387
G + PP GFP GL K P L GA G PG G
Sbjct: 261 -------GKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGS 313
Query: 388 AGTGGGAGGPGASHLPPGAG-AGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPM 446
G G G G LP G GP G A GA + A V P
Sbjct: 314 PGENGSPGPMGPRGLPGERGRTGPAGAA--------GARGNDGQPGPAGPPGPVGP---- 361
Query: 447 FWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAE 506
AG P P A+ + A A A G P PA SG
Sbjct: 362 ----AGGPGFPGAPGAKGE-----AGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGT 412
Query: 507 ERCPSALSRGPLDEDGTDEALPPPLAPLP-PPPPPPARKGSYVSAFRPVVKDTESIAKLY 565
+ P A +G G A P P P PP P G +
Sbjct: 413 DGIPGA--KGSAGAPGIAGA---PGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQ 467
Query: 566 GSAREAYGAGPARGPGPGAGSG-----------GYVSPDFLSEGSSSYNSASPDVDTADE 614
G E AGP PGP G G + P E + N P D
Sbjct: 468 GPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPP--GERGAPGNRGFPGQDGLAG 525
Query: 615 PEVDVESNRFPDDEDAQE--ETEPSAPSAGGGPDGEQPTG-PPSATSSGADGPANSP--D 669
P+ R P + +P P G P TG P A G GP+ +P D
Sbjct: 526 PK-GAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGED 584
Query: 670 G--GSPRPRRRLGPP 682
G G P P+ G P
Sbjct: 585 GRPGPPGPQGARGQP 599
Score = 34.7 bits (78), Expect = 0.42
Identities = 33/115 (28%), Positives = 42/115 (36%), Gaps = 14/115 (12%)
Query: 629 DAQEETEPSAPSAGGGPDGEQPTGPPSATSSGADGPANSPDG--GSPRPRRRLGPP---- 682
D ++ P P GP GEQ GP + A P G G P GPP
Sbjct: 111 DIKDIVGPKGPPGPQGPAGEQ--GPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPG 168
Query: 683 PAGRPAFGDLAAEDLVRRPERSPPSGGGGYELRE----PCGPLGGPAPAKVFAPE 733
P G P G A + + +GG + + P GP G P PA P+
Sbjct: 169 PPGPPGLGGNFAAQMAGGFDEK--AGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQ 221
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 84.0 bits (206), Expect = 6e-16
Identities = 158/612 (25%), Positives = 196/612 (32%), Gaps = 120/612 (19%)
Query: 269 GAEMAPGPPPHKSLRC--------------GEDEAAGPPGPPPPHPQRGLGLATGASGPA 314
G + PGPP + R GE AG G P RGL G +G A
Sbjct: 513 GEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAA 572
Query: 315 GPGGPGGGAGVRSYPVIPVPSKGFGLLQKLP-PPLFPHPYGFPTAFGLCPKKDDPVL--- 370
GP GP G AG R P PS GF Q LP PP P G P G+ + P L
Sbjct: 573 GPPGPAGPAGERGEQGAPGPS-GF---QGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGP 628
Query: 371 ----------------GAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPG--G 412
G P+G PGT G G G AG PGA PPG PG G
Sbjct: 629 RGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQG-PPGLQGMPGERG 687
Query: 413 GAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAA 472
A G P G D A P G + P A + V
Sbjct: 688 AAGIAG--PKGDRGDVGEKGPEGA-----PGKDGGRGLTGPIGPPGPAGANGEKGEVGPP 740
Query: 473 VAAAAAAAAAAAG----SGAPEPLDGAEPAKESGLGAEERCPSALSRGPLDEDGTDEALP 528
A +A A A G +G P P A P GA+ + + +G + G D P
Sbjct: 741 GPAGSAGARGAPGERGETGPPGPAGFAGPP-----GADGQPGAKGEQGEAGQKG-DAGAP 794
Query: 529 PPLAPLPPPPPP-----PARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPG 583
P P P P KG+ + P A G GP PGP
Sbjct: 795 GPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPS 854
Query: 584 AGSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGG 643
+G S A EP ++ P E + E PS
Sbjct: 855 G-----------KDGPKGARGDSGPPGRAGEP--GLQGPAGPPGE--KGEPGDDGPSGAE 899
Query: 644 GPDGEQP-------TGPPSATSS----GADGPANSP-DGGSPRPRRRLGPP-PAGRPAFG 690
GP G Q G P G GP+ P G+P GPP P G P
Sbjct: 900 GPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLT 959
Query: 691 DLAAEDLVRRPERSPPSGGGGYELREPC-------------------GPLGGPAPAKVFA 731
A E P R G G R+ GP G P PA
Sbjct: 960 GPAGE-----PGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTG 1014
Query: 732 PERDEHVKSAAVALGPA----ASYVCTPEAHEPDKEDNHSPAD-DLETRKSYPDQRSISQ 786
+ D A +GP+ A + P+ DK + P + L+ + + + +
Sbjct: 1015 KQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPG 1074
Query: 787 PSPANTDRGEDG 798
P + D+G G
Sbjct: 1075 PPGPSGDQGASG 1086
Score = 77.0 bits (188), Expect = 7e-14
Identities = 149/552 (26%), Positives = 177/552 (32%), Gaps = 113/552 (20%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSY 328
G PG P + G AGPPG P +G+ GA+G AGP G G G +
Sbjct: 648 GPRGLPGTPGTDGPK-GASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGP 706
Query: 329 PVIPVPSKGFGLLQKLPPPLF------------PHPYGFPTAFGLCPKKDD-----PVLG 371
P G GL + PP P P G A G ++ + P
Sbjct: 707 EGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGF 766
Query: 372 AGEP--KGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPS-GAAKDA 428
AG P G PG G AG G AG PG P GP G G + + GA
Sbjct: 767 AGPPGADGQPGAKGEQGEAGQKGDAGAPGPQG--PSGAPGPQGPTGVTGPKGARGAQGPP 824
Query: 429 AAVAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGA 488
A AA V P P P P P+ + K A A
Sbjct: 825 GATGFPGAAGRVGPPGSNGNPGP---PGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPA 881
Query: 489 PEPLDGAEPAKESGLGAE-ERCPSALSR--------------------GPLDEDGT---- 523
P + EP + GAE P L+ GP E G
Sbjct: 882 GPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAP 941
Query: 524 ----DEALPPPLAP--LPPPPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGA--- 574
D P P+ P L P P R+GS A P +D + K A GA
Sbjct: 942 GASGDRGPPGPVGPPGLTGPAGEPGREGS-PGADGPPGRDGAAGVKGDRGETGAVGAPGA 1000
Query: 575 -GPARGPGPG-----------AGSGGYVSPDFLSEGSSSYNSASP--DVDTADEP-EVDV 619
GP PGP AG+ G + P + P D A EP E +
Sbjct: 1001 PGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGL 1060
Query: 620 ESNR-FPDDEDAQEETEPSAPSAGGGPDGEQ-PTGPPSATS-SGADGPANSPDGGSPRPR 676
+ +R F + PS GP G P GPP SG DG G P P
Sbjct: 1061 KGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGA-----NGIPGP- 1114
Query: 677 RRLGPP-PAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGPLGGPAPAKVFAPERD 735
+GPP P GR SG G P GP G P P P
Sbjct: 1115 --IGPPGPRGR--------------------SGETG-----PAGPPGNPGPPGPPGPPGP 1147
Query: 736 EHVKSAAVALGP 747
SA LGP
Sbjct: 1148 GIDMSAFAGLGP 1159
Score = 71.6 bits (174), Expect = 3e-12
Identities = 154/573 (26%), Positives = 185/573 (32%), Gaps = 117/573 (20%)
Query: 285 GEDEAAGPPGPPPPHPQRGLGLATGASGPAGP---GGPGGGAGVRSYPVIP--------- 332
G+ AGPPGP P G A GA G AGP GP G G R P P
Sbjct: 279 GQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGAS 338
Query: 333 -------VP-SKG-FGLLQKLPPPLFPHPYGFPTAFG----LCPK--KDDPVL----GAG 373
+P +KG G P FP P G P G L PK +P + G
Sbjct: 339 GNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQ 398
Query: 374 EPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAG-AGPGGGAMFWGHQ----PSGAAKDA 428
PKG PG G G G G GA P G G GP G G++ G A
Sbjct: 399 GPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPK 458
Query: 429 AAVAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAG-SG 487
A + P P G P P A+ A + A G G
Sbjct: 459 GAPGERGPSGLAGPKGANGDP--GRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDG 516
Query: 488 APEPLDGAEPAK----------------ESGLGAEERCPSALS-RGPLDEDGTDEALPPP 530
P P G + A+ E G E+ P A RG +DG A PP
Sbjct: 517 RPGP-PGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPP 575
Query: 531 -------------------LAPLPPPPPPPARKGSYVSAFRPVVKDTESIA-----KLYG 566
LP PP PP G P + + +
Sbjct: 576 GPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFP 635
Query: 567 SAREAYGAGPARGP----------GPGAGSG-----GYVSPDFLSEGSSSYNS---ASPD 608
R + GA +GP GP SG G P L + A P
Sbjct: 636 GERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPK 695
Query: 609 VDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQ-PTGPPS-ATSSGADG-PA 665
D D E E P + + T P P G +GE+ GPP A S+GA G P
Sbjct: 696 GDRGDVGEKGPEG--APGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPG 753
Query: 666 NSPDGGSPRPRRRLGPP-----PAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGP 720
+ G P P GPP P + G+ + P PSG G P GP
Sbjct: 754 ERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPG-----PQGP 808
Query: 721 LG--GPAPAK-VFAPERDEHVKSAAVALGPAAS 750
G GP A+ P AA +GP S
Sbjct: 809 TGVTGPKGARGAQGPPGATGFPGAAGRVGPPGS 841
Score = 64.7 bits (156), Expect = 4e-10
Identities = 160/611 (26%), Positives = 200/611 (32%), Gaps = 97/611 (15%)
Query: 269 GAEMAPGPP-----PHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGA 323
G APGP P + G GP GPP P + G G G AG GP G
Sbjct: 144 GPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQ 203
Query: 324 GVRSYPVIP-VPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDP----VLGAGEPKGG 378
G R +P P +P G+ P G A G+ + P G P+G
Sbjct: 204 GARGFPGTPGLP----GVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGL 259
Query: 379 PG----TGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQ-------PSGAAKD 427
PG TG G AG G G PG + PPG GP GG F G P+GA
Sbjct: 260 PGERGRTGP-AGAAGARGNDGQPGPAG-PPGP-VGPAGGPGFPGAPGAKGEAGPTGARGP 316
Query: 428 AAAVAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAG-S 486
A T P P A+G+ P A+ A A A A G
Sbjct: 317 EGAQGPRGEPGT--PGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQ 374
Query: 487 GAPEPLDGAEPAKESGLGA--EERCPSAL--------SRGPLDEDGTDEALPPP--LAPL 534
GA PL E G+ E+ P + GP E+G A P + P+
Sbjct: 375 GATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPI 434
Query: 535 PPPPPP--------PARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPG----- 581
PP P + G P + +A G+ + G PG
Sbjct: 435 GPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLT 494
Query: 582 --PG-AGSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDDE--DAQEETEP 636
PG AG G V P P + + + E A E+ P
Sbjct: 495 GRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLP 554
Query: 637 SAPSAGG--GPDGEQ----PTGPPSATSSGADGPANSPDG--GSPRPRRRLGPP-----P 683
AP G G DGE P GP + A P G G P P GPP P
Sbjct: 555 GAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPP---GPPGEGGKP 611
Query: 684 AGRPAFGDLAAEDLV-RRPERSPPSGGGGYELREPCGPLGGPAPAKVFAPERDEHVKSAA 742
+ G+ A LV R ER P G + GP G P P+
Sbjct: 612 GDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPP 671
Query: 743 VALGP----------AASYVCTPEAHEPD---KEDNHSPADDLETRKSYPDQRSISQPSP 789
A GP A+ + P+ D K +P D + P I P P
Sbjct: 672 GAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGP----IGPPGP 727
Query: 790 --ANTDRGEDG 798
AN ++GE G
Sbjct: 728 AGANGEKGEVG 738
Score = 64.3 bits (155), Expect = 5e-10
Identities = 129/515 (25%), Positives = 152/515 (29%), Gaps = 97/515 (18%)
Query: 274 PGPPPHKSLRCGEDEAAGPPGPPPP------HPQRGLGLATGASGPAGPGGPGGGAGVRS 327
PGP K + GP GPP P RG G G GP G G G
Sbjct: 31 PGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPG 90
Query: 328 YPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGE-------PKGGPG 380
P P P G PP + A G K LG + P+G PG
Sbjct: 91 NPGPPGPPGPPG------PPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPG 144
Query: 381 TGSGGGGAGTGGGAGGPGASHL--PPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAA 438
G G G G PG + P G PG P G D A
Sbjct: 145 PAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPG---------PPGKPGDDGEAGKPGKAG 195
Query: 439 TVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAG-SGAPEPLDGAEP 497
P P A G P P + A A A G SG+P P
Sbjct: 196 ERGPPGPQ--GARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGP 253
Query: 498 AKESGL-GAEERCPSALSRGPLDEDGTDEALPPPLAPLPPPPPP--PARKGSYVSAFRPV 554
GL G R A + G DG PP P+ P P P G+ A
Sbjct: 254 MGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPP-GPVGPAGGPGFPGAPGAKGEAGPTG 312
Query: 555 VKDTESIAKLYGSAREAYGAGPARGPG-PG----------------AGSGGYVSPDFLSE 597
+ E G GPA G PG AG+ G+ P
Sbjct: 313 ARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPG 372
Query: 598 GSSSYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQ-------- 649
+ P T EP + F ++ + E P+ P GP GE+
Sbjct: 373 PQGATGPLGPKGQTG-EPGI----AGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGE 427
Query: 650 -----PTGPPSATSS----------GADGPANSPDGGSPRPRRRLGPPPA----GRPAFG 690
P GPP + G GP +P G P GP A GRP
Sbjct: 428 PGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAP--GERGPSGLAGPKGANGDPGRPGEP 485
Query: 691 DL-AAEDLVRRPERSPPSGGGGYELREPCGPLGGP 724
L A L RP + P G GP G P
Sbjct: 486 GLPGARGLTGRPGDAGPQG--------KVGPSGAP 512
Score = 61.2 bits (147), Expect = 4e-09
Identities = 64/201 (31%), Positives = 69/201 (34%), Gaps = 51/201 (25%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSY 328
GA APGPP G PGP P ++G GA GP GP GP G G++
Sbjct: 996 GAPGAPGPP-------------GSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQG- 1041
Query: 329 PVIPVPSKG---------------FGLLQKLPPPLFPH-------------PYGFPTAFG 360
P P KG F LQ LP P P P G P G
Sbjct: 1042 PQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVG 1101
Query: 361 LCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGG---AMFW 417
P D G P G PG G G G G PG PPG PG G + F
Sbjct: 1102 --PSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPG----PPGPPGPPGPGIDMSAFA 1155
Query: 418 GHQPSGAAKDAAAVAAAAAAA 438
G P D A AA
Sbjct: 1156 GLGPREKGPDPLQYMRADQAA 1176
Score = 58.9 bits (141), Expect = 2e-08
Identities = 115/435 (26%), Positives = 133/435 (30%), Gaps = 65/435 (14%)
Query: 272 MAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVI 331
M P PP + G G PG P + G+ G GP GP G G G P
Sbjct: 137 MGPRGPPGPAGAPGPQGFQGNPGEPG---EPGVSGPMGPRGPPGPPGKPGDDGEAGKP-- 191
Query: 332 PVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDD---PVL-GAGEPKGGPGTGSGGGG 387
G + PP GFP GL K P L GA G PG G
Sbjct: 192 -------GKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGS 244
Query: 388 AGTGGGAGGPGASHLPPGAG-AGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPM 446
G G G G LP G GP G A GA + A V P
Sbjct: 245 PGENGSPGPMGPRGLPGERGRTGPAGAA--------GARGNDGQPGPAGPPGPVGP---- 292
Query: 447 FWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAE 506
AG P P A+ + A A A G P PA SG
Sbjct: 293 ----AGGPGFPGAPGAKGE-----AGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGT 343
Query: 507 ERCPSALSRGPLDEDGTDEALPPPLAPLP-PPPPPPARKGSYVSAFRPVVKDTESIAKLY 565
+ P A +G G A P P P PP P G +
Sbjct: 344 DGIPGA--KGSAGAPGIAGA---PGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQ 398
Query: 566 GSAREAYGAGPARGPGPGAGSG-----------GYVSPDFLSEGSSSYNSASPDVDTADE 614
G E AGP PGP G G + P E + N P D
Sbjct: 399 GPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPP--GERGAPGNRGFPGQDGLAG 456
Query: 615 PEVDVESNRFPDDEDAQE--ETEPSAPSAGGGPDGEQPTG-PPSATSSGADGPANSP--D 669
P+ R P + +P P G P TG P A G GP+ +P D
Sbjct: 457 PK-GAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGED 515
Query: 670 G--GSPRPRRRLGPP 682
G G P P+ G P
Sbjct: 516 GRPGPPGPQGARGQP 530
Score = 34.7 bits (78), Expect = 0.42
Identities = 33/115 (28%), Positives = 42/115 (36%), Gaps = 14/115 (12%)
Query: 629 DAQEETEPSAPSAGGGPDGEQPTGPPSATSSGADGPANSPDG--GSPRPRRRLGPP---- 682
D ++ P P GP GEQ GP + A P G G P GPP
Sbjct: 42 DIKDIVGPKGPPGPQGPAGEQ--GPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPG 99
Query: 683 PAGRPAFGDLAAEDLVRRPERSPPSGGGGYELRE----PCGPLGGPAPAKVFAPE 733
P G P G A + + +GG + + P GP G P PA P+
Sbjct: 100 PPGPPGLGGNFAAQMAGGFDEK--AGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQ 152
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 83.6 bits (205), Expect = 8e-16
Identities = 126/469 (26%), Positives = 153/469 (32%), Gaps = 97/469 (20%)
Query: 273 APGPPPHKSLRC--GEDEAAGPPGP------------PPPHPQRGLGLATGASGPAGPGG 318
APG P R GE GPPGP P +RG G GP G G
Sbjct: 784 APGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAG 843
Query: 319 PGGGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLC-PKKDDPVLGAGEPKG 377
P GG+G P P KG + P P GFP A GL P + G P G
Sbjct: 844 PPGGSGPAGPPG-PQGVKG-----ERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSG 897
Query: 378 GPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAA 437
PG G AG G G PG S P G PG P GA A
Sbjct: 898 SPGKDGPPGPAGNTGAPGSPGVSG-PKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGAR 956
Query: 438 ATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDG--- 494
P +P P K + A + G P+ L G
Sbjct: 957 GLAGPP---------GMPGPRGSPGPQGVKGESGK--PGANGLSGERGPPGPQGLPGLAG 1005
Query: 495 --AEPAKESGLGAEE---RCPSALSRGPLDEDGTDEALPPPLAPLPPPPPPPARKGSYVS 549
EP ++ G++ R S +G E+G+ A P P PP P PA K
Sbjct: 1006 TAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKS---- 1061
Query: 550 AFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDV 609
G E+ AGPA PGP AGS G P
Sbjct: 1062 ----------------GDRGESGPAGPAGAPGP-AGSRGAPGPQ---------GPRGDKG 1095
Query: 610 DTADEPEVDVESNR-FPDDEDAQEETEPSA---------PSAGGGPDGEQPTGPPSAT-S 658
+T + ++ +R FP + A P+ P+ GP G P+GPP +
Sbjct: 1096 ETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVG--PSGPPGKDGT 1153
Query: 659 SGADGPANSP-------------DGGSPRPRRRLGPPPAGRPAFGDLAA 694
SG GP P G P GPP A P G + A
Sbjct: 1154 SGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGA 1202
Score = 82.8 bits (203), Expect = 1e-15
Identities = 144/534 (26%), Positives = 169/534 (31%), Gaps = 85/534 (15%)
Query: 274 PGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPV 333
PGP + E GP GP P P G TG GP GP GPGG G P
Sbjct: 581 PGPKGNDGAPGKNGERGGPGGPGPQGPP-GKNGETGPQGPPGPTGPGGDKGDTGPP---- 635
Query: 334 PSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGG 393
G LQ LP G P P + P AG P G PG G G AG G
Sbjct: 636 ---GPQGLQGLPGT------GGPPGENGKPGEPGPKGDAGAP-GAPG---GKGDAGAPGE 682
Query: 394 AGGPGASHLPP-GAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAG 452
G PG + P GAGP G P G A AA T P G
Sbjct: 683 RGPPGLAGAPGLRGGAGPPG--------PEGGKGAAGPPGPPGAAGT--PGLQGMPGERG 732
Query: 453 SLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEERCPSA 512
L P + + A G P P +P + GA A
Sbjct: 733 GLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGP-PGPAGQPGDKGEGGAPGLPGIA 791
Query: 513 LSRGPLDEDGTDEALPPPLAPLPPPPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAY 572
RG E G E PP A P P G P K G A
Sbjct: 792 GPRGSPGERG--ETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPP---GVAGPPG 846
Query: 573 GAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDDEDAQE 632
G+GPA PGP G SP G++ + A P +
Sbjct: 847 GSGPAGPPGPQGVKGERGSPG--GPGAAGFPGA----------------RGLPGPPGSNG 888
Query: 633 ETEPSAPSAGGGPDGEQPTGPPSATSSGADGPANSPDGGSPRPRRRLGPPPAGRP-AFGD 691
P PS G DG P GP T + + P G + +P + P G P A G
Sbjct: 889 NPGPPGPSGSPGKDG--PPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGP 946
Query: 692 LAAEDLVRRPERSPPSGGGGYELREPCGPLGGPAPAKVFAPERDEHVKSAAVAL------ 745
L + + P G GP G P P V + E K A L
Sbjct: 947 LGIAGITGARGLAGPPG--------MPGPRGSPGPQGV----KGESGKPGANGLSGERGP 994
Query: 746 -GPAASYVCTPEAHEPDKEDNHSPADDLETRKSYPDQRSISQPSPANTDRGEDG 798
GP A EP ++ N +D L R P + DRGE+G
Sbjct: 995 PGPQGLPGLAGTAGEPGRDGNPG-SDGLPGRDGSPGGKG---------DRGENG 1038
Score = 74.3 bits (181), Expect = 5e-13
Identities = 131/504 (25%), Positives = 154/504 (30%), Gaps = 63/504 (12%)
Query: 269 GAEMAPGPPPHKSLRCGEDEA--AGPPGPP-------PPHPQ--------RGLGLATGAS 311
GA+ PGPP G+ E AG PG P PP P RG G +
Sbjct: 378 GAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKN 437
Query: 312 GPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLG 371
G G GP G G P +P G K P P G P A G + G
Sbjct: 438 GAKGEPGPRGERGEAGIPGVPGAKGEDG---KDGSPGEPGANGLPGAAG--ERGAPGFRG 492
Query: 372 AGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAV 431
P G PG G G G AG GA+ P G G G P G D
Sbjct: 493 PAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPG 552
Query: 432 AAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEP 491
+ + P P G V +P + A G G P P
Sbjct: 553 PPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGN--------DGAPGKNGERGGPGGPGP 604
Query: 492 LDGAEPAKESGLGAEERCPSALSRGPLDEDGTDEALPPPLAPLPPPPPPPARKGSYVSAF 551
P ++G + P G D+ T P L LP PP G
Sbjct: 605 ---QGPPGKNGETGPQGPPGPTGPGG-DKGDTGPPGPQGLQGLPGTGGPPGENG---KPG 657
Query: 552 RPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGY---VSPDFLSEGSSSYNSASPD 608
P K G +A GA RGP AG+ G P G + P
Sbjct: 658 EPGPKGDAGAPGAPGGKGDA-GAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPP 716
Query: 609 --VDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPPSATSSGADGPAN 666
T + E ++ EP P A G P + P GP G GPA
Sbjct: 717 GAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPI--GPPGPAG 774
Query: 667 SPDG----------------GSPRPRRRLGPP-PAGRPAFGDLAAEDLVRRPERSPPSGG 709
P GSP R GPP PAG P E + ER P
Sbjct: 775 QPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEP-GGKGERGAPGEK 833
Query: 710 GGYELREPCGPLGGPAPAKVFAPE 733
G GP GG PA P+
Sbjct: 834 GEGGPPGVAGPPGGSGPAGPPGPQ 857
Score = 74.3 bits (181), Expect = 5e-13
Identities = 137/494 (27%), Positives = 162/494 (32%), Gaps = 63/494 (12%)
Query: 273 APGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIP 332
APG P K G+ A G GPP GL A G G AGP GP GG G P P
Sbjct: 667 APGAPGGK----GDAGAPGERGPP------GLAGAPGLRGGAGPPGPEGGKGAAGPPGPP 716
Query: 333 ----------VPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTG 382
+P + GL P P G P A G+ P KD P G P G PG
Sbjct: 717 GAAGTPGLQGMPGERGGLGSPGPKGDKGEPGG-PGADGV-PGKDGP-RGPTGPIGPPGPA 773
Query: 383 SGGGGAGTGGGAGGPGASHLPPGAG----AGPGGGAMFWGHQPSGAAKDAAAVAAAAAAA 438
G G GG G PG + G GP G A F G A
Sbjct: 774 GQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEK 833
Query: 439 TVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAE-P 497
+ P GS P P Q + AA A G P +G P
Sbjct: 834 GEGGPPGVAGPPGGSGPAGP-PGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGP 892
Query: 498 AKESGLGAEERCPSALSRGPLDEDGTDEALPPPLAPLPPPPPPPARKGSYVSAFRPVVKD 557
SG ++ P GP G + P ++ P KGS + P
Sbjct: 893 PGPSGSPGKDGPP-----GPAGNTGAPGS--PGVSGPKGDAGQPGEKGSPGAQGPPGAPG 945
Query: 558 TESIAKLYGSAREAYGA----GPARGPGPGA--GSGGYVSPDFLS--EGSSSYNSASPDV 609
IA + G AR G GP PGP G G + LS G
Sbjct: 946 PLGIAGITG-ARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLA 1004
Query: 610 DTADEPEVDVE--SNRFPDDE-------DAQEETEPSAPSAGGGPDGEQPTGPPSAT--- 657
TA EP D S+ P + D E P AP A G P P GP +
Sbjct: 1005 GTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDR 1064
Query: 658 -SSGADGPANSPDGGSPRPRRRLGPPPAGRPAFGDLAAEDLVRRPERSPPSGGGGYELRE 716
SG GPA +P R P + G+ A + + R P G
Sbjct: 1065 GESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGI--KGHRGFPGNPGAPGSPG 1122
Query: 717 PC---GPLGGPAPA 727
P G +G P PA
Sbjct: 1123 PAGQQGAIGSPGPA 1136
Score = 73.6 bits (179), Expect = 8e-13
Identities = 123/459 (26%), Positives = 143/459 (31%), Gaps = 104/459 (22%)
Query: 285 GEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKL 344
G D GPPGPP G A G GPAG G G G R
Sbjct: 327 GSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGE---------------- 370
Query: 345 PPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHL-- 402
P P G GA P G PG GG G G AG PGA L
Sbjct: 371 -----PGPQGH--------------AGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMG 411
Query: 403 ------PPGAGAGPG--GGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSL 454
P GA PG GGA G AK A + P P G
Sbjct: 412 ARGPPGPAGANGAPGLRGGA---GEPGKNGAKGEPGPRGERGEAGI-PGVPGAKGEDGKD 467
Query: 455 PVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEERCPS-AL 513
P P A AA A G P + G E G E P A
Sbjct: 468 GSPGEPGAN------GLPGAAGERGAPGFRGPAGPNGIPG-----EKGPAGERGAPGPAG 516
Query: 514 SRGPLDEDGTDEALP--PPLAPLPPPPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREA 571
RG E G D +P P + +P P P G +P ++
Sbjct: 517 PRGAAGEPGRD-GVPGGPGMRGMPGSPGGPGSDG------KPGPPGSQ------------ 557
Query: 572 YGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDDEDAQ 631
G + PGP SG P + N +P + + P ++
Sbjct: 558 ---GESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPG-KNGERGGPGGPGPQGPPGKNG- 612
Query: 632 EETEPSAPSAGGGPDGEQ-PTGPPSATS-SGADG----PANSPDGGSPRPRRRLGPP--P 683
ET P P GP G++ TGPP G G P + G P P+ G P P
Sbjct: 613 -ETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAP 671
Query: 684 AGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGPLG 722
G+ GD A ER PP G LR GP G
Sbjct: 672 GGK---GDAGAPG-----ERGPPGLAGAPGLRGGAGPPG 702
Score = 69.3 bits (168), Expect = 2e-11
Identities = 145/542 (26%), Positives = 174/542 (32%), Gaps = 100/542 (18%)
Query: 271 EMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPV 330
E P PP + G+ GPPGP G G G +G G GP G AG P
Sbjct: 613 ETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGA---PG 669
Query: 331 IPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGG-AG 389
P G + PP G A GL GAG P GP G G G G
Sbjct: 670 APGGKGDAGAPGERGPP------GLAGAPGLRG-------GAGPP--GPEGGKGAAGPPG 714
Query: 390 TGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWP 449
G AG PG +P G G +P G D PT P+
Sbjct: 715 PPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRG----PTGPI--- 767
Query: 450 AAGSLPVPSYPAAQSQAKAVAAA-----VAAAAAAAAAAAGSGAPEP--LDGAEPAKESG 502
P PA Q K A +A + +G P P GA
Sbjct: 768 ------GPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEP 821
Query: 503 LGAEERCPSALSRGPLDEDGTDEALPPPLAPLPP-PPPPPARKGSYVSAFRPVVKDTESI 561
G ER + G E G PP P PP P KG S P
Sbjct: 822 GGKGERG----APGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGA 877
Query: 562 AKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVES 621
L G GP PGP +GS G P + N+ +P P+
Sbjct: 878 RGLPGPPGSNGNPGP---PGP-SGSPGKDGPP-----GPAGNTGAPGSPGVSGPK----- 923
Query: 622 NRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPPSATSSGADGPANSPDGGSPRPRRRLGP 681
DA + E +P A G P P G T GA G A P G P PR GP
Sbjct: 924 ------GDAGQPGEKGSPGAQGPPGAPGPLGIAGIT--GARGLAGPP--GMPGPRGSPGP 973
Query: 682 P----PAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGPLGGPAPAKVFA-PERDE 736
+G+P L+ ER PP GP G P A P RD
Sbjct: 974 QGVKGESGKPGANGLSG-------ERGPP------------GPQGLPGLAGTAGEPGRDG 1014
Query: 737 HVKSAAVALGPAASYVCTPEAHEPDKEDNHSPADDLETRKSYPDQRSISQPSPANTDRGE 796
+ S + G S + D+ +N SP +P P+ + DRGE
Sbjct: 1015 NPGSDGLP-GRDGS-----PGGKGDRGENGSPG--APGAPGHPGPPGPVGPAGKSGDRGE 1066
Query: 797 DG 798
G
Sbjct: 1067 SG 1068
Score = 56.6 bits (135), Expect = 1e-07
Identities = 118/501 (23%), Positives = 140/501 (27%), Gaps = 84/501 (16%)
Query: 278 PHKSLRCGEDEAAGPPGPPPP-HPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPVPSK 336
P+ + GE A P P P P G G GP G GP G G P IP
Sbjct: 75 PNPEIPFGECCAVCPQPPTAPTRPPNG----QGPQGPKGDPGPPGIPGRNGDPGIPGQPG 130
Query: 337 GFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAGG 396
P P P G + P+ P + + K G G G G G G
Sbjct: 131 S---------PGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGP 181
Query: 397 PGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPV 456
PG PPG PG P G A + P+ P AG
Sbjct: 182 PG----PPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGP-----AGKDGE 232
Query: 457 PSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAK----------ESGLGAE 506
P + A G DG K E+GL E
Sbjct: 233 SGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGE 292
Query: 507 ERCPSALS-------------RGPLDEDGTDEALPPPLAPLPPPPP-------PPARKGS 546
P + G G D A P PP PP P KG
Sbjct: 293 NGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGE 352
Query: 547 YVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSAS 606
A P G A GP PGP +G SP E + +
Sbjct: 353 VGPAGSPGSNGAPGQRGEPGPQGHAGAQGP---PGPPGING---SPGGKGEMGPAGIPGA 406
Query: 607 PDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQ-----PTGPPSATSSGA 661
P + A P +N P E + GP GE+ P P + G
Sbjct: 407 PGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGK 466
Query: 662 DGPANSP----------DGGSPRPRRRLGP--------PPAGRPAFGDLAAEDLVRRPER 703
DG P + G+P R GP P R A G P R
Sbjct: 467 DGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGR 526
Query: 704 SPPSGGGGYELREPCGPLGGP 724
GG G +R G GGP
Sbjct: 527 DGVPGGPG--MRGMPGSPGGP 545
Score = 54.7 bits (130), Expect = 4e-07
Identities = 51/157 (32%), Positives = 58/157 (36%), Gaps = 20/157 (12%)
Query: 269 GAEMAPGPP-----PHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGA 323
GA PGPP KS GE AGP G P P RG G G G G G A
Sbjct: 1044 GAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAA 1103
Query: 324 GVRSY---------PVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGE 374
G++ + P P P+ G + P P P P+ P D G
Sbjct: 1104 GIKGHRGFPGNPGAPGSPGPAGQQGAIGS-PGPAGPRGPVGPSG----PPGKDGTSGHPG 1158
Query: 375 PKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPG 411
P G PG G G+ G G PG PPG PG
Sbjct: 1159 PIGPPGPRGNRGERGSEGSPGHPGQPG-PPGPPGAPG 1194
Score = 51.2 bits (121), Expect = 4e-06
Identities = 52/168 (30%), Positives = 57/168 (33%), Gaps = 12/168 (7%)
Query: 285 GEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKL 344
G A G PGPP P G G SGPAGP G G AG R P P G +
Sbjct: 1041 GAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGER 1100
Query: 345 PPPLFPHPYGFPTAFGL----CPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPGAS 400
GFP G P +G+ P G G G G G +G PG
Sbjct: 1101 GAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPI 1160
Query: 401 HLP-PGAGAGPGGGAMFWGHQ-------PSGAAKDAAAVAAAAAAATV 440
P P G G GH P GA AAA A +
Sbjct: 1161 GPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIAGI 1208
Score = 43.1 bits (100), Expect = 0.001
Identities = 66/232 (28%), Positives = 76/232 (32%), Gaps = 42/232 (18%)
Query: 275 GPPPHKSLRCGEDEAAGPPGPP----PPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPV 330
G P K R GE+ + G PG P PP P G +G G +GP GP G G
Sbjct: 1026 GSPGGKGDR-GENGSPGAPGAPGHPGPPGPVGPAG-KSGDRGESGPAGPAGAPG------ 1077
Query: 331 IPVPSKGFGLLQKLPPPLFPH----PYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGG 386
P S+G P P P G A G+ + P G PG G
Sbjct: 1078 -PAGSRG------APGPQGPRGDKGETGERGAAGIKGHRGFP--------GNPGAPGSPG 1122
Query: 387 GAGTGGGAGGPG-ASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFP 445
AG G G PG A P +GP G GH P + P P
Sbjct: 1123 PAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGH-PGPIGPPGPRGNRGERGSEGSPGHP 1181
Query: 446 MFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEP 497
G P P A V AAA A +G P G EP
Sbjct: 1182 ------GQPGPPGPPGAPGPC---CGGVGAAAIAGIGGEKAGGFAPYYGDEP 1224
Score = 36.2 bits (82), Expect = 0.14
Identities = 66/265 (24%), Positives = 84/265 (31%), Gaps = 44/265 (16%)
Query: 269 GAEMAPGPPPHK--SLRCGEDEAAGPPGPPPPHPQRGL----------------GL---- 306
G +PGP K S + G + +G GPP P GL GL
Sbjct: 966 GPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRD 1025
Query: 307 -ATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKK 365
+ G G G G G G +P P P G K P G A G +
Sbjct: 1026 GSPGGKGDRGENGSPGAPGAPGHPGPPGP---VGPAGKSGDRGESGPAGPAGAPGPAGSR 1082
Query: 366 DDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAA 425
P G P+G G G AG G G PG PGA PG P+G
Sbjct: 1083 GAP--GPQGPRGDKGETGERGAAGIKGHRGFPG----NPGAPGSPG---------PAGQQ 1127
Query: 426 KDAAAVAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQ--SQAKAVAAAVAAAAAAAAAA 483
+ A V P+ P P P P ++ + +
Sbjct: 1128 GAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPP 1187
Query: 484 AGSGAPEP-LDGAEPAKESGLGAEE 507
GAP P G A +G+G E+
Sbjct: 1188 GPPGAPGPCCGGVGAAAIAGIGGEK 1212
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 82.8 bits (203), Expect = 1e-15
Identities = 151/604 (25%), Positives = 184/604 (30%), Gaps = 136/604 (22%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGPP-PPHPQ------------RGLGLATGASGPAG 315
G PGPP R GED GPPGPP PP P +G+GL G G G
Sbjct: 42 GERGPPGPPG----RDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLMG 97
Query: 316 PGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDP------- 368
P GP G AG P+ G + P P G P G P
Sbjct: 98 PRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERG 157
Query: 369 VLGAGEPKGGPGT----------GSGG--------GGAGTGGGAGGPGASHLPPGAGAG- 409
V+G +G PGT G G G G G G PG + P GA
Sbjct: 158 VVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARG 217
Query: 410 -PGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAA----------------- 451
PG P+GA +V A + P +P A
Sbjct: 218 LPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAG 277
Query: 452 --------------GSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAG-SGAPEPLDGAE 496
G + P P A A AA A A G G P P+ A
Sbjct: 278 PAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAG 337
Query: 497 PAKESGLGAEERCPSALSRGPLDEDGTDEALPPPLAPLPP----------------PPPP 540
GL E A S+G G + P P P PP P
Sbjct: 338 ATGARGLVGEP--GPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGP 395
Query: 541 PARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYV---------- 590
P +GS S P + GS R A G RGP AG G
Sbjct: 396 PGLRGSPGSRGLPGADGRAGVMGPPGS-RGASGPAGVRGPNGDAGRPGEPGLMGPRGLPG 454
Query: 591 SPDFLSEGSSSYNSASPDVDTADEP-----------EVDVESNRFPDDEDAQEETEPSAP 639
SP + P +D P + + P + + + A
Sbjct: 455 SPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAG 514
Query: 640 SAGG----GPDG----EQPTGPPSAT-SSGADGPANSPD-GGSPRPRRRLGPPPAGRPAF 689
AG GPDG + P GP G GP P G P P G G+P
Sbjct: 515 LAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAG--EVGKPGE 572
Query: 690 GDLAAEDLVRRP-----ERSPPSGGGGYELREPCGPLGGPAPAKVFAPERDEHVKSAAVA 744
L E + P ER PP G P GP+G P+ P+ ++ A
Sbjct: 573 RGLHGEFGLPGPAGPRGERGPPGESGA---AGPTGPIGSRGPSGPPGPDGNKGEPGVVGA 629
Query: 745 LGPA 748
+G A
Sbjct: 630 VGTA 633
Score = 72.4 bits (176), Expect = 2e-12
Identities = 124/499 (24%), Positives = 156/499 (31%), Gaps = 76/499 (15%)
Query: 289 AAGPPG-PPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPP 347
+AGPPG P P P+ +G A G +GPAGP GP G G+ GL + PP
Sbjct: 251 SAGPPGFPGAPGPKGEIG-AVGNAGPAGPAGPRGEVGLP------------GLSGPVGPP 297
Query: 348 LFPHPYGFPTAFGLCPKKDDPVL-------GAGEPKGGPGTGSGGGGAGTGG--GAGGPG 398
G P A GL K L G P+G PG G G G G GP
Sbjct: 298 ------GNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPA 351
Query: 399 ASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPVPS 458
S G PG PSG A +A P P + L
Sbjct: 352 GSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGL---- 407
Query: 459 YPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEERCPSALSRGPL 518
P A +A + + A+ A G D P + +G S + GP
Sbjct: 408 -PGADGRAGVMGPPGSRGASGPAGVRGPNG----DAGRPGEPGLMGPRGLPGSPGNIGPA 462
Query: 519 DEDGTDEALPPPLAPLPPPPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPAR 578
++G P + P P P +G + P K G A AG
Sbjct: 463 GKEGPVGL--PGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARG 520
Query: 579 GPGPGAGSG--GYVSPDFLSEGSSSYNSASP------DVDTADEPEVDVESNR------- 623
PGP +G G P + G P + EV R
Sbjct: 521 APGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFG 580
Query: 624 FPDDEDAQEETEPSAPSAGGGPDG----EQPTGPPSATSS-------GADGPANSPDGGS 672
P + E P S GP G P+GPP + GA G A P G S
Sbjct: 581 LPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTA-GPSGPS 639
Query: 673 PRP-RRRLGPPPAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGPLGGPAPAKVFA 731
P R P G+ G+ + P R G G +G P PA
Sbjct: 640 GLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAP--------GAVGAPGPAGATG 691
Query: 732 PERDEHVKSAAVALGPAAS 750
+ A GP S
Sbjct: 692 DRGEAGAAGPAGPAGPRGS 710
Score = 67.0 bits (162), Expect = 8e-11
Identities = 112/437 (25%), Positives = 139/437 (31%), Gaps = 57/437 (13%)
Query: 275 GPPPHKSLR--CGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIP 332
GPP G + GP GPP P +G GA G AGP GP G G R IP
Sbjct: 592 GPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIP 651
Query: 333 VPSKGF----GLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGA 388
KG GL ++ P G P A G G G G G A
Sbjct: 652 -GGKGEKGEPGLRGEIGNPGRDGARGAPGAVG--------APGPAGATGDRGEAGAAGPA 702
Query: 389 GTGGGAGGPG----ASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTF 444
G G G PG P AGP G A QP GA + A V PT
Sbjct: 703 GPAGPRGSPGERGEVGPAGPNGFAGPAGAA----GQP-GAKGERGAKGPKGENGVVGPTG 757
Query: 445 PMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLG 504
P+ A P+ P + ++ AA +G P P + P G
Sbjct: 758 PV---GAAGPAGPNGPPGPAGSRG-DGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPA 813
Query: 505 AEE--RCPSALSRGPLDEDGTDEALPPP-------------LAPLPPPPPPPARKGSYVS 549
+E R P +GP+ G A+ PP A P P P G+
Sbjct: 814 GKEGLRGPRG-DQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGI 872
Query: 550 AFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDV 609
P + + + G+ E G A PG G + GS N A +
Sbjct: 873 LGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPG--------AVGSPGVNGAPGEA 924
Query: 610 DTADEPEVDVESNRFPDDEDAQEETEP---SAPSAGGGPDGEQPTGPPSATSSGADGPAN 666
P D R E P A G P P GP + + +
Sbjct: 925 GRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPS 984
Query: 667 SPDG--GSPRPRRRLGP 681
P G G+ PR GP
Sbjct: 985 GPVGPAGAVGPRGPSGP 1001
Score = 66.2 bits (160), Expect = 1e-10
Identities = 141/532 (26%), Positives = 167/532 (31%), Gaps = 121/532 (22%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGPP----------PPHPQRGLGLATGASGPAGPGG 318
GA APGP G + A GPPGP PP P GL G SGPAG G
Sbjct: 517 GARGAPGPD-------GNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGL-PGPSGPAGEVG 568
Query: 319 PGGGAGVRSYPVIPVPSKGFGLLQKLPP-------PLFP----HPYGFPTAFGLCPKKDD 367
G G+ +P P+ G ++ PP P P P G P G K +
Sbjct: 569 KPGERGLHGEFGLPGPAGPRG--ERGPPGESGAAGPTGPIGSRGPSGPPGPDG---NKGE 623
Query: 368 P----VLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHL-----PPGAGAGPGGGAMFWG 418
P +G P G G G AG GG G G L PG G
Sbjct: 624 PGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGA 683
Query: 419 HQPSGAAKDAAAVAAAAAAATVYPTFPMFWPA-------------AGSLPVPSYPAAQSQ 465
P+GA D AA A P P P AG P A+ +
Sbjct: 684 PGPAGATGDRGEAGAAGPAG---PAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGE 740
Query: 466 AKAVAAAVAAAAAAAAAAAGSGAPEPLDGAE-PAKESGLGAEERCPSALSRGPLDEDGTD 524
A G+ P +G PA G G P ++ P T
Sbjct: 741 RGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGG----PPGMTGFPGAAGRTG 796
Query: 525 EALPPPLAPLPPPPPPPARKG--------------SYVSAFRPVVKDTESIAKLYGSARE 570
P ++ P PP P ++G V A P A G + E
Sbjct: 797 PPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGP-----PGFAGEKGPSGE 851
Query: 571 AYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTA-DEPEVDVESNRFPDDED 629
A AGP PGP G +P L S P V A EP
Sbjct: 852 AGTAGPPGTPGP---QGLLGAPGILGLPGSRGERGLPGVAGAVGEP-------------- 894
Query: 630 AQEETEPSAPSAGGGPDGEQPTGPPSATSS----GADGPANSPDG--GSPRPRRRLGPP- 682
P GP G + GPP A S GA G A DG G+ P R G P
Sbjct: 895 --------GPLGIAGPPGAR--GPPGAVGSPGVNGAPGEAGR-DGNPGNDGPPGRDGQPG 943
Query: 683 -PAGRPAFGDLAAEDLVRRPERSPPSG-GGGYELREPCGPLGGPAPAKVFAP 732
R G++ P P G G + R GP G PA P
Sbjct: 944 HKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGP 995
Score = 60.8 bits (146), Expect = 5e-09
Identities = 125/462 (27%), Positives = 148/462 (32%), Gaps = 68/462 (14%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRG-------LGLA-----------TGA 310
G + PGP R GE G PGP P G GLA GA
Sbjct: 472 GIDGRPGPIGPAGAR-GEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGA 530
Query: 311 SGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPPLFP-HPYGFPTAFGLCPKKDDPV 369
GP GP G GG G + P P GF Q LP P P G P GL + P
Sbjct: 531 QGPPGPQGVQGGKGEQGPPGPP----GF---QGLPGPSGPAGEVGKPGERGLHGEFGLP- 582
Query: 370 LGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAA 429
G P+G G G AG G G G S PPG G + +G + +
Sbjct: 583 -GPAGPRGERGPPGESGAAGPTGPIGSRGPSG-PPGPDGNKGEPGVVGAVGTAGPSGPSG 640
Query: 430 AVAAAAAAATVYPTFPMFWPA-AGSLPVPSYPAAQSQAKAVAAAVAAAA------AAAAA 482
AA P G + P A+ AV A A A A AA
Sbjct: 641 LPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAG 700
Query: 483 AAGSGAPEPLDG-------AEPAKESGLGAEERCPSAL----SRGPLDEDGTDEALPPPL 531
AG P G A P +G P A ++GP E+G P
Sbjct: 701 PAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVG 760
Query: 532 APLPP-PPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYV 590
A P P PP GS P + A G + +GP PGP AG G
Sbjct: 761 AAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGP-AGKEGLR 819
Query: 591 SPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQP 650
P G + +V P F ++ E + P GP G
Sbjct: 820 GP----RGDQGPVGRTGEVGAVGPP-------GFAGEKGPSGEAGTAGPPGTPGPQGLLG 868
Query: 651 TG-----PPSATSSGADGPANSPDGGSPRPRRRLGPPPAGRP 687
P S G G A + G P P GPP A P
Sbjct: 869 APGILGLPGSRGERGLPGVAGAV--GEPGPLGIAGPPGARGP 908
Score = 55.5 bits (132), Expect = 2e-07
Identities = 105/399 (26%), Positives = 122/399 (30%), Gaps = 84/399 (21%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSY 328
GA GPP G +GPPGPP P + GL G GP G G G G +
Sbjct: 790 GAAGRTGPP-------GPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGF 842
Query: 329 PVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGA 388
PS G PP P P G A G+ + G+ +G PG G
Sbjct: 843 AGEKGPSGEAGTAG---PPGTPGPQGLLGAPGILG-----LPGSRGERGLPGVAGAVGEP 894
Query: 389 GTGGGAGGPGASHLPPGAGAGPG-GGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMF 447
G G AG PGA PPGA PG GA P A +D
Sbjct: 895 GPLGIAGPPGARG-PPGAVGSPGVNGA------PGEAGRDGN------------------ 929
Query: 448 WPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEE 507
P P + + AA GAP P PA + G E
Sbjct: 930 -PGNDGPPGRDGQPGHKGERGYPGNIGPVGAA-------GAPGPHGPVGPAGKHGNRGET 981
Query: 508 RCPSALSRGPLDEDGTDEALPP--PLAP--LPPPPPPPARKGSYVSAFRPVVKDTESIAK 563
GP G A+ P P P + P KG P +K +
Sbjct: 982 --------GPSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGP---RGLPGLKGHNGLQG 1030
Query: 564 LYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVESNR 623
L G A G GP AG G P A D T V R
Sbjct: 1031 LPGIAGHHGDQGAPGSVGP-AGPRGPAGPS---------GPAGKDGRTGHPGTVGPAGIR 1080
Query: 624 FPDDEDAQEETEPSAPSAGGGPDGEQPTGPPSATSSGAD 662
P P+ GP G P GPP + G D
Sbjct: 1081 GPQGHQG--------PAGPPGPPG--PPGPPGVSGGGYD 1109
Score = 53.1 bits (126), Expect = 1e-06
Identities = 54/172 (31%), Positives = 64/172 (37%), Gaps = 19/172 (11%)
Query: 263 NGGTRCGAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGG 322
NG G PP + G AAG GPP P +G SGP GP GP G
Sbjct: 768 NGPPGPAGSRGDGGPPGMT---GFPGAAGRTGPPGP---------SGISGPPGPPGPAGK 815
Query: 323 AGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDP----VLGAGEPKGG 378
G+R P G + + PP F G G P +LGA G
Sbjct: 816 EGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGL 875
Query: 379 PGTGSGGGGAGTGGGAGGPGASHL--PPGAGAGPGG-GAMFWGHQPSGAAKD 427
PG+ G G G G PG + PPGA PG G+ P A +D
Sbjct: 876 PGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRD 927
Score = 42.7 bits (99), Expect = 0.002
Identities = 48/174 (27%), Positives = 57/174 (32%), Gaps = 25/174 (14%)
Query: 628 EDAQEETEPSAPSAGGGPDGEQ-PTGPPSATSSGADGPANSPDGGSPRPRRRLGPP-PAG 685
+ QEET P+ GP GE+ P GPP G DGP P GPP P G
Sbjct: 23 QSLQEETVRKGPAGDRGPRGERGPPGPPG--RDGEDGPTGPP-----------GPPGPPG 69
Query: 686 RPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGPLGGPAPAKVFAPERDEHVKSAAVAL 745
P G A + P G R P G G P P P +
Sbjct: 70 PPGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQT--- 126
Query: 746 GPAASYVCTPEAHEPDKEDNHSPADDLETRKSYPDQRSISQPSPANTDRGEDGL 799
GPA A P + D + P +R + P A G GL
Sbjct: 127 GPAG-------ARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGL 173
>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
Length = 663
Score = 82.4 bits (202), Expect = 2e-15
Identities = 107/354 (30%), Positives = 132/354 (37%), Gaps = 80/354 (22%)
Query: 264 GGTRCGAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGG- 322
GG GA+ + PPP L + PP PPPP P G T SG G G G
Sbjct: 139 GGGSSGAQPSAPPPPAPPL---PPTPSPPPPPPPPPPPALSGYTTTNSGGGGSSGKGHSR 195
Query: 323 --------------AGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDP 368
A + P+ G G Q PP PH G +
Sbjct: 196 DFVLRRDLSATAPAAAMHGAPLGGEQRSGTGSPQHPAPP--PHSAGMFIS---------- 243
Query: 369 VLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDA 428
+G+ G G+GG A P A H PGA PGG H +G +
Sbjct: 244 -----------ASGTYAGPDGSGGPALFP-ALHDTPGA---PGGHP----HPLNGQMRLG 284
Query: 429 AAVAAAAAAATVYPTF-PMFWPAAGSLPVPSYPAAQSQAK----AVAAAVAAAAAAAAAA 483
A AAAAAAA +Y P F P +G + AA + A AV + AAAAAAAA
Sbjct: 285 LAAAAAAAAAELYGRAEPPFAPRSGDAHYGAVAAAAAAALHGYGAVNLNLNLAAAAAAAA 344
Query: 484 AGSG------APEPLDGAEPAKESGLGAEE-RCPSALS------RGPLDED------GTD 524
AG G AP P PA P A R P+ ++ D
Sbjct: 345 AGPGPHLQHHAPPPAPPPPPAPAQHPHQHHPHLPGAAGAFLRYMRQPIKQELICKWIDPD 404
Query: 525 E--ALPPPLAPLPPPPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGP 576
E LPPP P PPPPPPP G+ +P K ++ +L + GP
Sbjct: 405 ELAGLPPPPPPPPPPPPPPPAGGA-----KPCSKTFGTMHELVNHVTVEHVGGP 453
Score = 40.4 bits (93), Expect = 0.008
Identities = 67/261 (25%), Positives = 83/261 (31%), Gaps = 58/261 (22%)
Query: 458 SYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEERCPSALSRGP 517
S P+ A A A AA AAA A G+ G+ P GA+ P P
Sbjct: 105 SPPSQAFPAHPEAPAAAARAAALVAHPGA-------GSYPCGGGSSGAQPSAPPP-PAPP 156
Query: 518 LDEDGTDEALPPPLAPLPPPPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPA 577
L P P P PPPPPPP Y +
Sbjct: 157 LP--------PTPSPPPPPPPPPPPALSGYTTT--------------------------- 181
Query: 578 RGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTA---DEPEVDVESNRFPDDEDAQEET 634
G G SG S DF+ S + + + A E S + P
Sbjct: 182 -NSGGGGSSGKGHSRDFVLRRDLSATAPAAAMHGAPLGGEQRSGTGSPQHPAPPPHSAGM 240
Query: 635 EPSAPSAGGGPDGEQPTGPPSATSSGADGPANSPDGGSPRP---RRRLGPPPAGRPAFGD 691
SA GPDG +G P+ + D P GG P P + RLG A A +
Sbjct: 241 FISASGTYAGPDG---SGGPALFPALHDTP--GAPGGHPHPLNGQMRLGLAAAAAAAAAE 295
Query: 692 LAAEDLVRRPERSPPSGGGGY 712
L P +P SG Y
Sbjct: 296 LYGR---AEPPFAPRSGDAHY 313
Score = 30.4 bits (67), Expect = 7.9
Identities = 75/288 (26%), Positives = 91/288 (31%), Gaps = 91/288 (31%)
Query: 384 GGGGAGTGGGAGG-------PGASHLPPGAGAGP-------------------GGGAMFW 417
G G GGG+ G P A LPP P GGG+
Sbjct: 132 GAGSYPCGGGSSGAQPSAPPPPAPPLPPTPSPPPPPPPPPPPALSGYTTTNSGGGGSSGK 191
Query: 418 GHQPSGA-AKDAAAVAAAAA-----------AATVYPTFP--------MFWPAAGSLPVP 457
GH +D +A A AAA + T P P MF A+G+ P
Sbjct: 192 GHSRDFVLRRDLSATAPAAAMHGAPLGGEQRSGTGSPQHPAPPPHSAGMFISASGTYAGP 251
Query: 458 S-------YPAAQSQAKAVAA----------AVAAAAAAAAAAAGSGAPEP--------- 491
+PA A AAAAAAAAA G EP
Sbjct: 252 DGSGGPALFPALHDTPGAPGGHPHPLNGQMRLGLAAAAAAAAAELYGRAEPPFAPRSGDA 311
Query: 492 ----LDGAEPAKESGLGAEE------RCPSALSRGP---LDEDGTDEALPPPLAPLPPP- 537
+ A A G GA +A + GP L A PPP AP P
Sbjct: 312 HYGAVAAAAAAALHGYGAVNLNLNLAAAAAAAAAGPGPHLQHHAPPPAPPPPPAPAQHPH 371
Query: 538 ---PPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGP 582
P P G+++ R +K E I K + E G P P P
Sbjct: 372 QHHPHLPGAAGAFLRYMRQPIKQ-ELICK-WIDPDELAGLPPPPPPPP 417
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 80.9 bits (198), Expect = 5e-15
Identities = 129/476 (27%), Positives = 155/476 (32%), Gaps = 41/476 (8%)
Query: 274 PGPPPHKSLR--CGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVI 331
PG K R G+ G GP P QRG ATG SG G G G G +
Sbjct: 733 PGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGL 792
Query: 332 PVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGTG 391
P P G PP P G P G + + G P G PG G AG
Sbjct: 793 PGPQGPNGFPGPKGPPGPPGKDGLPGHPG--QRGEVGFQGKTGPPGPPGVVGPQGAAGET 850
Query: 392 GGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAA--VAAAAAAATVYPTFPMFWP 449
G G G PG PG + P A K+ A P +P
Sbjct: 851 GPMGERG----HPGPPGPPGEQGL-----PGTAGKEGTKGDPGPPGAPGKDGPAGLRGFP 901
Query: 450 AAGSLP-VPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAP-EPLDGAEPAKESGLGAEE 507
LP P + A + AAGSG P P P G E+
Sbjct: 902 GERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEK 961
Query: 508 RCPSALSRGPLDEDGTDEALPPPLAPLPPPPPPPA-RKGSYVSAFRPVVKDTESIAKLYG 566
P +GP+ G D P P P PP A G P K T+ +G
Sbjct: 962 GVPG--EKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHG 1019
Query: 567 SAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTA--DEPEVDVESNRF 624
GP PG AG+ G + G + A D T + P +
Sbjct: 1020 PPGPPGPIGPVGQPG-AAGADGEPG----ARGPQGHFGAKGDEGTRGFNGPPGPIGLQGL 1074
Query: 625 PDDEDAQEETEPSAPSAGGGPDGEQPTGPPSATSSGADGPANSPDGGSPRPRRRLGPP-P 683
P + ET P GP G P GP A +GADGP P G LGPP
Sbjct: 1075 PGPSGEKGETGDVGPMGPPGPPG--PRGP--AGPNGADGPQGPPGGVG-----NLGPPGE 1125
Query: 684 AGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGPLGGPAPAKVFAPERDEHVK 739
G P G+ + + P P G G + G G P P P D+ K
Sbjct: 1126 KGEP--GESGSPGIQGEPGVKGPRGERGE--KGESGQPGEPGPPGPKGPTGDDGPK 1177
Score = 70.9 bits (172), Expect = 5e-12
Identities = 137/548 (25%), Positives = 173/548 (31%), Gaps = 121/548 (22%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSY 328
G + PG P K R G+ A G PGPP +RG G G G GP G G +
Sbjct: 473 GFDGLPGLPGEKGHR-GDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGP 531
Query: 329 PVIPVP--------------------------SKGFGLLQKLPPP---LFPH----PYGF 355
P IP P +G Q LP P + PH P G
Sbjct: 532 PGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGK 591
Query: 356 PTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAM 415
P G+ P D P G+ +G PGT G +G G G PG P G G
Sbjct: 592 PGLPGM-PGSDGPPGHPGK-EGPPGTKGNQGPSGPQGPLGYPG-----PRGVKGVDGIRG 644
Query: 416 FWGHQ--------------------------PSGAAKDAAAVAAAAAAATVYPTFPMFWP 449
GH+ P +D T P P
Sbjct: 645 LKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMG 704
Query: 450 AAGSLPV---PSYPAAQSQAKAVAAAVAAAAAAAAAAAG-SGAPEPLDGAEPAKESG-LG 504
G L V P YP Q ++ A+ A G SG P P G G
Sbjct: 705 EKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRG 764
Query: 505 AEERCPSALSRGPLDEDGT-----DEALPPPL------APLPPPPPP--------PARKG 545
+ ++G DG + LP P P PP PP P ++G
Sbjct: 765 PRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRG 824
Query: 546 SYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSA 605
+ + G+A E G PGP G P + + +
Sbjct: 825 EVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPG 884
Query: 606 SPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGP---DGEQPTGPPSATSSGAD 662
P D P FP E P GGP E P+GPP
Sbjct: 885 PPGAPGKDGP---AGLRGFPG--------ERGLPGTAGGPGLKGNEGPSGPP-------- 925
Query: 663 GPANSP-DGGSPRPRRRLGPPPAGRPAFGDLAAEDLVRRPERSP--PSGGGGYELREPCG 719
GPA SP + G+ +GPP P AA + E+ P P+G G + G
Sbjct: 926 GPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQ-----G 980
Query: 720 PLGGPAPA 727
P+G P PA
Sbjct: 981 PVGLPGPA 988
Score = 64.7 bits (156), Expect = 4e-10
Identities = 91/325 (28%), Positives = 108/325 (33%), Gaps = 52/325 (16%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGP-------GGPG- 320
G + PGP K GE GP GPP P RG GA GP GP G PG
Sbjct: 1070 GLQGLPGPSGEK----GETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGE 1125
Query: 321 -------GGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYG--FPTAFGLCPKKDDPVLG 371
G G++ P + P G + P P P G PT PV
Sbjct: 1126 KGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGF 1185
Query: 372 AGEPKGGPGTGSGGGGAGTGG-----------GAGGPGASHLPPG--AGAGPGGGAMFWG 418
G+P G PG G G G G G+ GP + PPG GP G G
Sbjct: 1186 PGDP-GPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEG 1244
Query: 419 HQ-PSGAAKDAAAVAAAAAAATVYPTFPMFWPA-------AGSLPVPSYPAAQSQA---- 466
Q GA D A+ A V P P P GS+ P A QA
Sbjct: 1245 RQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPG 1304
Query: 467 KAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEERCP----SALSRGPLDEDG 522
+ A A G P + P E G + P S +G + G
Sbjct: 1305 PVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPG 1364
Query: 523 TDEALPPPLAP-LPPPPPPPARKGS 546
+ P P LP P P KG+
Sbjct: 1365 ASGPIGPGGPPGLPGPAGPKGAKGA 1389
Score = 55.5 bits (132), Expect = 2e-07
Identities = 119/485 (24%), Positives = 137/485 (28%), Gaps = 65/485 (13%)
Query: 264 GGTRCGAEMAPGPPPHKSLRCGEDEAAG------PPGPPPPHPQRGLGLATGASGPAGPG 317
GG P PP + GE AAG PPG P P G G G GP
Sbjct: 911 GGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPI 970
Query: 318 GPGGGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKG 377
GP G GV+ +P P+ G+ + G P G K G P G
Sbjct: 971 GPTGRDGVQGPVGLPGPAGPPGVAGEDGD---KGEVGDPGQKGTKGNK-----GEHGPPG 1022
Query: 378 GPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAA 437
PG G G G G PGA P G G + P G +
Sbjct: 1023 PPGPIGPVGQPGAAGADGEPGARG-PQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEK 1081
Query: 438 ATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEP 497
PM P P P PA + A G P + P
Sbjct: 1082 GETGDVGPMGPPGP---PGPRGPAGPN----------------GADGPQGPPGGVGNLGP 1122
Query: 498 AKESGLGAEERCPSALS----RGPLDEDGTDEALPPPLAPLPPPPPPPARKGSYVSAFRP 553
E G E P +GP E G P P PP P P P
Sbjct: 1123 PGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGP 1182
Query: 554 VVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTAD 613
V + G R GA RG G G P + P
Sbjct: 1183 VGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGS 1242
Query: 614 EPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPPS-ATSSGADG----PANSP 668
E + + P A G P P GP A G DG P +
Sbjct: 1243 EGRQGGKGAK-------------GDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVG 1289
Query: 669 DGGSPRPRRRLGPP-PAGRPAF----GDLAAEDLVRRPER----SPPSGGGGYELREPCG 719
G P + GPP P G P GD A+ P PP G R G
Sbjct: 1290 QQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPG 1349
Query: 720 PLGGP 724
P G P
Sbjct: 1350 PQGSP 1354
Score = 47.0 bits (110), Expect = 8e-05
Identities = 123/488 (25%), Positives = 154/488 (31%), Gaps = 83/488 (17%)
Query: 275 GPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAG-----PGGPGGGAGVRSYP 329
GPP + G G PG P + GL + GA GP G P G G G +
Sbjct: 325 GPPGIQ----GNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPV 380
Query: 330 VIPVPSKGFGLLQKL-------PPPL----FPHPYGFPTAFGLCPKKDDPVLGAGEPKGG 378
V ++ +LQ+ P P+ P P G P + GL + D LG P+G
Sbjct: 381 VAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGD--LGPQGPRGP 438
Query: 379 PGTGSGGGGAGTGGGAGGPGASHLP--PGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAA 436
G G AG G AG GA +P PG G + G D A
Sbjct: 439 QGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGP 498
Query: 437 AATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAE 496
LP S P K G +DG +
Sbjct: 499 PGEDGERGDDGEIGPRGLPGESGPRGLLGPK-----------GPPGIPGPPGVRGMDGPQ 547
Query: 497 PAKESGLGAEERCPSALSRGPLDEDGT--DEALPPPLAPLPP-----PPPPPARKGSYVS 549
K S LG + GP + GT + LP P + P P P G S
Sbjct: 548 GPKGS-LGPQG------EPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGS 600
Query: 550 AFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSG--------GYVSPDFLSEGSSS 601
P E G+ + GP PGP G G+ +G
Sbjct: 601 DGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKG----EKGEDG 656
Query: 602 YNSASPDVDT-ADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPPSATSSG 660
+ D+ D EV V +R D P P GP G+ GPP G
Sbjct: 657 FPGFKGDIGVKGDRGEVGVPGSRGEDG--------PEGPKGRTGPTGD--PGPPGL--MG 704
Query: 661 ADGPANSPDGGSPRPRRRLGPPPA-GRPAFGDLAAEDLVR-RPERSPPSGGGGYELREPC 718
G P G P R GP + G P F + E R +S P G G P
Sbjct: 705 EKGKLGVP--GLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERG-----PT 757
Query: 719 GPLGGPAP 726
GP G P
Sbjct: 758 GPRGQRGP 765
Score = 47.0 bits (110), Expect = 8e-05
Identities = 52/162 (32%), Positives = 56/162 (34%), Gaps = 32/162 (19%)
Query: 269 GAEMAPGPPPHKSLR--CGEDEAAGPPGPPPPHPQRGL-GL--------------ATGAS 311
G + GPP R G D A G PG P RG GL A G
Sbjct: 437 GPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLP 496
Query: 312 GPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLG 371
GP G G G G +P S GLL PP P P G V G
Sbjct: 497 GPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPG--------------VRG 542
Query: 372 AGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGA-GPGG 412
P+G G+ G G G G PG LP GA GP G
Sbjct: 543 MDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHG 584
Score = 44.7 bits (104), Expect = 4e-04
Identities = 115/480 (23%), Positives = 145/480 (30%), Gaps = 101/480 (21%)
Query: 267 RCGAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVR 326
R GA+ A G P ++ G+ G PG P RG A G GP G G G G
Sbjct: 453 RAGADGARGMPGDPGVK-GDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEI 511
Query: 327 SYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGG 386
+P S GLL PP P P G V G P+G G+
Sbjct: 512 GPRGLPGESGPRGLLGPKGPPGIPGPPG--------------VRGMDGPQGPKGS----- 552
Query: 387 GAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPM 446
G G G PG PG PG H G P P
Sbjct: 553 -LGPQGEPGPPGQQG-TPGTQGLPGPQGAIGPHGEKGPQGKPG-----------LPGMP- 598
Query: 447 FWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAE 506
GS P +P + + G + +DG K
Sbjct: 599 -----GSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKG------ 647
Query: 507 ERCPSALSRGPLDEDGTDEALPPPLAPLPPPPPPPARKGSYVSAFRPVVKDTESIAKLYG 566
+G EDG P KG VK + G
Sbjct: 648 -------HKGEKGEDGF-----------------PGFKGDI------GVKGDRGEVGVPG 677
Query: 567 SAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFP- 625
S E GP GP G P + E P P+ + FP
Sbjct: 678 SRGEDGPEGPKGRTGPTGDPG---PPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPG 734
Query: 626 --DDEDAQEETEPSAPSAGGGPDGEQ-PTGPPSAT-------SSGADGPANSP-DGGSPR 674
++ A+ + S P GP G + GP AT +SG DGP P + G P
Sbjct: 735 ASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPG 794
Query: 675 PRRRLG-PPPAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGPLGGPAPAKVFAPE 733
P+ G P P G P G + L P + G G++ G G P P V P+
Sbjct: 795 PQGPNGFPGPKGPP--GPPGKDGLPGHPGQ---RGEVGFQ-----GKTGPPGPPGVVGPQ 844
Score = 41.2 bits (95), Expect = 0.004
Identities = 26/63 (41%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 274 PGPP--PHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVI 331
PGP P + G A+GP GP P G GA G GPGGP G GV+ P
Sbjct: 1348 PGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGH 1407
Query: 332 PVP 334
P P
Sbjct: 1408 PGP 1410
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 80.9 bits (198), Expect = 5e-15
Identities = 129/476 (27%), Positives = 155/476 (32%), Gaps = 41/476 (8%)
Query: 274 PGPPPHKSLR--CGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVI 331
PG K R G+ G GP P QRG ATG SG G G G G +
Sbjct: 712 PGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGL 771
Query: 332 PVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGTG 391
P P G PP P G P G + + G P G PG G AG
Sbjct: 772 PGPQGPNGFPGPKGPPGPPGKDGLPGHPG--QRGEVGFQGKTGPPGPPGVVGPQGAAGET 829
Query: 392 GGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAA--VAAAAAAATVYPTFPMFWP 449
G G G PG PG + P A K+ A P +P
Sbjct: 830 GPMGERG----HPGPPGPPGEQGL-----PGTAGKEGTKGDPGPPGAPGKDGPAGLRGFP 880
Query: 450 AAGSLP-VPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAP-EPLDGAEPAKESGLGAEE 507
LP P + A + AAGSG P P P G E+
Sbjct: 881 GERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEK 940
Query: 508 RCPSALSRGPLDEDGTDEALPPPLAPLPPPPPPPA-RKGSYVSAFRPVVKDTESIAKLYG 566
P +GP+ G D P P P PP A G P K T+ +G
Sbjct: 941 GVPG--EKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHG 998
Query: 567 SAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTA--DEPEVDVESNRF 624
GP PG AG+ G + G + A D T + P +
Sbjct: 999 PPGPPGPIGPVGQPG-AAGADGEPG----ARGPQGHFGAKGDEGTRGFNGPPGPIGLQGL 1053
Query: 625 PDDEDAQEETEPSAPSAGGGPDGEQPTGPPSATSSGADGPANSPDGGSPRPRRRLGPP-P 683
P + ET P GP G P GP A +GADGP P G LGPP
Sbjct: 1054 PGPSGEKGETGDVGPMGPPGPPG--PRGP--AGPNGADGPQGPPGGVG-----NLGPPGE 1104
Query: 684 AGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGPLGGPAPAKVFAPERDEHVK 739
G P G+ + + P P G G + G G P P P D+ K
Sbjct: 1105 KGEP--GESGSPGIQGEPGVKGPRGERGE--KGESGQPGEPGPPGPKGPTGDDGPK 1156
Score = 70.9 bits (172), Expect = 5e-12
Identities = 137/548 (25%), Positives = 173/548 (31%), Gaps = 121/548 (22%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSY 328
G + PG P K R G+ A G PGPP +RG G G G GP G G +
Sbjct: 452 GFDGLPGLPGEKGHR-GDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGP 510
Query: 329 PVIPVP--------------------------SKGFGLLQKLPPP---LFPH----PYGF 355
P IP P +G Q LP P + PH P G
Sbjct: 511 PGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGK 570
Query: 356 PTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAM 415
P G+ P D P G+ +G PGT G +G G G PG P G G
Sbjct: 571 PGLPGM-PGSDGPPGHPGK-EGPPGTKGNQGPSGPQGPLGYPG-----PRGVKGVDGIRG 623
Query: 416 FWGHQ--------------------------PSGAAKDAAAVAAAAAAATVYPTFPMFWP 449
GH+ P +D T P P
Sbjct: 624 LKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMG 683
Query: 450 AAGSLPV---PSYPAAQSQAKAVAAAVAAAAAAAAAAAG-SGAPEPLDGAEPAKESG-LG 504
G L V P YP Q ++ A+ A G SG P P G G
Sbjct: 684 EKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRG 743
Query: 505 AEERCPSALSRGPLDEDGT-----DEALPPPL------APLPPPPPP--------PARKG 545
+ ++G DG + LP P P PP PP P ++G
Sbjct: 744 PRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRG 803
Query: 546 SYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSA 605
+ + G+A E G PGP G P + + +
Sbjct: 804 EVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPG 863
Query: 606 SPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGP---DGEQPTGPPSATSSGAD 662
P D P FP E P GGP E P+GPP
Sbjct: 864 PPGAPGKDGP---AGLRGFPG--------ERGLPGTAGGPGLKGNEGPSGPP-------- 904
Query: 663 GPANSP-DGGSPRPRRRLGPPPAGRPAFGDLAAEDLVRRPERSP--PSGGGGYELREPCG 719
GPA SP + G+ +GPP P AA + E+ P P+G G + G
Sbjct: 905 GPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQ-----G 959
Query: 720 PLGGPAPA 727
P+G P PA
Sbjct: 960 PVGLPGPA 967
Score = 64.7 bits (156), Expect = 4e-10
Identities = 91/325 (28%), Positives = 108/325 (33%), Gaps = 52/325 (16%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGP-------GGPG- 320
G + PGP K GE GP GPP P RG GA GP GP G PG
Sbjct: 1049 GLQGLPGPSGEK----GETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGE 1104
Query: 321 -------GGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYG--FPTAFGLCPKKDDPVLG 371
G G++ P + P G + P P P G PT PV
Sbjct: 1105 KGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGF 1164
Query: 372 AGEPKGGPGTGSGGGGAGTGG-----------GAGGPGASHLPPG--AGAGPGGGAMFWG 418
G+P G PG G G G G G+ GP + PPG GP G G
Sbjct: 1165 PGDP-GPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEG 1223
Query: 419 HQ-PSGAAKDAAAVAAAAAAATVYPTFPMFWPA-------AGSLPVPSYPAAQSQA---- 466
Q GA D A+ A V P P P GS+ P A QA
Sbjct: 1224 RQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPG 1283
Query: 467 KAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEERCP----SALSRGPLDEDG 522
+ A A G P + P E G + P S +G + G
Sbjct: 1284 PVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPG 1343
Query: 523 TDEALPPPLAP-LPPPPPPPARKGS 546
+ P P LP P P KG+
Sbjct: 1344 ASGPIGPGGPPGLPGPAGPKGAKGA 1368
Score = 55.5 bits (132), Expect = 2e-07
Identities = 119/485 (24%), Positives = 137/485 (28%), Gaps = 65/485 (13%)
Query: 264 GGTRCGAEMAPGPPPHKSLRCGEDEAAG------PPGPPPPHPQRGLGLATGASGPAGPG 317
GG P PP + GE AAG PPG P P G G G GP
Sbjct: 890 GGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPI 949
Query: 318 GPGGGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKG 377
GP G GV+ +P P+ G+ + G P G K G P G
Sbjct: 950 GPTGRDGVQGPVGLPGPAGPPGVAGEDGD---KGEVGDPGQKGTKGNK-----GEHGPPG 1001
Query: 378 GPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAA 437
PG G G G G PGA P G G + P G +
Sbjct: 1002 PPGPIGPVGQPGAAGADGEPGARG-PQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEK 1060
Query: 438 ATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEP 497
PM P P P PA + A G P + P
Sbjct: 1061 GETGDVGPMGPPGP---PGPRGPAGPN----------------GADGPQGPPGGVGNLGP 1101
Query: 498 AKESGLGAEERCPSALS----RGPLDEDGTDEALPPPLAPLPPPPPPPARKGSYVSAFRP 553
E G E P +GP E G P P PP P P P
Sbjct: 1102 PGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGP 1161
Query: 554 VVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTAD 613
V + G R GA RG G G P + P
Sbjct: 1162 VGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGS 1221
Query: 614 EPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPPS-ATSSGADG----PANSP 668
E + + P A G P P GP A G DG P +
Sbjct: 1222 EGRQGGKGAK-------------GDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVG 1268
Query: 669 DGGSPRPRRRLGPP-PAGRPAF----GDLAAEDLVRRPER----SPPSGGGGYELREPCG 719
G P + GPP P G P GD A+ P PP G R G
Sbjct: 1269 QQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPG 1328
Query: 720 PLGGP 724
P G P
Sbjct: 1329 PQGSP 1333
Score = 47.0 bits (110), Expect = 8e-05
Identities = 123/488 (25%), Positives = 154/488 (31%), Gaps = 83/488 (17%)
Query: 275 GPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAG-----PGGPGGGAGVRSYP 329
GPP + G G PG P + GL + GA GP G P G G G +
Sbjct: 304 GPPGIQ----GNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPV 359
Query: 330 VIPVPSKGFGLLQKL-------PPPL----FPHPYGFPTAFGLCPKKDDPVLGAGEPKGG 378
V ++ +LQ+ P P+ P P G P + GL + D LG P+G
Sbjct: 360 VAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGD--LGPQGPRGP 417
Query: 379 PGTGSGGGGAGTGGGAGGPGASHLP--PGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAA 436
G G AG G AG GA +P PG G + G D A
Sbjct: 418 QGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGP 477
Query: 437 AATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAE 496
LP S P K G +DG +
Sbjct: 478 PGEDGERGDDGEIGPRGLPGESGPRGLLGPK-----------GPPGIPGPPGVRGMDGPQ 526
Query: 497 PAKESGLGAEERCPSALSRGPLDEDGT--DEALPPPLAPLPP-----PPPPPARKGSYVS 549
K S LG + GP + GT + LP P + P P P G S
Sbjct: 527 GPKGS-LGPQG------EPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGS 579
Query: 550 AFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSG--------GYVSPDFLSEGSSS 601
P E G+ + GP PGP G G+ +G
Sbjct: 580 DGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKG----EKGEDG 635
Query: 602 YNSASPDVDT-ADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPPSATSSG 660
+ D+ D EV V +R D P P GP G+ GPP G
Sbjct: 636 FPGFKGDIGVKGDRGEVGVPGSRGEDG--------PEGPKGRTGPTGD--PGPPGL--MG 683
Query: 661 ADGPANSPDGGSPRPRRRLGPPPA-GRPAFGDLAAEDLVR-RPERSPPSGGGGYELREPC 718
G P G P R GP + G P F + E R +S P G G P
Sbjct: 684 EKGKLGVP--GLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERG-----PT 736
Query: 719 GPLGGPAP 726
GP G P
Sbjct: 737 GPRGQRGP 744
Score = 47.0 bits (110), Expect = 8e-05
Identities = 52/162 (32%), Positives = 56/162 (34%), Gaps = 32/162 (19%)
Query: 269 GAEMAPGPPPHKSLR--CGEDEAAGPPGPPPPHPQRGL-GL--------------ATGAS 311
G + GPP R G D A G PG P RG GL A G
Sbjct: 416 GPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLP 475
Query: 312 GPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLG 371
GP G G G G +P S GLL PP P P G V G
Sbjct: 476 GPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPG--------------VRG 521
Query: 372 AGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGA-GPGG 412
P+G G+ G G G G PG LP GA GP G
Sbjct: 522 MDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHG 563
Score = 44.7 bits (104), Expect = 4e-04
Identities = 115/480 (23%), Positives = 145/480 (30%), Gaps = 101/480 (21%)
Query: 267 RCGAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVR 326
R GA+ A G P ++ G+ G PG P RG A G GP G G G G
Sbjct: 432 RAGADGARGMPGDPGVK-GDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEI 490
Query: 327 SYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGG 386
+P S GLL PP P P G V G P+G G+
Sbjct: 491 GPRGLPGESGPRGLLGPKGPPGIPGPPG--------------VRGMDGPQGPKGS----- 531
Query: 387 GAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPM 446
G G G PG PG PG H G P P
Sbjct: 532 -LGPQGEPGPPGQQG-TPGTQGLPGPQGAIGPHGEKGPQGKPG-----------LPGMP- 577
Query: 447 FWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAE 506
GS P +P + + G + +DG K
Sbjct: 578 -----GSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKG------ 626
Query: 507 ERCPSALSRGPLDEDGTDEALPPPLAPLPPPPPPPARKGSYVSAFRPVVKDTESIAKLYG 566
+G EDG P KG VK + G
Sbjct: 627 -------HKGEKGEDGF-----------------PGFKGDI------GVKGDRGEVGVPG 656
Query: 567 SAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFP- 625
S E GP GP G P + E P P+ + FP
Sbjct: 657 SRGEDGPEGPKGRTGPTGDPG---PPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPG 713
Query: 626 --DDEDAQEETEPSAPSAGGGPDGEQ-PTGPPSAT-------SSGADGPANSP-DGGSPR 674
++ A+ + S P GP G + GP AT +SG DGP P + G P
Sbjct: 714 ASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPG 773
Query: 675 PRRRLG-PPPAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGPLGGPAPAKVFAPE 733
P+ G P P G P G + L P + G G++ G G P P V P+
Sbjct: 774 PQGPNGFPGPKGPP--GPPGKDGLPGHPGQ---RGEVGFQ-----GKTGPPGPPGVVGPQ 823
Score = 41.2 bits (95), Expect = 0.004
Identities = 26/63 (41%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 274 PGPP--PHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVI 331
PGP P + G A+GP GP P G GA G GPGGP G GV+ P
Sbjct: 1327 PGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGH 1386
Query: 332 PVP 334
P P
Sbjct: 1387 PGP 1389
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 80.9 bits (198), Expect = 5e-15
Identities = 129/476 (27%), Positives = 155/476 (32%), Gaps = 41/476 (8%)
Query: 274 PGPPPHKSLR--CGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVI 331
PG K R G+ G GP P QRG ATG SG G G G G +
Sbjct: 819 PGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGL 878
Query: 332 PVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGTG 391
P P G PP P G P G + + G P G PG G AG
Sbjct: 879 PGPQGPNGFPGPKGPPGPPGKDGLPGHPG--QRGEVGFQGKTGPPGPPGVVGPQGAAGET 936
Query: 392 GGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAA--VAAAAAAATVYPTFPMFWP 449
G G G PG PG + P A K+ A P +P
Sbjct: 937 GPMGERG----HPGPPGPPGEQGL-----PGTAGKEGTKGDPGPPGAPGKDGPAGLRGFP 987
Query: 450 AAGSLP-VPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAP-EPLDGAEPAKESGLGAEE 507
LP P + A + AAGSG P P P G E+
Sbjct: 988 GERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEK 1047
Query: 508 RCPSALSRGPLDEDGTDEALPPPLAPLPPPPPPPA-RKGSYVSAFRPVVKDTESIAKLYG 566
P +GP+ G D P P P PP A G P K T+ +G
Sbjct: 1048 GVPG--EKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHG 1105
Query: 567 SAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTA--DEPEVDVESNRF 624
GP PG AG+ G + G + A D T + P +
Sbjct: 1106 PPGPPGPIGPVGQPG-AAGADGEPG----ARGPQGHFGAKGDEGTRGFNGPPGPIGLQGL 1160
Query: 625 PDDEDAQEETEPSAPSAGGGPDGEQPTGPPSATSSGADGPANSPDGGSPRPRRRLGPP-P 683
P + ET P GP G P GP A +GADGP P G LGPP
Sbjct: 1161 PGPSGEKGETGDVGPMGPPGPPG--PRGP--AGPNGADGPQGPPGGVG-----NLGPPGE 1211
Query: 684 AGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGPLGGPAPAKVFAPERDEHVK 739
G P G+ + + P P G G + G G P P P D+ K
Sbjct: 1212 KGEP--GESGSPGIQGEPGVKGPRGERGE--KGESGQPGEPGPPGPKGPTGDDGPK 1263
Score = 70.9 bits (172), Expect = 5e-12
Identities = 137/548 (25%), Positives = 173/548 (31%), Gaps = 121/548 (22%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSY 328
G + PG P K R G+ A G PGPP +RG G G G GP G G +
Sbjct: 559 GFDGLPGLPGEKGHR-GDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGP 617
Query: 329 PVIPVP--------------------------SKGFGLLQKLPPP---LFPH----PYGF 355
P IP P +G Q LP P + PH P G
Sbjct: 618 PGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGK 677
Query: 356 PTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAM 415
P G+ P D P G+ +G PGT G +G G G PG P G G
Sbjct: 678 PGLPGM-PGSDGPPGHPGK-EGPPGTKGNQGPSGPQGPLGYPG-----PRGVKGVDGIRG 730
Query: 416 FWGHQ--------------------------PSGAAKDAAAVAAAAAAATVYPTFPMFWP 449
GH+ P +D T P P
Sbjct: 731 LKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMG 790
Query: 450 AAGSLPV---PSYPAAQSQAKAVAAAVAAAAAAAAAAAG-SGAPEPLDGAEPAKESG-LG 504
G L V P YP Q ++ A+ A G SG P P G G
Sbjct: 791 EKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRG 850
Query: 505 AEERCPSALSRGPLDEDGT-----DEALPPPL------APLPPPPPP--------PARKG 545
+ ++G DG + LP P P PP PP P ++G
Sbjct: 851 PRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRG 910
Query: 546 SYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSA 605
+ + G+A E G PGP G P + + +
Sbjct: 911 EVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPG 970
Query: 606 SPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGP---DGEQPTGPPSATSSGAD 662
P D P FP E P GGP E P+GPP
Sbjct: 971 PPGAPGKDGP---AGLRGFPG--------ERGLPGTAGGPGLKGNEGPSGPP-------- 1011
Query: 663 GPANSP-DGGSPRPRRRLGPPPAGRPAFGDLAAEDLVRRPERSP--PSGGGGYELREPCG 719
GPA SP + G+ +GPP P AA + E+ P P+G G + G
Sbjct: 1012 GPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQ-----G 1066
Query: 720 PLGGPAPA 727
P+G P PA
Sbjct: 1067 PVGLPGPA 1074
Score = 64.7 bits (156), Expect = 4e-10
Identities = 91/325 (28%), Positives = 108/325 (33%), Gaps = 52/325 (16%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGP-------GGPG- 320
G + PGP K GE GP GPP P RG GA GP GP G PG
Sbjct: 1156 GLQGLPGPSGEK----GETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGE 1211
Query: 321 -------GGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYG--FPTAFGLCPKKDDPVLG 371
G G++ P + P G + P P P G PT PV
Sbjct: 1212 KGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGF 1271
Query: 372 AGEPKGGPGTGSGGGGAGTGG-----------GAGGPGASHLPPG--AGAGPGGGAMFWG 418
G+P G PG G G G G G+ GP + PPG GP G G
Sbjct: 1272 PGDP-GPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEG 1330
Query: 419 HQ-PSGAAKDAAAVAAAAAAATVYPTFPMFWPA-------AGSLPVPSYPAAQSQA---- 466
Q GA D A+ A V P P P GS+ P A QA
Sbjct: 1331 RQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPG 1390
Query: 467 KAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEERCP----SALSRGPLDEDG 522
+ A A G P + P E G + P S +G + G
Sbjct: 1391 PVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPG 1450
Query: 523 TDEALPPPLAP-LPPPPPPPARKGS 546
+ P P LP P P KG+
Sbjct: 1451 ASGPIGPGGPPGLPGPAGPKGAKGA 1475
Score = 55.5 bits (132), Expect = 2e-07
Identities = 119/485 (24%), Positives = 137/485 (28%), Gaps = 65/485 (13%)
Query: 264 GGTRCGAEMAPGPPPHKSLRCGEDEAAG------PPGPPPPHPQRGLGLATGASGPAGPG 317
GG P PP + GE AAG PPG P P G G G GP
Sbjct: 997 GGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPI 1056
Query: 318 GPGGGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKG 377
GP G GV+ +P P+ G+ + G P G K G P G
Sbjct: 1057 GPTGRDGVQGPVGLPGPAGPPGVAGEDGD---KGEVGDPGQKGTKGNK-----GEHGPPG 1108
Query: 378 GPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAA 437
PG G G G G PGA P G G + P G +
Sbjct: 1109 PPGPIGPVGQPGAAGADGEPGARG-PQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEK 1167
Query: 438 ATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEP 497
PM P P P PA + A G P + P
Sbjct: 1168 GETGDVGPMGPPGP---PGPRGPAGPN----------------GADGPQGPPGGVGNLGP 1208
Query: 498 AKESGLGAEERCPSALS----RGPLDEDGTDEALPPPLAPLPPPPPPPARKGSYVSAFRP 553
E G E P +GP E G P P PP P P P
Sbjct: 1209 PGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGP 1268
Query: 554 VVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTAD 613
V + G R GA RG G G P + P
Sbjct: 1269 VGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGS 1328
Query: 614 EPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPPS-ATSSGADG----PANSP 668
E + + P A G P P GP A G DG P +
Sbjct: 1329 EGRQGGKGAK-------------GDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVG 1375
Query: 669 DGGSPRPRRRLGPP-PAGRPAF----GDLAAEDLVRRPER----SPPSGGGGYELREPCG 719
G P + GPP P G P GD A+ P PP G R G
Sbjct: 1376 QQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPG 1435
Query: 720 PLGGP 724
P G P
Sbjct: 1436 PQGSP 1440
Score = 47.0 bits (110), Expect = 8e-05
Identities = 123/488 (25%), Positives = 154/488 (31%), Gaps = 83/488 (17%)
Query: 275 GPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAG-----PGGPGGGAGVRSYP 329
GPP + G G PG P + GL + GA GP G P G G G +
Sbjct: 411 GPPGIQ----GNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPV 466
Query: 330 VIPVPSKGFGLLQKL-------PPPL----FPHPYGFPTAFGLCPKKDDPVLGAGEPKGG 378
V ++ +LQ+ P P+ P P G P + GL + D LG P+G
Sbjct: 467 VAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGD--LGPQGPRGP 524
Query: 379 PGTGSGGGGAGTGGGAGGPGASHLP--PGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAA 436
G G AG G AG GA +P PG G + G D A
Sbjct: 525 QGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGP 584
Query: 437 AATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAE 496
LP S P K G +DG +
Sbjct: 585 PGEDGERGDDGEIGPRGLPGESGPRGLLGPK-----------GPPGIPGPPGVRGMDGPQ 633
Query: 497 PAKESGLGAEERCPSALSRGPLDEDGT--DEALPPPLAPLPP-----PPPPPARKGSYVS 549
K S LG + GP + GT + LP P + P P P G S
Sbjct: 634 GPKGS-LGPQG------EPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGS 686
Query: 550 AFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSG--------GYVSPDFLSEGSSS 601
P E G+ + GP PGP G G+ +G
Sbjct: 687 DGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKG----EKGEDG 742
Query: 602 YNSASPDVDT-ADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPPSATSSG 660
+ D+ D EV V +R D P P GP G+ GPP G
Sbjct: 743 FPGFKGDIGVKGDRGEVGVPGSRGEDG--------PEGPKGRTGPTGD--PGPPGL--MG 790
Query: 661 ADGPANSPDGGSPRPRRRLGPPPA-GRPAFGDLAAEDLVR-RPERSPPSGGGGYELREPC 718
G P G P R GP + G P F + E R +S P G G P
Sbjct: 791 EKGKLGVP--GLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERG-----PT 843
Query: 719 GPLGGPAP 726
GP G P
Sbjct: 844 GPRGQRGP 851
Score = 47.0 bits (110), Expect = 8e-05
Identities = 52/162 (32%), Positives = 56/162 (34%), Gaps = 32/162 (19%)
Query: 269 GAEMAPGPPPHKSLR--CGEDEAAGPPGPPPPHPQRGL-GL--------------ATGAS 311
G + GPP R G D A G PG P RG GL A G
Sbjct: 523 GPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLP 582
Query: 312 GPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLG 371
GP G G G G +P S GLL PP P P G V G
Sbjct: 583 GPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPG--------------VRG 628
Query: 372 AGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGA-GPGG 412
P+G G+ G G G G PG LP GA GP G
Sbjct: 629 MDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHG 670
Score = 44.7 bits (104), Expect = 4e-04
Identities = 115/480 (23%), Positives = 145/480 (30%), Gaps = 101/480 (21%)
Query: 267 RCGAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVR 326
R GA+ A G P ++ G+ G PG P RG A G GP G G G G
Sbjct: 539 RAGADGARGMPGDPGVK-GDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEI 597
Query: 327 SYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGG 386
+P S GLL PP P P G V G P+G G+
Sbjct: 598 GPRGLPGESGPRGLLGPKGPPGIPGPPG--------------VRGMDGPQGPKGS----- 638
Query: 387 GAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPM 446
G G G PG PG PG H G P P
Sbjct: 639 -LGPQGEPGPPGQQG-TPGTQGLPGPQGAIGPHGEKGPQGKPG-----------LPGMP- 684
Query: 447 FWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAE 506
GS P +P + + G + +DG K
Sbjct: 685 -----GSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKG------ 733
Query: 507 ERCPSALSRGPLDEDGTDEALPPPLAPLPPPPPPPARKGSYVSAFRPVVKDTESIAKLYG 566
+G EDG P KG VK + G
Sbjct: 734 -------HKGEKGEDGF-----------------PGFKGDI------GVKGDRGEVGVPG 763
Query: 567 SAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFP- 625
S E GP GP G P + E P P+ + FP
Sbjct: 764 SRGEDGPEGPKGRTGPTGDPG---PPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPG 820
Query: 626 --DDEDAQEETEPSAPSAGGGPDGEQ-PTGPPSAT-------SSGADGPANSP-DGGSPR 674
++ A+ + S P GP G + GP AT +SG DGP P + G P
Sbjct: 821 ASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPG 880
Query: 675 PRRRLG-PPPAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGPLGGPAPAKVFAPE 733
P+ G P P G P G + L P + G G++ G G P P V P+
Sbjct: 881 PQGPNGFPGPKGPP--GPPGKDGLPGHPGQ---RGEVGFQ-----GKTGPPGPPGVVGPQ 930
Score = 41.2 bits (95), Expect = 0.004
Identities = 26/63 (41%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 274 PGPP--PHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVI 331
PGP P + G A+GP GP P G GA G GPGGP G GV+ P
Sbjct: 1434 PGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGH 1493
Query: 332 PVP 334
P P
Sbjct: 1494 PGP 1496
Score = 32.0 bits (71), Expect = 2.7
Identities = 59/231 (25%), Positives = 76/231 (32%), Gaps = 33/231 (14%)
Query: 504 GAEERCPSALSRGPLDEDGTDEALPPPL----------APLPPPPPPPARKGSYVSAFRP 553
G EE + PL+E+ TD +PP PP P Y +R
Sbjct: 297 GEEEEILESSLLPPLEEEQTDLQVPPTADRFQAEEYGEGGTDPPEGPYDYTYGYGDDYR- 355
Query: 554 VVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTAD 613
++TE L SA A+ A GP G G P L G P+
Sbjct: 356 --EETELGPAL--SAETAHSGAAAHGPRGLKGEKG--EPAVLEPGMLVEGPPGPEGPAGL 409
Query: 614 EPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPPSATSSGADGPANSPDGGSP 673
++ N P + E P G P + GPP + P GG
Sbjct: 410 IGPPGIQGNPGP----VGDPGERGPPGRAGLPGSDGAPGPPGTSLM---LPFRFGSGGGD 462
Query: 674 RPRRRLGPPPAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGPLGGP 724
+ GP A + A + R R PP G GY R GPLG P
Sbjct: 463 K-----GPVVAAQEAQAQAILQQ-ARLALRGPP-GPMGYTGRP--GPLGQP 504
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 80.5 bits (197), Expect = 7e-15
Identities = 118/427 (27%), Positives = 147/427 (34%), Gaps = 60/427 (14%)
Query: 289 AAGPPGPPPPHPQRGLGLAT----GASGP--AGPGGPGGGAGVRSYPVIPVPSKGFGLLQ 342
A PP PP P +G AT GAS P A P P G P KG
Sbjct: 1008 APTPPAVTPPSP-KGSPAATPFPKGASTPPAATPPSPKGSPAATPLP------KG---AP 1057
Query: 343 KLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGG---------AGTGGG 393
P P P G P L P PKGGP T S G + GG
Sbjct: 1058 TTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGL 1117
Query: 394 AGGP--GASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAV--AAAAAAATVYPTFPMFWP 449
A P GA P P GG P GA AA + AT P P
Sbjct: 1118 ATPPHKGAPTTPAATPPSPKGGLA--TPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTP 1175
Query: 450 AA------GSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGL 503
AA G L PS A + AA + A + GAP P+ + GL
Sbjct: 1176 AATPPSPKGGLATPSPKGAPT---TPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGL 1232
Query: 504 G--AEERCPSALSRGPLDEDGTDEALPPPLAPLPPPPPPPARKGSYVSAFRPVVKDTESI 561
+ + P+ + P G PP AP PP PP+ KG + P K +
Sbjct: 1233 ATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLAT---PPHKGAPNP 1289
Query: 562 AKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVES 621
A + + + GPA P GA +P + S + +P A P
Sbjct: 1290 AVVTPPSPK---GGPATSPPKGA-----PTPPAATPPSPKGSPGTPPPKGAPTPPAVTPP 1341
Query: 622 NRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPPSATSSGADGPANSPDGGSPRPRRRLG- 680
+ P T PS+ P ++ PP+AT S GPA +P P P+R
Sbjct: 1342 S--PKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTP----PSPKRGPAI 1395
Query: 681 PPPAGRP 687
P P G P
Sbjct: 1396 PSPKGDP 1402
Score = 79.3 bits (194), Expect = 1e-14
Identities = 116/456 (25%), Positives = 149/456 (32%), Gaps = 88/456 (19%)
Query: 289 AAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPPL 348
A PP PP P+ GPA P G + P P P G P
Sbjct: 962 APTPPAATPPSPK---------GGPATPSPKGAPTPPAATP--PSPKGG---------PA 1001
Query: 349 FPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGA------GGPGASHL 402
P P G PT P + PKG P GA T A G P A+ L
Sbjct: 1002 TPSPKGAPT---------PPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPL 1052
Query: 403 PPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPVPSYPAA 462
P GA P P G + A A P+ P G P+ P+
Sbjct: 1053 PKGAPTTPAATL----PSPKGGPATPSLKGAPTPPAATPPS-----PKGG----PATPSP 1099
Query: 463 QSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGA--EERCPSALSRGPLDE 520
+ AA + A GAP P+ + GL + P+ + P
Sbjct: 1100 KGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSP 1159
Query: 521 DGTDEALPPPLAPLPPPPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGP 580
G PP AP P PP+ KG + P K GA
Sbjct: 1160 KGGLATPPPKGAPTTPAATPPSPKGGLAT---PSPK----------------GAPTTPAA 1200
Query: 581 GPGAGSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPS 640
P + GG +P +G+ + +A+P P+ + + P + A + PS
Sbjct: 1201 TPPSPKGGLATPS--PKGAPTTPAATP-----PSPKGGLAT---PSPKGAPTTPAATPPS 1250
Query: 641 AGGGPDGEQPTG---PPSAT-SSGADGPANSPDGGSPRPRRRLGPPPAGRPAFGDLAAED 696
GGP P G PP+AT S G A P G+P P P P G PA +
Sbjct: 1251 PKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATS--PPKG 1308
Query: 697 LVRRPERSPPSGGGGYELREPCGPLGGPAPAKVFAP 732
P +PPS G P G P P V P
Sbjct: 1309 APTPPAATPPSPKGSPGTPP---PKGAPTPPAVTPP 1341
Score = 61.2 bits (147), Expect = 4e-09
Identities = 136/561 (24%), Positives = 179/561 (31%), Gaps = 104/561 (18%)
Query: 277 PPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGP----AGPGGPGGGA------GVR 326
PPHK A P PP P+ GL P A P P GG G
Sbjct: 1120 PPHKG-------APTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAP 1172
Query: 327 SYPVIPVPSKGFGLLQKLP----------PP------LFPHPYGFPTAFGLCPKKDDPVL 370
+ P PS GL P PP P P G PT P L
Sbjct: 1173 TTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGL 1232
Query: 371 GAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPG--GGAMFWGHQ----PSGA 424
PKG P T + + GG A P P A P GG H+ P+
Sbjct: 1233 ATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVV 1292
Query: 425 AKDAAAVAAAAAAATVYPTFPMFWP-----AAGSLP---VPSYPAAQSQAKAVAAAVAAA 476
+ A + PT P P + G+ P P+ PA +
Sbjct: 1293 TPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSP--KGTPTLP 1350
Query: 477 AAAAAAAAGSGAPEPLDGAEP--AKESGLGAEERCPSALSRGPLDEDGTDEALPPPLAPL 534
A ++ G P +G P A S G P + RGP + P + PL
Sbjct: 1351 ATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPL 1410
Query: 535 PP---PPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVS 591
P P P R+G A P D A S ++A P A GG +
Sbjct: 1411 SPKKAPATPVTREG----AATPSKGDLTPPAVTPVSLKKA--------PATSAPKGGPAT 1458
Query: 592 PDFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQPT 651
P S+G + + +P + EP P + + P A P G PT
Sbjct: 1459 PS--SKGDPTLPAVTP--PSPKEP---------PAPKQVATSSSPKKAPATPAPMG-APT 1504
Query: 652 GPPSATSSGADGPANSPDGGSPRPRRRLGPPPA---GRPAFGDLAAEDLVRRPERSPPSG 708
P SS + PA +P RR P A + LA ++ + P + PS
Sbjct: 1505 LPAVIPSSPKEVPA------TPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAMTVPS- 1557
Query: 709 GGGYELREPCGPLGGPAPAKVFAPERDEHVKSAAVALGPAASYVCTPEAHEPDKEDNHSP 768
+ P P APA S+ A P A T + KE P
Sbjct: 1558 ----PKKTPAIPTPKEAPA----------TPSSKEASSPPAVTPSTYKGAPSPKELLIPP 1603
Query: 769 ADDLETRKSYPDQRSISQPSP 789
A + K P +++ PSP
Sbjct: 1604 AVTSPSPKEAPTPPAVTPPSP 1624
Score = 54.7 bits (130), Expect = 4e-07
Identities = 95/396 (23%), Positives = 126/396 (31%), Gaps = 78/396 (19%)
Query: 421 PSGAAKDAAAVAAAAAAATVYPT-----------FPMFWPAAGSLPVPSYPAAQSQAKAV 469
P GA +A + T+ P FP PA P P A S +
Sbjct: 861 PKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPAT---PAPKQAPALSMTSSS 917
Query: 470 ---AAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESG--LGAEERCPSALSRGPLDEDGTD 524
A A A A+ + GAP P P+ + G + + P+ + P G
Sbjct: 918 PKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGP 977
Query: 525 EALPPPLAPLPPPPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGA 584
P AP PP PP+ KG GPA GA
Sbjct: 978 ATPSPKGAPTPPAATPPSPKG-----------------------------GPATPSPKGA 1008
Query: 585 GSGGYVSPDFLSEGSSS-----YNSASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAP 639
+ V+P +GS + +++P T P+ + P + A + P
Sbjct: 1009 PTPPAVTPP-SPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLP--KGAPTTPAATLP 1065
Query: 640 SAGGGPDGEQ----PTGPPSATSSGADGPANSPDGGSPRPRRRLGPPPAGRPAFGDLAAE 695
S GGP PT P + S GPA G+P P P P G +
Sbjct: 1066 SPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKG--GLATPPHK 1123
Query: 696 DLVRRPERSPPSGGGGYELREPCGPLGGPAPAKVFAPERDEHVKSAAVALGPAASYVCTP 755
P +PPS GG L P P G P P +A P TP
Sbjct: 1124 GAPTTPAATPPSPKGG--LATP-PPKGAPTTPAATPPS-----PKGGLATPPPKGAPTTP 1175
Query: 756 EAHEPDKEDNHSPADDLET--RKSYPDQRSISQPSP 789
A P SP L T K P + + PSP
Sbjct: 1176 AATPP------SPKGGLATPSPKGAPTTPAATPPSP 1205
Score = 52.8 bits (125), Expect = 1e-06
Identities = 110/453 (24%), Positives = 144/453 (31%), Gaps = 70/453 (15%)
Query: 274 PGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLAT--GASGPA--GPGGPGGGAGVRSYP 329
P PP K A PP PP + GL GA PA P P GG
Sbjct: 1255 PATPPPKG-------APTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPK 1307
Query: 330 VIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPK--KDDPVLGAGEP--KGGPGTGSGG 385
P P K P P P G PT + P K P L A P KGGP T S
Sbjct: 1308 GAPTPPAATPPSPKGSPGT-PPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSK 1366
Query: 386 GG----AGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVY 441
G A T GGP + PP GP A+ + T
Sbjct: 1367 EGPTPPAATPSHKGGPAMT--PPSPKRGP-------------------AIPSPKGDPTSP 1405
Query: 442 PTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKES 501
P+ A + PV AA + +K A + A + AP+ PA S
Sbjct: 1406 AVIPLSPKKAPATPVTREGAA-TPSKGDLTPPAVTPVSLKKAPATSAPK----GGPATPS 1460
Query: 502 GLGAEERCPSALSRGPLDEDGTDEALPPPLAPLPPPPPPPARKGSYVSA-FRPVVKDTES 560
G D T A+ PP PP P A S A P +
Sbjct: 1461 SKG----------------DPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPT 1504
Query: 561 IAKLYGSAREAYGAGPARGPGPGAGSGGYVS---PDFLSEGSSSYNSASPDVDTADEPEV 617
+ + S+ + A P+ P A + +S P L+ + A P +
Sbjct: 1505 LPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAI 1564
Query: 618 DV--ESNRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPPSATSSGADGPANSPDGGSPRP 675
E+ P ++A + + G P ++ PP+ TS P P P
Sbjct: 1565 PTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPAVTPPSP 1624
Query: 676 RR-RLGPPPAGRPAFGDLAAEDLVRRPERSPPS 707
+ P P G P + L P SP S
Sbjct: 1625 EKGPATPAPKGTPTSPPVTPSSLKDSP-TSPAS 1656
Score = 40.0 bits (92), Expect = 0.010
Identities = 80/314 (25%), Positives = 107/314 (34%), Gaps = 53/314 (16%)
Query: 485 GSGAPEPLDGAEPAKESGLGAEERCPSALS-RGPLDEDGTDEALPPPL---APLPPPPPP 540
GS P+ G + S + A ++LS +G D T + PP AP P P
Sbjct: 813 GSAGPDTPIGNLSSPVSPVEASFLPENSLSFQGSKDSPATTHSPTPPSPKGAPTPSAVTP 872
Query: 541 PARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSS 600
+ KG + P T S+ L P GP +P +
Sbjct: 873 LSPKGVTLP---PKETPTPSVVNL---------PFPKEGPA---------TPAPKQAPAL 911
Query: 601 SYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQPTG---PPSAT 657
S S+SP A + ++ P + A + PS GGP P PP+AT
Sbjct: 912 SMTSSSPKKARATPAPKGIPAS--PSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAAT 969
Query: 658 S-SGADGPANSPDGGSPRPRRRLGPPPAGRPAFGDLAAEDLVRRPERSPPSGGGGYELRE 716
S GPA G+P P P P G PA + + P +PPS G
Sbjct: 970 PPSPKGGPATPSPKGAPTPPAATPPSPKGGPA--TPSPKGAPTPPAVTPPSPKG------ 1021
Query: 717 PCGPLGGPAPAKVFAPERDEHVKSAAVALGPAASYVCTPEAHEPDKEDNHSPADDLETRK 776
P P P P AA P S TP K +PA L + K
Sbjct: 1022 --SPAATPFPKGASTP-------PAATPPSPKGSPAATP----LPKGAPTTPAATLPSPK 1068
Query: 777 SYPDQRSI-SQPSP 789
P S+ P+P
Sbjct: 1069 GGPATPSLKGAPTP 1082
Score = 37.4 bits (85), Expect = 0.065
Identities = 68/292 (23%), Positives = 91/292 (31%), Gaps = 55/292 (18%)
Query: 288 EAAGPPGPPPPHPQRGLGLATGASGPAGP--------GGPGGGAGVRSYPVIPVPSKGFG 339
EA PP PP P++G P P P A V VP G
Sbjct: 1612 EAPTPPAVTPPSPEKGPATPAPKGTPTSPPVTPSSLKDSPTSPASVTCKMGATVPQASKG 1671
Query: 340 LLQKLPPPLFPH----PYGFPTAFGLCPKKDDPVL---GAGEPKGGPGTGSGGGGAG--- 389
L K P P T P + P A P P + G G
Sbjct: 1672 LPAKKGPTALKEVLVAPAPESTPIITAPTRKGPQTKKSSATSPPICPDPSAKNGSKGPLS 1731
Query: 390 -------------TGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAA 436
+ A G ASH P G A P A + AA + +A
Sbjct: 1732 TVAPAPLLPVQKDSSKTAKGKDASHSPKGPLAPPESKA---STPLTAAAFEKVLPKPESA 1788
Query: 437 AATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSG------APE 490
+ + P+ P+ P A S PVP+ P Q + V + + A A PE
Sbjct: 1789 SVSAAPSPPVSLPLAPS-PVPTLPPKQQFLPSSPGLVLESPSKPLAPADEDELLPLIPPE 1847
Query: 491 PLDGAEPAKE--------SGLGAEERCPSAL------SRGPLDEDGTDEALP 528
P+ G P + G PSA ++G E +DE++P
Sbjct: 1848 PISGGVPFQSVLVNMPTPKSAGIPVPTPSAKQPVTKNNKGSGTESDSDESVP 1899
Score = 33.9 bits (76), Expect = 0.72
Identities = 102/448 (22%), Positives = 140/448 (31%), Gaps = 85/448 (18%)
Query: 289 AAGPPGPP-PPHPQRGLGLATGASGPAGP---GGPGGGAGVRSYPVI----------PVP 334
A PP P PP P++ ++ PA P G P A + S P P+
Sbjct: 1469 AVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIA 1528
Query: 335 SKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAG----- 389
L +K P L P P A + K P + PK P T S +
Sbjct: 1529 PTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPT--PKEAPATPSSKEASSPPAVT 1586
Query: 390 --TGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMF 447
T GA P +PP + A P + A A PT P
Sbjct: 1587 PSTYKGAPSPKELLIPPAVTSPSPKEAP----TPPAVTPPSPEKGPATPAPKGTPTSP-- 1640
Query: 448 WPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLG-AE 506
P P++ + A+V A A G P G KE + A
Sbjct: 1641 ---------PVTPSSLKDSPTSPASVTCKMGATVPQASKGLPAK-KGPTALKEVLVAPAP 1690
Query: 507 ERCP---SALSRGPLDEDGTDEALPPPLAPLPPPPPPPARKGSY-------VSAFRPVVK 556
E P + +GP + + A PP+ P P A+ GS + PV K
Sbjct: 1691 ESTPIITAPTRKGPQTKKSS--ATSPPICP-----DPSAKNGSKGPLSTVAPAPLLPVQK 1743
Query: 557 DTESIAKLYGSAREAYGAGPARGPGPGAGSG--GYVSPDFLSEGSSSYNSASPDVDTA-- 612
D+ AK G GP P A + L + S+ SA+P +
Sbjct: 1744 DSSKTAK--GKDASHSPKGPLAPPESKASTPLTAAAFEKVLPKPESASVSAAPSPPVSLP 1801
Query: 613 -----------------DEPEVDVESNR---FPDDEDAQEETEPSAPSAGGGPDGEQPTG 652
P + +ES P DED P P +GG P
Sbjct: 1802 LAPSPVPTLPPKQQFLPSSPGLVLESPSKPLAPADEDELLPLIPPEPISGGVPFQSVLVN 1861
Query: 653 PPSATSSGADGPANSPDGGSPRPRRRLG 680
P+ S+G P +P P + G
Sbjct: 1862 MPTPKSAGI--PVPTPSAKQPVTKNNKG 1887
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 80.1 bits (196), Expect = 9e-15
Identities = 128/461 (27%), Positives = 152/461 (32%), Gaps = 82/461 (17%)
Query: 269 GAEMAPGPP--PHKSLRCGEDEAAGPPGPP-PPHPQRGLGLA-----------TGASGPA 314
G PGPP P G D GPPG PP P+ G A G +G
Sbjct: 30 GERGPPGPPGPPGVPGSDGIDGDNGPPGKAGPPGPKGEPGKAGPDGPDGKPGIDGLTGAK 89
Query: 315 GPGGPGGGAGVRSYPVIP----VPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVL 370
G GP G GV+ P +P +P GF PP P P G P G+ K DP
Sbjct: 90 GEPGPMGIPGVKGQPGLPGPPGLPGPGFA-----GPPGPPGPVGLPGEIGIRGPKGDP-- 142
Query: 371 GAGEPKGGPGTGSGGGGAGTGGGAGGPG----ASHLPPGAGAGPGGGAMFWGH------- 419
G P G PG G GT G G ++ PPG GP G GH
Sbjct: 143 GPDGPSGPPGPPGKPGRPGTIQGLEGSADFLCPTNCPPGM-KGPPGLQGVKGHAGKRGIL 201
Query: 420 -QPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAA 478
P K A+ P P G + YP
Sbjct: 202 GDPGHQGKPGPKGDVGASGEQGIPGPP------GPQGIRGYPGMAGPKGETGPHGYKGMV 255
Query: 479 AAAAAAGSGAPEPLDGAEPAKESGLGAEERCPSALSRGPLDEDGTDEAL-PPPLAPLPPP 537
A A G E G P +G +E P RGP G A PP +
Sbjct: 256 GAIGATGPPGEEGPRG--PPGRAGEKGDEGSPGI--RGPQGITGPKGATGPPGINGKDGT 311
Query: 538 PPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSE 597
P P KGS A +P + +A + G G G PGP G G+ P
Sbjct: 312 PGTPGMKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGPGDQGEPGP-QGLPGFSGP----- 365
Query: 598 GSSSYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEP---SAPSAGGGPDGEQPTGPP 654
P + P ++ + Q E P P GP GEQ GPP
Sbjct: 366 ---------PGKEGEPGPRGEIGPQGIMGQKGDQGERGPVGQPGPQGRQGPKGEQ--GPP 414
Query: 655 SATSSGADGPANSP----DGGSP---RPRRRLGPP-PAGRP 687
G GP P D GSP PR ++G P AG P
Sbjct: 415 -----GIPGPQGLPGVKGDKGSPGKTGPRGKVGDPGVAGLP 450
Score = 43.1 bits (100), Expect = 0.001
Identities = 97/371 (26%), Positives = 117/371 (31%), Gaps = 75/371 (20%)
Query: 269 GAEMAPGPP--PHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVR 326
G + PGP P S G++ GP G P G G GP G GP G G
Sbjct: 349 GDQGEPGPQGLPGFSGPPGKEGEPGPRGEIGPQGIMGQKGDQGERGPVGQPGPQGRQG-- 406
Query: 327 SYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGG 386
P +G PP P P G P G K G G PG G
Sbjct: 407 -----PKGEQG--------PPGIPGPQGLPGVKG--DKGSPGKTGPRGKVGDPGVAGLPG 451
Query: 387 GAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPM 446
G G +G PG P G G + G PSG A A YP P
Sbjct: 452 EKGEKGESGEPG-----PKGQQGVRGEPGYPG--PSG--------DAGAPGVQGYPGPPG 496
Query: 447 FWPAAGSLPVPSYPAAQS-------------------QAKAVAAAVAAAAAAAAAAAGSG 487
AG+ VP P Q Q + AV+A A A G
Sbjct: 497 PRGLAGNRGVPGQPGRQGVEGRDATDQHIVDVALKMLQEQLAEVAVSAKREALGAVGMMG 556
Query: 488 AP-EPLDGAEPAKESG------------LGAEERCPSALSRGPLDEDGTDEALPPPLAPL 534
P P P K+ +GA + + +G E G + +
Sbjct: 557 PPGPPGPPGYPGKQGPHGHPGPRGVPGIVGAVGQIGNTGPKGKRGEKGDPGEVGRGHPGM 616
Query: 535 PPPPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDF 594
P PP P G A KD + GS AG PGP G G+ P
Sbjct: 617 PGPPGIPGLPGRPGQAING--KDGDR-----GSPGAPGEAGRPGLPGP-VGLPGFCEP-A 667
Query: 595 LSEGSSSYNSA 605
G+S+Y SA
Sbjct: 668 ACLGASAYASA 678
Score = 42.7 bits (99), Expect = 0.002
Identities = 115/470 (24%), Positives = 141/470 (30%), Gaps = 99/470 (21%)
Query: 264 GGTRCGAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAG-------P 316
G T E P PP ++ G++ + G GP +G+ GA+GP G P
Sbjct: 259 GATGPPGEEGPRGPPGRAGEKGDEGSPGIRGP------QGITGPKGATGPPGINGKDGTP 312
Query: 317 GGPG--GGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGE 374
G PG G AG P G P GL AG
Sbjct: 313 GTPGMKGSAGQAGQP------------------------GSPGHQGL----------AGV 338
Query: 375 PKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAA 434
P G PGT G G G G G PG S PPG PG G D
Sbjct: 339 P-GQPGTKGGPGDQGEPGPQGLPGFSG-PPGKEGEPGPRGEIGPQGIMGQKGDQGERGPV 396
Query: 435 AAAATVYPTFPMFWPAAGSLPVP-SYPAAQ----SQAKAVAAAVAAAAAAAAAAAGSGAP 489
P +P P P + S K A G
Sbjct: 397 GQPGPQGRQGPKGEQGPPGIPGPQGLPGVKGDKGSPGKTGPRGKVGDPGVAGLPGEKGEK 456
Query: 490 EPLDGAEPAKESGLGAEERCPSALSRGPLDEDGTDEALPPPLAPLPPPPPP--------- 540
P + G+ E P GP + G P + P PP P
Sbjct: 457 GESGEPGPKGQQGVRGEPGYP-----GPSGDAGA-----PGVQGYPGPPGPRGLAGNRGV 506
Query: 541 ---PARKG-SYVSAFRPVVKDT------ESIAKLYGSA-REAYGAGPARGPGPGAGSGGY 589
P R+G A + D E +A++ SA REA GA GP G GY
Sbjct: 507 PGQPGRQGVEGRDATDQHIVDVALKMLQEQLAEVAVSAKREALGAVGMMGPPGPPGPPGY 566
Query: 590 VSPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDDEDAQE----ETEPSAPSAGGGP 645
+ P V N P + ++ E P G P
Sbjct: 567 PGK------QGPHGHPGPRGVPGIVGAVGQIGNTGPKGKRGEKGDPGEVGRGHPGMPGPP 620
Query: 646 DGEQPTGPPSATSSGADGPANSPDGGSPRPRRRLG-PPPAGRPAFGDLAA 694
G P +G DG SP G+P R G P P G P F + AA
Sbjct: 621 GIPGLPGRPGQAINGKDGDRGSP--GAPGEAGRPGLPGPVGLPGFCEPAA 668
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 79.3 bits (194), Expect = 1e-14
Identities = 127/490 (25%), Positives = 156/490 (31%), Gaps = 99/490 (20%)
Query: 272 MAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGG-PG--GGAGVRSY 328
+ P P ++ GE GPPGPP GL G G GP G PG G G+R +
Sbjct: 999 VGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGF 1058
Query: 329 PV---IPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGG 385
P +P P GL PP P P G P G GA P G PG
Sbjct: 1059 PGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPA--------GAAGPIGIPGRPGPQ 1110
Query: 386 GGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFP 445
G G G G PG GP G P+G V A V P P
Sbjct: 1111 GPPGPAGEKGAPGEK--------GPQG--------PAGRDGLQGPVGLPGPAGPVGP--P 1152
Query: 446 MFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAE-PAKESGLG 504
G + P ++ G P DG P + GL
Sbjct: 1153 GEDGDKGEIGEPGQKGSKGDKGEQGPP---GPTGPQGPIGQPGPSGADGEPGPRGQQGLF 1209
Query: 505 AEERCPSALSRGPLDEDGTDEALPPPLAPLPPPPPPPARKGSYVSAFRPVVKDTESIAKL 564
++ GP G PP L P PP KG +T + ++
Sbjct: 1210 GQKG-----DEGPRGFPG-----PPGPVGLQGLPGPPGEKG-----------ETGDVGQM 1248
Query: 565 YGSAREAYGAGPARGPG---PGAGSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVES 621
G GP+ PG P GG +P + E + P + P
Sbjct: 1249 -GPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGP------ 1301
Query: 622 NRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPPSATSSGADGPANSPDG----------G 671
P + + E S PS GP G P GPP G DGP SP G
Sbjct: 1302 ---PGPKGERGEKGESGPSGAAGPPG--PKGPP-----GDDGPKGSPGPVGFPGDPGPPG 1351
Query: 672 SPRPRRRLGPPPAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGPLGGPAPAKVFA 731
P P + GPP GD + + P+G G P GP G P
Sbjct: 1352 EPGPAGQDGPP-------GDKGDDGEPGQTGSPGPTGEPG-----PSGPPGKRGPPGPAG 1399
Query: 732 PERDEHVKSA 741
PE + K A
Sbjct: 1400 PEGRQGEKGA 1409
Score = 74.3 bits (181), Expect = 5e-13
Identities = 134/557 (24%), Positives = 170/557 (30%), Gaps = 86/557 (15%)
Query: 269 GAEMAPGPP-----PHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGA 323
G + PGPP P G A GPPG P + GL GA GP G G G
Sbjct: 712 GPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPP 771
Query: 324 GVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGS 383
G + P P G +P P G A G+ K G G PG
Sbjct: 772 GEKGGQGPPGPQGPIG---------YPGPRGVKGADGIRGLKG--TKGEKGEDGFPGFKG 820
Query: 384 GGGGAGTGGGAGGPG-----ASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAA 438
G G G G PG P G G GP G P G + +
Sbjct: 821 DMGIKGDRGEIGPPGPRGEDGPEGPKGRG-GPNGDP-----GPLGPPGEKGKLGVPG--- 871
Query: 439 TVYPTFPMFWPAAGSLPVPSYPAAQSQ---AKAVAAAVAAAAAAAAAAAGSGAPEPLDGA 495
P +P GS+ P +P A + G P + G
Sbjct: 872 --LPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITG- 928
Query: 496 EPAKESGLGAEERCPSALSRGPLDEDGTDEALPPPLAPLPPP-----PPPPARKGSYVSA 550
+P + G + RGP G P P P PP P P ++G
Sbjct: 929 KPGPKGNSGGDGPAGPPGERGPNGPQG-PTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQ 987
Query: 551 FRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVD 610
+ + G E G PGP G P + + + +
Sbjct: 988 GKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLP 1047
Query: 611 TADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPPS-ATSSGADGPANS-- 667
D P FP D P A G E P GPP A S G GPA +
Sbjct: 1048 GKDGPP---GLRGFPGDRGL-----PGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAG 1099
Query: 668 PDGGSPRPRRRLGPPPAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGPLGGPAPA 727
P G RP + P PAG P P G G + + GP+G P PA
Sbjct: 1100 PIGIPGRPGPQGPPGPAGEKG-----------APGEKGPQGPAGRDGLQ--GPVGLPGPA 1146
Query: 728 KVFAPERDEHVKSAAVALGPAASYVCTPEAHEPDKEDNHSPADDLETRKSYPDQRSISQP 787
P ++ K E EP ++ + + Q I QP
Sbjct: 1147 GPVGPPGEDGDKG---------------EIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQP 1191
Query: 788 SPANTD-----RGEDGL 799
P+ D RG+ GL
Sbjct: 1192 GPSGADGEPGPRGQQGL 1208
Score = 74.3 bits (181), Expect = 5e-13
Identities = 133/495 (26%), Positives = 157/495 (31%), Gaps = 61/495 (12%)
Query: 267 RCGAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVR 326
R G + PGP GE A G GP P + GL G GPAGP GP G G +
Sbjct: 1106 RPGPQGPPGP-------AGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDK 1158
Query: 327 SYPVIPVP--SKGFGLLQKLPPPLFPH-PYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGS 383
P SKG Q P P P P G P G G P+G G
Sbjct: 1159 GEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGAD--------GEPGPRGQQGLFG 1210
Query: 384 GGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPT 443
G G G G PG P G PG P G + V P
Sbjct: 1211 QKGDEGPRGFPGPPG----PVGLQGLPG---------PPGEKGETGDVGQMGPPGPPGPR 1257
Query: 444 FPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAK-ESG 502
P P A P P AV A G G P G K ESG
Sbjct: 1258 GPSGAPGADGPQGP--PGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESG 1315
Query: 503 LGAEERCPSALSRGPLDEDGTDEALPPPLAPLPPPPPPPARKGSYVSAFRPVVKDTESIA 562
P +GP +DG + P P+ P P PP G P K +
Sbjct: 1316 PSGAAGPPGP--KGPPGDDGP-KGSPGPVG-FPGDPGPPGEPGPAGQDGPPGDKGDDGEP 1371
Query: 563 KLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSAS---PDVDTADEPEVDV 619
GS GP+ PG G G P+ + A P T
Sbjct: 1372 GQTGSPGPTGEPGPSGPPGK-RGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGA 1430
Query: 620 ESNRFPDD-----EDAQEETEPSAPSAGGGPDGEQ-PTGPPSATS-SGADGPANSPDGGS 672
PD E+ P +P GPDG P GPP G GP + G
Sbjct: 1431 PGKPGPDGLRGIPGPVGEQGLPGSP----GPDGPPGPMGPPGLPGLKGDSGPKG--EKGH 1484
Query: 673 PRPRRRLGPPPAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGPLGGPAPAKVFAP 732
P +GPP G+ L S P G G + P GP+G P P + P
Sbjct: 1485 PGLIGLIGPPGEQ----GEKGDRGLPGPQGSSGPKGEQG--ITGPSGPIGPPGPPGLPGP 1538
Query: 733 ERDEHVKSAAVALGP 747
+ K ++ GP
Sbjct: 1539 PGPKGAKGSSGPTGP 1553
Score = 69.7 bits (169), Expect = 1e-11
Identities = 120/420 (28%), Positives = 132/420 (31%), Gaps = 84/420 (20%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSY 328
G + PGPP K G+ GPPGPP P RG A GA GP GP G G G
Sbjct: 1228 GLQGLPGPPGEKG-ETGDVGQMGPPGPPGP---RGPSGAPGADGPQGPPGGIGNPGAVGE 1283
Query: 329 PVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGE--PKGGPGTGSGGG 386
P + GL + P P P G G + P AG PKG PG G
Sbjct: 1284 KGEPGEAGEPGLPGEGGP---PGPKGERGEKG----ESGPSGAAGPPGPKGPPGDDGPKG 1336
Query: 387 GAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPM 446
G G G PG PPG GP G P G D + P
Sbjct: 1337 SPGPVGFPGDPG----PPGE-PGPAG-----QDGPPGDKGDDGEPGQTGSPGPTGEPGPS 1386
Query: 447 FWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAE 506
P P P+ P + K A A G P GA P K G
Sbjct: 1387 GPPGKRGPPGPAGPEGRQGEKG-----AKGEAGLEGPPGKTGPIGPQGA-PGKPGPDGLR 1440
Query: 507 ERCPSALSRGPLDEDGTDEALPPPLAPLPPPPP--PPARKGSYVSAFRPVVKDTESIAKL 564
GP+ E G LP P PP P PP G + K + L
Sbjct: 1441 G------IPGPVGEQG----LPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGL 1490
Query: 565 YGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVESNRF 624
G E G PGP SG
Sbjct: 1491 IGPPGEQGEKGDRGLPGPQGSSG------------------------------------- 1513
Query: 625 PDDEDAQEETEPSAPSAGGGPDG-EQPTGPPSAT-SSGADGPANSPDGGSPRPRRRLGPP 682
P E Q T PS P GP G P GP A SSG GP + G P P GPP
Sbjct: 1514 PKGE--QGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKG--EAGHPGPPGPPGPP 1569
Score = 64.7 bits (156), Expect = 4e-10
Identities = 116/478 (24%), Positives = 143/478 (29%), Gaps = 68/478 (14%)
Query: 285 GEDEAAGPPGP---PPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLL 341
G+ GPPGP P +G G G GP GP G G GV P P G +
Sbjct: 826 GDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSI 885
Query: 342 QKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASH 401
FP GFP GA KGG GT G G G GP
Sbjct: 886 G------FP---GFP--------------GANGEKGGRGTPGKPGPRGQRGPT-GPRGER 921
Query: 402 LPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPVPSYPA 461
P G PG G P+G + P P P L P +P
Sbjct: 922 GPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGL--PGHPG 979
Query: 462 AQSQAKAVAAAVAAAAAAAAAAAG-SGAPEPLDGAEPAKESGLGAEERCPSALSR----- 515
+ + G +G P+ G E+ P +
Sbjct: 980 QRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKG 1039
Query: 516 --GPLDEDGT-----------DEALPPPLAPL-------PPPPPPPA----RKGSYVSAF 551
GP G D LP P+ L PP PP PA +G +A
Sbjct: 1040 DPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAG 1099
Query: 552 RPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDT 611
+ G A E GA +GP AG G P L + D D
Sbjct: 1100 PIGIPGRPGPQGPPGPAGEK-GAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDK 1158
Query: 612 ADEPEVDVESNRFPDDEDAQE-ETEPSAPSAGGGPDGEQPTGPPSAT-----SSGADGPA 665
+ E + ++ E T P P GP G P G +GP
Sbjct: 1159 GEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPR 1218
Query: 666 NSPDGGSPRPRRRLGPPPAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGPLGG 723
P P + L PP + GD+ P PSG G + P GP GG
Sbjct: 1219 GFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGAD--GPQGPPGG 1274
Score = 57.8 bits (138), Expect = 5e-08
Identities = 94/348 (27%), Positives = 110/348 (31%), Gaps = 48/348 (13%)
Query: 264 GGTRCGAEMAPGPPPHKSLRCGEDEAAGPPGPPP--PHP----QRGLGLATGASGPAGPG 317
G T +M P PP G A GP GPP +P ++G G G G G
Sbjct: 1240 GETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEG 1299
Query: 318 GPGGGAGVRSYPVIPVPSKGFGLLQKLPPP------LFPHPYGFPTAFGLCPKKDDPVLG 371
GP G G R PS G PP P P GFP G P + G
Sbjct: 1300 GPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPG--PPGEPGPAG 1357
Query: 372 AGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAV 431
P G G G G+ G G PG S PPG PG P G + A
Sbjct: 1358 QDGPPGDKGDDGEPGQTGSPGPTGEPGPSG-PPGKRGPPGPAG------PEGRQGEKGAK 1410
Query: 432 AAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEP 491
A T P+ A P P + V + G P
Sbjct: 1411 GEAGLEGPPGKTGPIGPQGAPGKPGPD--GLRGIPGPVGEQGLPGSPGPDGPPGPMGPPG 1468
Query: 492 LDGAEPAKESGLGAEERCPSALSR-GPLDEDGT--DEALPPPLAPLPP------------ 536
L G + +SG E+ P + GP E G D LP P P
Sbjct: 1469 LPGLK--GDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGP 1526
Query: 537 --PPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGP 582
PP PP G P K + + G EA GP PGP
Sbjct: 1527 IGPPGPPGLPGP------PGPKGAKGSSGPTGPKGEAGHPGPPGPPGP 1568
Score = 55.5 bits (132), Expect = 2e-07
Identities = 109/440 (24%), Positives = 136/440 (30%), Gaps = 114/440 (25%)
Query: 315 GPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGE 374
G GGP G G + P I P G+L + PP P AG
Sbjct: 444 GIGGPRGEKGQKGEPAIIEP----GMLIEGPP--------------------GPEGPAGL 479
Query: 375 PKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAA 434
P G PGT G G G G PG LP G G M G DA +
Sbjct: 480 P-GPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKG-- 536
Query: 435 AAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAG-SGAPEPLD 493
P A +SQA+A+ A A G +G P P+
Sbjct: 537 ----------------------PMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVG 574
Query: 494 GAEPAKESGLGAEERCPSALSRGPLDEDGTDEALPPPLAPLPPPPPPPARKGSYVS-AFR 552
P GL E G + G P + P P P R+G S R
Sbjct: 575 ---PPGSGGLKGEP--------GDVGPQG-----PRGVQGPPGPAGKPGRRGRAGSDGAR 618
Query: 553 PVVKDT--------ESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNS 604
+ T + +A L G GP+ PGP G
Sbjct: 619 GMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDG----------------- 661
Query: 605 ASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDG-----EQPTGPPSATSS 659
+ D+ EV P + + P P GP G QP +
Sbjct: 662 -----ERGDDGEVGPRG--LPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQ 714
Query: 660 GADGP----ANSPDGGSPRPRRRLGPP----PAGRPAF-GDLAAEDLVRRP-ERSPPSGG 709
G GP N G P P+ +GPP P G+P G A+ P + PP
Sbjct: 715 GEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEK 774
Query: 710 GGYELREPCGPLGGPAPAKV 729
GG P GP+G P P V
Sbjct: 775 GGQGPPGPQGPIGYPGPRGV 794
Score = 52.4 bits (124), Expect = 2e-06
Identities = 124/508 (24%), Positives = 155/508 (30%), Gaps = 109/508 (21%)
Query: 275 GPPPHKSLRCGEDEAAGPPGPP---------------PPHPQRGLGLATGASGPAGP--- 316
GPP G + AG PGPP P + GL A G GP G
Sbjct: 469 GPP-------GPEGPAGLPGPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLM 521
Query: 317 ----GGPGGGAGVRSYPVIPVPSKGFGLLQKLPPPL-----------FPHPYGFPTAFGL 361
G GG AG + V S+ +LQ+ L P P G P + GL
Sbjct: 522 LPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGL 581
Query: 362 CPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMF----- 416
+ D +G P+G G G G G AG GA +P GP G F
Sbjct: 582 KGEPGD--VGPQGPRGVQGPPGPAGKPGRRGRAGSDGARGMP--GQTGPKGDRGFDGLAG 637
Query: 417 ----WGHQ----PSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKA 468
GH+ PSG V P P L P P
Sbjct: 638 LPGEKGHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPG 697
Query: 469 VAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEERCPSALS----RGPLDEDGTD 524
V G P P P E G ++ P A +G + G
Sbjct: 698 VTGM-------------DGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEK 744
Query: 525 EALPPPLAP-LPPPPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGP--ARGPG 581
L P P +P PP G G E G GP +GP
Sbjct: 745 GPLGKPGLPGMPGADGPPGHPGK------------------EGPPGEKGGQGPPGPQGPI 786
Query: 582 PGAGSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFP-DDEDAQEETEPSAPS 640
G G D + + D + ++ ++ +R + E P P
Sbjct: 787 GYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPK 846
Query: 641 AGGGPDGEQ-PTGPPSATSSGADGPANSPDGGSPRPRRRLGPPPA-GRPAFGDLAAEDLV 698
GGP+G+ P GPP G G P G P R GP + G P F E
Sbjct: 847 GRGGPNGDPGPLGPP-----GEKGKLGVP--GLPGYPGRQGPKGSIGFPGFPGANGE--- 896
Query: 699 RRPERSPPSGGGGYELREPCGPLGGPAP 726
+ R P G R P GP G P
Sbjct: 897 -KGGRGTPGKPGPRGQRGPTGPRGERGP 923
Score = 51.6 bits (122), Expect = 3e-06
Identities = 53/163 (32%), Positives = 64/163 (39%), Gaps = 38/163 (23%)
Query: 277 PPHKSLRCGEDEAAGPPGP------PPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPV 330
PP K+ G A G PGP P P ++GL + G GP GP GP G G++
Sbjct: 1418 PPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSG 1477
Query: 331 IPVPSKGF-GLLQKLPPPL---------FPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPG 380
P KG GL+ + PP P P G PK + + G P G PG
Sbjct: 1478 -PKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSG-----PKGEQGITGPSGPIGPPG 1531
Query: 381 T----------GSGGGGAGTG--GGAGGPGASHLPPGAGAGPG 411
G+ G TG G AG PG PPG PG
Sbjct: 1532 PPGLPGPPGPKGAKGSSGPTGPKGEAGHPG----PPGPPGPPG 1570
Score = 36.6 bits (83), Expect = 0.11
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 13/61 (21%)
Query: 274 PGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPV 333
PGPP G PGPP P +G TG G AG GP G G + P+
Sbjct: 1530 PGPP-------------GLPGPPGPKGAKGSSGPTGPKGEAGHPGPPGPPGPPGEVIQPL 1576
Query: 334 P 334
P
Sbjct: 1577 P 1577
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 77.8 bits (190), Expect = 4e-14
Identities = 157/659 (23%), Positives = 225/659 (34%), Gaps = 135/659 (20%)
Query: 257 DVKAMFNGGTR---CGAEMAPGPPPHKSLRCGEDEAAGPPGPPP----PHPQRG------ 303
D++ +GG + G + P PP S ED+A G P HP G
Sbjct: 95 DMEQPQHGGAKDSAAGGQADPPGPPLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALGTQQ 154
Query: 304 --LGLATGASGPAG--------------PGGPGGGAGVRSYPVIPVPSKGFGLLQKLPP- 346
+ + G GPA GGPGG AG S G G++
Sbjct: 155 PPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSASAA 214
Query: 347 ---------PLFPHPYGFPTA-FGLCPKKDDPVLGAGEPKGG-----PGTGSGGGGAGTG 391
PL G+P + P P G G GG G G GGGGAG G
Sbjct: 215 AAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAG 274
Query: 392 G-GAGGPGASHLPPGAGAGPGGGAMFWGHQ-------------------PSGAAKDAAAV 431
G GAG A+ A AG GGG + G P G + +
Sbjct: 275 GAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSK 334
Query: 432 AAAAAAATVYPTF----------------------PMFWPAAGSLPVPSYPAA----QSQ 465
AAA +AA + F PM GS P S P+A SQ
Sbjct: 335 AAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQ 394
Query: 466 AKAVAAAVAAAAAAAAAAAGSGAPEPLDGAE--PAKESGLGAEERCPSALSRG-PLDEDG 522
++ AAA AAA AAAG G + + GA+ A + A++R A+S G P G
Sbjct: 395 PQSQAAAAGAAAGGQQAAAGMGLGKDM-GAQYAAASPAWAAAQQRSHPAMSPGTPGPTMG 453
Query: 523 TDEALPPPLAPLPPPPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYG-AGPAR--- 578
+ P+ P+ P GS P + +S GS YG GP R
Sbjct: 454 RSQG--SPMDPMVMKRPQLYGMGS-----NPHSQPQQSSPYPGGS----YGPPGPQRYPI 502
Query: 579 ---GPGPGAGSG-----GYVSPDFLSEGSSSYNSASPDVDTADEPE---VDVESNRFPDD 627
G PGA +G + P + +G S Y + +P+ + ++ P
Sbjct: 503 GIQGRTPGAMAGMQYPQQQMPPQYGQQGVSGYCQQGQQPYYSQQPQPPHLPPQAQYLPSQ 562
Query: 628 EDAQEETEPSAPSAGGGPDGEQPTGPPSATSSG-----ADGPANSPD-GGS--PRPRRRL 679
+ + + G G + P P + P++ PD GS P
Sbjct: 563 SQQRYQPQQDMSQEGYGTRSQPPLAPGKPNHEDLNLIQQERPSSLPDLSGSIDDLPTGTE 622
Query: 680 GPPPAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGPLGGPAPAKVFAPERDEHVK 739
+ A G +++ P +SP S L GGP+P+ V +P +
Sbjct: 623 ATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHL---SSIPGGPSPSPVGSPVGSNQSR 679
Query: 740 SAAVALGPAASYVCTPEAHEPDKEDNHSPADDLETRKSYPDQRSISQPSPANTDRGEDG 798
S ++ P+ E + PA ++ P +R + N + G
Sbjct: 680 SGPISPASIPGSQMPPQPPGSQSESSSHPA---LSQSPMPQERGFMAGTQRNPQMAQYG 735
Score = 63.2 bits (152), Expect = 1e-09
Identities = 137/568 (24%), Positives = 185/568 (32%), Gaps = 142/568 (25%)
Query: 285 GEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGP----GGGAGVRSYPVIPVPS----- 335
G A PGP PQ G + A G A P GP G + P + P+
Sbjct: 84 GAGGGAPQPGPDMEQPQHGGAKDSAAGGQADPPGPPLLSKPGDEDDAPPKMGEPAGGRYE 143
Query: 336 -KGFGLL-QKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSG------GGG 387
G G L + PP P G P A P+ ++ A GGPG +G GG
Sbjct: 144 HPGLGALGTQQPPVAVPGGGGGPAA---VPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQ 200
Query: 388 AGTGGG---------AGGPGA----------------SHLP----PGAGAGPGGGAMFWG 418
G G AG PG+ +H P PGAG G GGG G
Sbjct: 201 QSPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGG 260
Query: 419 HQPSG-----------AAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAK 467
G A AA AAAAAAA + ++ V S P Q
Sbjct: 261 GSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGM 320
Query: 468 AVAAAVAAAAAAAAAAAGS---------GAPEPLDGAEPAKESGLGAEERCPSALSRGPL 518
+ AA+ + AAAGS G + GA P L + PS + R
Sbjct: 321 MMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTS----PSPMMR--- 373
Query: 519 DEDGTDEALPPPLAPLPPPPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPAR 578
G+ P AP PPP P + +A AG A
Sbjct: 374 SYGGSYPEYSSPSAPPPPPSQPQS---------------------------QAAAAGAAA 406
Query: 579 GPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEPSA 638
G G A +G + D + Y +ASP A + S P P+
Sbjct: 407 G-GQQAAAGMGLGKDM----GAQYAAASPAWAAAQQRSHPAMSPGTPG---------PTM 452
Query: 639 PSAGGGPDGEQPTGPPSATSSGADGPANSPDGGSPRPRRRLGPPPAGRPAFGDLAAEDLV 698
+ G P P G++ P + P SP P GPP
Sbjct: 453 GRSQGSPMDPMVMKRPQLYGMGSN-PHSQPQQSSPYPGGSYGPP---------------- 495
Query: 699 RRPERSPPSGGGGYELREPCGPLGGPAPAKVFAPERDEHVKSAAVALGPAASYVCTPEAH 758
P+R P G + R P G P + P+ + S G Y P+
Sbjct: 496 -GPQRYPI----GIQGRTPGAMAGMQYPQQQMPPQYGQQGVSGYCQQGQQPYYSQQPQPP 550
Query: 759 EPDKEDNHSPADDLETRKSYPDQRSISQ 786
+ + P+ ++++ Y Q+ +SQ
Sbjct: 551 HLPPQAQYLPS---QSQQRYQPQQDMSQ 575
Score = 33.9 bits (76), Expect = 0.72
Identities = 76/340 (22%), Positives = 108/340 (31%), Gaps = 93/340 (27%)
Query: 293 PGPPPPHPQRG-LGLATGASGPAGPGG----------PGGGAGVRSYPVI---PVPS-KG 337
PG P P P +G SGP P PG + S+P + P+P +G
Sbjct: 661 PGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQERG 720
Query: 338 FGL------------LQKLPPPLFPHPY-GFPTAFGLCPKKDDPVLGAGEPKGGPGTGSG 384
F Q+ P + PHP G G+ + G P+ G
Sbjct: 721 FMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQSNSSGTYGPQMSQ-YGPQ 779
Query: 385 GGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGH---QPSGAAKDAAAVAAAAA----- 436
G + +G P AS+ PG G G G QP GA +A
Sbjct: 780 GNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRMPSAGMQNRPFP 839
Query: 437 --AATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAA------------ 482
+++ P+ P G P P +A+ AAAV AAA +A
Sbjct: 840 GNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRQGSFPGMNQS 899
Query: 483 ---AAGSGAPEPLDGAE-------------PAKESGLGAEERCPSALSRG------PLDE 520
A+ S +P++ + PA + A +S G PL
Sbjct: 900 GLMASSSPYSQPMNNSSSLMNTQAPPYSMAPAMVNSSAASVGLADMMSPGESKLPLPLKA 959
Query: 521 DGTDEALPPPLA--------------------PLPPPPPP 540
DG +E P P + P+P P P
Sbjct: 960 DGKEEGTPQPESKSKDSYSSQGISQPPTPGNLPVPSPMSP 999
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 77.8 bits (190), Expect = 4e-14
Identities = 157/659 (23%), Positives = 225/659 (34%), Gaps = 135/659 (20%)
Query: 257 DVKAMFNGGTR---CGAEMAPGPPPHKSLRCGEDEAAGPPGPPP----PHPQRG------ 303
D++ +GG + G + P PP S ED+A G P HP G
Sbjct: 95 DMEQPQHGGAKDSAAGGQADPPGPPLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALGTQQ 154
Query: 304 --LGLATGASGPAG--------------PGGPGGGAGVRSYPVIPVPSKGFGLLQKLPP- 346
+ + G GPA GGPGG AG S G G++
Sbjct: 155 PPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSASAA 214
Query: 347 ---------PLFPHPYGFPTA-FGLCPKKDDPVLGAGEPKGG-----PGTGSGGGGAGTG 391
PL G+P + P P G G GG G G GGGGAG G
Sbjct: 215 AAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAG 274
Query: 392 G-GAGGPGASHLPPGAGAGPGGGAMFWGHQ-------------------PSGAAKDAAAV 431
G GAG A+ A AG GGG + G P G + +
Sbjct: 275 GAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSK 334
Query: 432 AAAAAAATVYPTF----------------------PMFWPAAGSLPVPSYPAA----QSQ 465
AAA +AA + F PM GS P S P+A SQ
Sbjct: 335 AAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQ 394
Query: 466 AKAVAAAVAAAAAAAAAAAGSGAPEPLDGAE--PAKESGLGAEERCPSALSRG-PLDEDG 522
++ AAA AAA AAAG G + + GA+ A + A++R A+S G P G
Sbjct: 395 PQSQAAAAGAAAGGQQAAAGMGLGKDM-GAQYAAASPAWAAAQQRSHPAMSPGTPGPTMG 453
Query: 523 TDEALPPPLAPLPPPPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYG-AGPAR--- 578
+ P+ P+ P GS P + +S GS YG GP R
Sbjct: 454 RSQG--SPMDPMVMKRPQLYGMGS-----NPHSQPQQSSPYPGGS----YGPPGPQRYPI 502
Query: 579 ---GPGPGAGSG-----GYVSPDFLSEGSSSYNSASPDVDTADEPE---VDVESNRFPDD 627
G PGA +G + P + +G S Y + +P+ + ++ P
Sbjct: 503 GIQGRTPGAMAGMQYPQQQMPPQYGQQGVSGYCQQGQQPYYSQQPQPPHLPPQAQYLPSQ 562
Query: 628 EDAQEETEPSAPSAGGGPDGEQPTGPPSATSSG-----ADGPANSPD-GGS--PRPRRRL 679
+ + + G G + P P + P++ PD GS P
Sbjct: 563 SQQRYQPQQDMSQEGYGTRSQPPLAPGKPNHEDLNLIQQERPSSLPDLSGSIDDLPTGTE 622
Query: 680 GPPPAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGPLGGPAPAKVFAPERDEHVK 739
+ A G +++ P +SP S L GGP+P+ V +P +
Sbjct: 623 ATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHL---SSIPGGPSPSPVGSPVGSNQSR 679
Query: 740 SAAVALGPAASYVCTPEAHEPDKEDNHSPADDLETRKSYPDQRSISQPSPANTDRGEDG 798
S ++ P+ E + PA ++ P +R + N + G
Sbjct: 680 SGPISPASIPGSQMPPQPPGSQSESSSHPA---LSQSPMPQERGFMAGTQRNPQMAQYG 735
Score = 63.2 bits (152), Expect = 1e-09
Identities = 137/568 (24%), Positives = 185/568 (32%), Gaps = 142/568 (25%)
Query: 285 GEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGP----GGGAGVRSYPVIPVPS----- 335
G A PGP PQ G + A G A P GP G + P + P+
Sbjct: 84 GAGGGAPQPGPDMEQPQHGGAKDSAAGGQADPPGPPLLSKPGDEDDAPPKMGEPAGGRYE 143
Query: 336 -KGFGLL-QKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSG------GGG 387
G G L + PP P G P A P+ ++ A GGPG +G GG
Sbjct: 144 HPGLGALGTQQPPVAVPGGGGGPAA---VPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQ 200
Query: 388 AGTGGG---------AGGPGA----------------SHLP----PGAGAGPGGGAMFWG 418
G G AG PG+ +H P PGAG G GGG G
Sbjct: 201 QSPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGG 260
Query: 419 HQPSG-----------AAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAK 467
G A AA AAAAAAA + ++ V S P Q
Sbjct: 261 GSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGM 320
Query: 468 AVAAAVAAAAAAAAAAAGS---------GAPEPLDGAEPAKESGLGAEERCPSALSRGPL 518
+ AA+ + AAAGS G + GA P L + PS + R
Sbjct: 321 MMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTS----PSPMMR--- 373
Query: 519 DEDGTDEALPPPLAPLPPPPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPAR 578
G+ P AP PPP P + +A AG A
Sbjct: 374 SYGGSYPEYSSPSAPPPPPSQPQS---------------------------QAAAAGAAA 406
Query: 579 GPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEPSA 638
G G A +G + D + Y +ASP A + S P P+
Sbjct: 407 G-GQQAAAGMGLGKDM----GAQYAAASPAWAAAQQRSHPAMSPGTPG---------PTM 452
Query: 639 PSAGGGPDGEQPTGPPSATSSGADGPANSPDGGSPRPRRRLGPPPAGRPAFGDLAAEDLV 698
+ G P P G++ P + P SP P GPP
Sbjct: 453 GRSQGSPMDPMVMKRPQLYGMGSN-PHSQPQQSSPYPGGSYGPP---------------- 495
Query: 699 RRPERSPPSGGGGYELREPCGPLGGPAPAKVFAPERDEHVKSAAVALGPAASYVCTPEAH 758
P+R P G + R P G P + P+ + S G Y P+
Sbjct: 496 -GPQRYPI----GIQGRTPGAMAGMQYPQQQMPPQYGQQGVSGYCQQGQQPYYSQQPQPP 550
Query: 759 EPDKEDNHSPADDLETRKSYPDQRSISQ 786
+ + P+ ++++ Y Q+ +SQ
Sbjct: 551 HLPPQAQYLPS---QSQQRYQPQQDMSQ 575
Score = 41.2 bits (95), Expect = 0.004
Identities = 110/530 (20%), Positives = 171/530 (32%), Gaps = 122/530 (23%)
Query: 293 PGPPPPHPQRG-LGLATGASGPAGPGG----------PGGGAGVRSYPVI---PVPS-KG 337
PG P P P +G SGP P PG + S+P + P+P +G
Sbjct: 661 PGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQERG 720
Query: 338 FGL------------LQKLPPPLFPHPY-GFPTAFGLCPKKDDPVLGAGEPKGGPGTGSG 384
F Q+ P + PHP G G+ + G P+ G
Sbjct: 721 FMAGTQRNPQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQSNSSGTYGPQMSQ-YGPQ 779
Query: 385 GGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGH---QPSGAAKDAAAVAAAAA----- 436
G + +G P AS+ PG G G G QP GA +A
Sbjct: 780 GNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRMPSAGMQNRPFP 839
Query: 437 --AATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAA------------- 481
+++ P+ P G P P +A+ AAAV AAA +A
Sbjct: 840 GNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRQGSFPGMNQS 899
Query: 482 --AAAGSGAPEPLDGAE-------------PAKESGLGAEERCPSALSRG------PLDE 520
A+ S +P++ + PA + A +S G PL
Sbjct: 900 GLMASSSPYSQPMNNSSSLMNTQAPPYSMAPAMVNSSAASVGLADMMSPGESKLPLPLKA 959
Query: 521 DGTDEALPPP----------------LAPLPPPPPPPARK-------------GSYVSAF 551
DG +E P P + + P RK GS VS+
Sbjct: 960 DGKEEGTPQPESKSKKSSSSTTTGEKITKVYELGNEPERKLWVDRYLTFMEERGSPVSSL 1019
Query: 552 RPVVKDTESIAKLYGSAREAYGAGPAR--------GPGPGAGSGGYVSPDFLSEGSSSYN 603
V K + +LY +E G G+ + +
Sbjct: 1020 PAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLF 1079
Query: 604 SASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPPSATSSGADG 663
+ ++ +EP +V S D Q + +P +P+ G G Q T + ++S A+
Sbjct: 1080 AFECKIERGEEPPPEVFST---GDTKKQPKLQPPSPANSGSLQGPQ-TPQSTGSNSMAEV 1135
Query: 664 PAN-SPDGGSPRPRRRLGPPPAGRPA-------FGDLAAEDLVRRPERSP 705
P + P + P ++ P GR + F D++ +R +P
Sbjct: 1136 PGDLKPPTPASTPHGQMTPMQGGRSSTISVHDPFSDVSDSSFPKRNSMTP 1185
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 76.6 bits (187), Expect = 1e-13
Identities = 109/389 (28%), Positives = 133/389 (34%), Gaps = 65/389 (16%)
Query: 290 AGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIP----VPSKGFGLLQKLP 345
AG G P P G A PAG PGGG R P P VP+ KL
Sbjct: 68 AGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLR 127
Query: 346 PPLFPHPYG-------FPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAG-GP 397
PP P G P A + + G +P GP + G G G G G GP
Sbjct: 128 PP----PEGSAGSCAPVPAAAAVAAGPEPAPAGPAKP-AGPAALAARAGPGPGPGPGPGP 182
Query: 398 GASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPVP 457
G PG AGPG G + AAA A + P+ PAA +
Sbjct: 183 GPG---PGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQ 239
Query: 458 SYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEERCPSALSRGP 517
+ P + A AA + AA A AA + P P PA P+ L+R P
Sbjct: 240 TPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPP----PPA-----------PATLARPP 284
Query: 518 LDEDGTDEALPPPLAPLPPPPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYG-AGP 576
G PP AP PPP GS +A P A A G AG
Sbjct: 285 GHPAG-----PPTAAPAVPPPAAAQNGGSAGAAPAP--------------APAAGGPAGV 325
Query: 577 ARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEP 636
+ PGPGA + +P +E A+P P + P A P
Sbjct: 326 SGQPGPGAAAAA-PAPGVKAESPKRVVQAAP-------PAAQTLAASGPASTAASMVIGP 377
Query: 637 SAPSAGGGPDGEQPTGP--PSATSSGADG 663
+ A P P P P+ GA G
Sbjct: 378 TMQGALPSPAAVPPPAPGTPTGLPKGAAG 406
Score = 65.5 bits (158), Expect = 2e-10
Identities = 92/314 (29%), Positives = 111/314 (35%), Gaps = 51/314 (16%)
Query: 469 VAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKES--GLGAEERCPSALSRGPLDEDGTDEA 526
V+ + A AA A AA GAP PA + G G +R R PL G
Sbjct: 63 VSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGP--- 119
Query: 527 LPPPLAPLPPPPPPPARKGSYVSAFRPVVKDTESI----AKLYG----SAREAYGAGPAR 578
PP A L PPP A + V A V E AK G +AR G GP
Sbjct: 120 -APPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGP 178
Query: 579 GPGPGAGSGGYVSPDFLS--EGSS----SYNSASPDVDTAD----------EPEVDVESN 622
GPGPG G G P GS+ S+++A+P V + +P
Sbjct: 179 GPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVI 238
Query: 623 RFPDDEDAQEETEPSAPSAGGGPDGEQPTG---PPSATSSGADGPANSPDGGSPRPRRRL 679
+ P A P+APS P P PP + P P G P
Sbjct: 239 QTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAG--PPTAAPA 296
Query: 680 GPPPAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGPLGGPAP-AKVFAPE---RD 735
PPPA G A P +P +GG P G G P P A AP +
Sbjct: 297 VPPPAAAQNGGSAGA-----APAPAPAAGG-------PAGVSGQPGPGAAAAAPAPGVKA 344
Query: 736 EHVKSAAVALGPAA 749
E K A PAA
Sbjct: 345 ESPKRVVQAAPPAA 358
Score = 64.3 bits (155), Expect = 5e-10
Identities = 84/286 (29%), Positives = 106/286 (37%), Gaps = 41/286 (14%)
Query: 469 VAAAVAAA------AAAAAAAAGSGAPEPLDGAEPA---------KESGLGAEERCPSAL 513
V AA A A + + A AAG+G P +GA A G G +R
Sbjct: 50 VRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPS 109
Query: 514 SRGPLDEDGTDEALPPPLAPLPPPPPPPARKGSYVSAFRPVVKDTESI----AKLYG--- 566
R PL G PP A L PPP A + V A V E AK G
Sbjct: 110 PRRPLVPAGP----APPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAA 165
Query: 567 -SAREAYGAGPARGPGPGAGSGGYVSPDFLS--EGS----SSYNSASPDVDTADEPEVDV 619
+AR G GP GPGPG G G P GS +S+++A+P V + +
Sbjct: 166 LAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAAL 225
Query: 620 ESNRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPPSATSSGADGPANSPDGGSPRPRRRL 679
P +T P +A P PP+A + A PA +P P P
Sbjct: 226 LPLPKPAAPGTVIQTPPFVGAA--APPAPAAPSPPAAPAPAA--PAAAPPPPPPAPATLA 281
Query: 680 GPPPAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREPCGPLGGPA 725
PP G PA AA + P + +GG P GGPA
Sbjct: 282 RPP--GHPAGPPTAAPAV--PPPAAAQNGGSAGAAPAPAPAAGGPA 323
Score = 63.2 bits (152), Expect = 1e-09
Identities = 104/371 (28%), Positives = 129/371 (34%), Gaps = 84/371 (22%)
Query: 370 LGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAG-AGPGGGAMFWGHQPSGAAKDA 428
LG G P +G G A GA PGA+ PP AG A PGGG G Q G
Sbjct: 58 LGNHVVSGSPAGAAGAGPAAPAEGA--PGAAPEPPPAGRARPGGG----GPQRPGPPSPR 111
Query: 429 AAVAAAAAAATVYPTFPMFWPAAGS-LPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSG 487
+ A A P +AGS PVP+ A + + A A A AA AA +G
Sbjct: 112 RPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAG 171
Query: 488 -----APEPLDGAEPAKESGLGAEER----------------CPSALSRGPL-------- 518
P P G P K +G GA + S ++ GP
Sbjct: 172 PGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKP 231
Query: 519 DEDGTDEALP---------------PPLAPLP------PPPPPPARKGSYVSAFRPVVKD 557
GT P PP AP P PPPPPPA P
Sbjct: 232 AAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPP 291
Query: 558 TESIAKLYGSAREAYG-AGPARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTADEPE 616
T + A +A + G AG A P P AG VS G +A+ A P
Sbjct: 292 TAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVS------GQPGPGAAA----AAPAPG 341
Query: 617 VDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPPSATSSGADGPANSPDGGSPRPR 676
V ES + + P+A + +GP S +S GP + G P P
Sbjct: 342 VKAES-----PKRVVQAAPPAAQTLAA-------SGPASTAASMVIGP--TMQGALPSP- 386
Query: 677 RRLGPPPAGRP 687
+ PP G P
Sbjct: 387 AAVPPPAPGTP 397
Score = 58.9 bits (141), Expect = 2e-08
Identities = 86/290 (29%), Positives = 106/290 (36%), Gaps = 54/290 (18%)
Query: 270 AEMAPGPPPHKSLRCGEDEAAGPPG-----PPPPHPQRGLGLATGASGPAGPGGP----G 320
A +A GP P + G + AGP P P P G G G PAGPG G
Sbjct: 144 AAVAAGPEPAPA---GPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNG 200
Query: 321 GGAGVRSY----PVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPK 376
A + S+ P + + + G L LP P P + P +GA P
Sbjct: 201 SAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTV----------IQTPPFVGAAAPP 250
Query: 377 GGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAA 436
P S A P P A P G P+G A AV AA
Sbjct: 251 -APAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPG-------HPAGPPTAAPAVPPPAA 302
Query: 437 AATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEP---LD 493
A +AG+ P P+ PAA A V+ AAAAA A G A P +
Sbjct: 303 AQN--------GGSAGAAPAPA-PAAGGPA-GVSGQPGPGAAAAAPAPGVKAESPKRVVQ 352
Query: 494 GAEPAKESGLGAEERCPSALSR--GPLDEDGTDEALPPPLAPLPPPPPPP 541
A PA ++ L A +A S GP + ALP P A PP P P
Sbjct: 353 AAPPAAQT-LAASGPASTAASMVIGPTMQG----ALPSPAAVPPPAPGTP 397
Score = 50.4 bits (119), Expect = 7e-06
Identities = 57/212 (26%), Positives = 73/212 (34%), Gaps = 25/212 (11%)
Query: 289 AAGPPGPPPPHPQRGLGLAT----GASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKL 344
AA P P P P G + T GA+ P P P S P P P+
Sbjct: 223 AALLPLPKPAAP--GTVIQTPPFVGAAAPPAPAAP-------SPPAAPAPAAPAAAPP-- 271
Query: 345 PPPLFP--------HPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAGG 396
PPP P HP G PTA P G G P GG G G
Sbjct: 272 PPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNG-GSAGAAPAPAPAAGGPAGVSGQPG 330
Query: 397 PGASHLPPGAGA-GPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLP 455
PGA+ P G + P+ A+ A+ AA+ + PT P+ ++P
Sbjct: 331 PGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVP 390
Query: 456 VPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSG 487
P+ K A AV + + A SG
Sbjct: 391 PPAPGTPTGLPKGAAGAVTQSLSRTPTATTSG 422
Score = 35.4 bits (80), Expect = 0.25
Identities = 36/125 (28%), Positives = 41/125 (32%), Gaps = 25/125 (20%)
Query: 630 AQEETEPSAPSAGGGPDGEQPTGPPSATSSGADGPANSPDGGSPRPRRRLGPPPAGRPAF 689
A E A +AG + P A +G PA G +P PPPAGR
Sbjct: 44 APRTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPE------PPPAGR--- 94
Query: 690 GDLAAEDLVRRPERSPPSGGGGYELREPCGPLGGPAPAKVFAPERDEHVKS-------AA 742
RP P G R P P G PA P + S AA
Sbjct: 95 ---------ARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAA 145
Query: 743 VALGP 747
VA GP
Sbjct: 146 VAAGP 150
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 73.9 bits (180), Expect = 6e-13
Identities = 113/426 (26%), Positives = 134/426 (31%), Gaps = 73/426 (17%)
Query: 271 EMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPV 330
E P PP G AG G P P Q+G+ G G G GP G G++ P
Sbjct: 1157 ENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPG 1216
Query: 331 IPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGT 390
P G + + PP P P G P+ + G P G G+ G G G
Sbjct: 1217 PPGEKGENGDVGPMGPPGPPGPRG--------PQGPNGADGPQGPPGSVGSVGGVGEKGE 1268
Query: 391 GGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPA 450
G AG PG PPG AG GG P G + AA P
Sbjct: 1269 PGEAGNPG----PPGE-AGVGG--------PKGERGEKGEAGPPGAAGP---------PG 1306
Query: 451 AGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEERCP 510
A P P G P P PA + G+G ++
Sbjct: 1307 AKGPPGDDGPKGNP----------------GPVGFPGDPGPPGEPGPAGQDGVGGDK--- 1347
Query: 511 SALSRGPLDEDGTDEALPPPLAPLPP--PPPPPARKGSYVSAFRPVVKDTESIAKLYGSA 568
EDG D P P P PP PP ++G P E G+
Sbjct: 1348 --------GEDG-DPGQPGPPGPSGEAGPPGPPGKRGP------PGAAGAEGRQGEKGAK 1392
Query: 569 REAYGAGPARGPGPGA--GSGGYVSPDFLSEGSSSYNSAS-PDVDTADEPEVDVESNRFP 625
EA GP GP G G P+ L P D P + P
Sbjct: 1393 GEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLP 1452
Query: 626 DDE-DAQEETEPSAPSAGG--GPDGEQPTGPPSATSSGADGPANSPDGGSPRPRRRLGPP 682
+ D + E P G GP GEQ P DGG P P LGPP
Sbjct: 1453 GLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPP 1512
Query: 683 -PAGRP 687
P G P
Sbjct: 1513 GPPGLP 1518
Score = 69.7 bits (169), Expect = 1e-11
Identities = 150/549 (27%), Positives = 171/549 (31%), Gaps = 109/549 (19%)
Query: 285 GEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKL 344
GE A G G P P QRG G+ G GP G G G P P G
Sbjct: 877 GEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQ 936
Query: 345 PPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPP 404
P FP P G P P KD G PG G G G G PG P
Sbjct: 937 GPVGFPGPKGPPGP----PGKD----------GLPGHPGQRGETGFQGKTGPPG-----P 977
Query: 405 GAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWP-AAGSLPVPSYPAAQ 463
G GP G P+G + + P P AAG P Q
Sbjct: 978 GGVVGPQG--------PTG---ETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQ 1026
Query: 464 S-QAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESG-LGAEERCPSALSRGPLDED 521
K A + GAP G P G +G+ SA + GP+
Sbjct: 1027 GISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPI--- 1083
Query: 522 GTDEALPPPLAPLPPPPP-----PPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGP 576
LP P PP P P KG A R V+ G AGP
Sbjct: 1084 ----GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ---------GPVGLPGPAGP 1130
Query: 577 ARGPGPGAGSGGYVSPDFL-SEGSSSYNS-----------ASPDVDTAD-EPEVDVESNR 623
A PG G P S+G N +P + D EP +
Sbjct: 1131 AGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGM 1190
Query: 624 FPDDEDAQEETEPSAPSAGGGPDGEQP-TGPPSATSSGAD-GPANSPDGGSPRPRRRLGP 681
F D P P GP G Q GPP D GP P G P PR GP
Sbjct: 1191 FGQKGDEGARGFPGPP----GPIGLQGLPGPPGEKGENGDVGPMGPP--GPPGPRGPQGP 1244
Query: 682 PPAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREP--CGPLGGPAPAKVFAPERDEHVK 739
A P + P S S GG E EP G G P A V P+ + K
Sbjct: 1245 NGADGP-----------QGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEK 1293
Query: 740 SAAVALGPAASYVCTPEAHEPDKED----NHSPADDLETRKSYP-DQRSISQPSPANT-- 792
A G A P A P +D N P +P D +P PA
Sbjct: 1294 GEAGPPGAAG----PPGAKGPPGDDGPKGNPGPV-------GFPGDPGPPGEPGPAGQDG 1342
Query: 793 ---DRGEDG 798
D+GEDG
Sbjct: 1343 VGGDKGEDG 1351
Score = 68.6 bits (166), Expect = 3e-11
Identities = 133/535 (24%), Positives = 168/535 (31%), Gaps = 94/535 (17%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSY 328
GA G P K G+ GPPGPP +G G GP GP GP G G+ +
Sbjct: 904 GARGPTGKPGPKGTSGGD----GPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGH 959
Query: 329 P------------------VIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVL 370
P + P G + P P G P GL
Sbjct: 960 PGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGL-----PGAA 1014
Query: 371 GAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAA 430
G KG PG G G G G PG L PGA PG + G P G +
Sbjct: 1015 GKEGAKGDPGPQGISGKDGPAGLRGFPGERGL-PGAQGAPG---LKGGEGPQGPPGPVGS 1070
Query: 431 VAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAG-SGAP 489
+A T AG + +P P Q A AG G
Sbjct: 1071 PGERGSAGT-----------AGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ 1119
Query: 490 EPLDGAEPAKESGLGAEERCPSAL-------SRGPLDEDGTDEALPPPL-APLPPP---- 537
P+ PA +G E+ + S+G E+G PP L P+ P
Sbjct: 1120 GPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPG--PPGLQGPVGAPGIAG 1177
Query: 538 ----PPPPARKGSY-------VSAF--RPVVKDTESIAKLYGSAREAYGAGPARGPGPGA 584
P P ++G + F P + + G E GP PGP
Sbjct: 1178 GDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGP-P 1236
Query: 585 GSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDDE--------DAQEETEP 636
G G P+ S ++ E N P E + E+ E
Sbjct: 1237 GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEA 1296
Query: 637 SAPSAGGGPDGEQPTGPPSATSSGADGPANSPD----GGSPRPRRRLGPPPAGRPAFGDL 692
P A G P + GPP G DGP +P G P P P PAG+ G
Sbjct: 1297 GPPGAAGPPGAK---GPP-----GDDGPKGNPGPVGFPGDPGPPGE--PGPAGQDGVGGD 1346
Query: 693 AAEDLVRRPERSPPSGGGGYELREPCGPLGGPAPAKVFAPERDEHVKSAAVALGP 747
ED + PP G P G G P A + ++ K A A GP
Sbjct: 1347 KGED-GDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGP 1400
Score = 66.2 bits (160), Expect = 1e-10
Identities = 95/359 (26%), Positives = 110/359 (30%), Gaps = 63/359 (17%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSY 328
G + PGPP K G+ GPPGPP P +G A G GP G G GG G +
Sbjct: 1210 GLQGLPGPPGEKGEN-GDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGE 1268
Query: 329 P------------VIPVPSKGFGLLQKLPPPLF------------------PHPYGFPTA 358
P + P G + PP P P GFP
Sbjct: 1269 PGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGD 1328
Query: 359 FGLCPKKDDPV--LGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMF 416
G P + P G G KG G G G G AG PG PPG PG
Sbjct: 1329 PG-PPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPG----PPGKRGPPGAAGAE 1383
Query: 417 WGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSL---PVP----SYPAAQSQAKAV 469
GA +A A V P P P L P P P A Q
Sbjct: 1384 GRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPP 1443
Query: 470 AAAVAAAAAAAAAAAGS----GAPEPLDGAEPAKESGLGAEERCPSALSRGPLDEDGTDE 525
GS G P + P E G + P DG
Sbjct: 1444 GPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDG--- 1500
Query: 526 ALPPPLAPLPPPPPP--PARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGP 582
+P P PL PP PP P +G K + G ++ GP PGP
Sbjct: 1501 GIPGPAGPLGPPGPPGLPGPQGP---------KGNKGSTGPAGQKGDSGLPGPPGSPGP 1550
Score = 54.3 bits (129), Expect = 5e-07
Identities = 53/162 (32%), Positives = 64/162 (39%), Gaps = 36/162 (22%)
Query: 277 PPHKSLRCGEDEAAGPPGP------PPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPV 330
PP K+ G AG PGP P P ++GL A G GP GP GP G G++ P
Sbjct: 1400 PPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPG 1459
Query: 331 IPVPSKGFGLLQKLPPPL---------FPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGT 381
GL+ + PP P G P A G D + G P G PG
Sbjct: 1460 SKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKG-----DGGIPGPAGPLGPPGP 1514
Query: 382 ----------GSGG--GGAGTGGGAGGPGASHLPPGAGAGPG 411
G+ G G AG G +G PG PPG+ PG
Sbjct: 1515 PGLPGPQGPKGNKGSTGPAGQKGDSGLPG----PPGSPGPPG 1552
Score = 53.5 bits (127), Expect = 9e-07
Identities = 121/493 (24%), Positives = 143/493 (29%), Gaps = 73/493 (14%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSY 328
G + PG P K R GE GPPGPP RG G G G GP G G R
Sbjct: 613 GFDGLPGLPGDKGHR-GERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGT 671
Query: 329 PVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGA 388
P P G+ P P G P G G P+G PG G
Sbjct: 672 PGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPG--------QQGNPGPQGLPGPQGPIGPP 723
Query: 389 GTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATV-YPTFPMF 447
G G G PG + L PGA PG G + + A+ + YP
Sbjct: 724 GEKGPQGKPGLAGL-PGADGPPGHPG------KEGQSGEKGALGPPGPQGPIGYPGPRGV 776
Query: 448 WPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEE 507
A G + + + G P DG E G +
Sbjct: 777 KGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPE-------GPKG 829
Query: 508 RCPSALSRGPLDEDGTDEALPPPLAP-------------LPPPPPPPARKGSYVSAFRPV 554
R GP + G L P P P P KG+ A +P
Sbjct: 830 RAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPG 889
Query: 555 VKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTADE 614
+ GS GP PGP SGG P E
Sbjct: 890 PRGQRGPTGPRGSRG---ARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKG 946
Query: 615 PEVDVESNRFPDDEDAQEET---------------EPSAPSAGGGPDGEQ----PTGPPS 655
P + P + ET P P+ GP GE+ P GPP
Sbjct: 947 PPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPG 1006
Query: 656 ATSSGADGPANSPDG-GSPRPRRRLGPP-PAGRPAFGDLAAEDLVRRPERSPPSGGGGYE 713
G G A G P P+ G PAG F ER P G
Sbjct: 1007 --EQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPG----------ERGLPGAQGAPG 1054
Query: 714 LREPCGPLGGPAP 726
L+ GP G P P
Sbjct: 1055 LKGGEGPQGPPGP 1067
Score = 42.4 bits (98), Expect = 0.002
Identities = 115/497 (23%), Positives = 149/497 (29%), Gaps = 97/497 (19%)
Query: 291 GPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPP--- 347
GPPGP P G+ G GP GP G G G P +P LP P
Sbjct: 454 GPPGPAGP---AGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPG-------ADGLPGPPGT 503
Query: 348 --LFPHPYGFPTAFGLC---------------------PKKDDPVLGAGEPKGGPGTGSG 384
+ P YG + G P + G P GGPG+ SG
Sbjct: 504 MLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGS-SG 562
Query: 385 GGGAGTGGGAGGPGASHLPPGAGAGPG--------GGAMFWGHQPSGAAKDAAAVAAAAA 436
G G GP PPG PG GG G + + +
Sbjct: 563 AKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPG 622
Query: 437 ----AATVYPTFPMFWPA-------AGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAG 485
P P P G + P + A AG
Sbjct: 623 DKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAG 682
Query: 486 -SGAPEPLDGAEPAKESGLGAEERCPSALS----RGPLDEDGTDEAL-PPPLAPLPPPPP 539
G P P P E G ++ P +GP+ G P LA LP
Sbjct: 683 VDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADG 742
Query: 540 PPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGS 599
PP G K+ +S K G+ GP PGP G D +
Sbjct: 743 PPGHPG----------KEGQSGEK--GALGPPGPQGPIGYPGPRGVKGA----DGVRGLK 786
Query: 600 SSYNSASPDVDTADEPEVDVESNRFPDDE-DAQEETEPSAPSAGGGPDGEQPTGPPSATS 658
S D + ++ ++ +R + + E P P GP G+ P +
Sbjct: 787 GSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGD----PGPSGQ 842
Query: 659 SGADGPANSPDGGSPRPRRRLGPP-PAGRPAF----GDLAAEDLVRRP----ERSPPSGG 709
+G G P G P R GP G P F G+ A + +P +R P
Sbjct: 843 AGEKGKLGVP--GLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPR 900
Query: 710 GGYELREPCGPLGGPAP 726
G R GP G P P
Sbjct: 901 GSRGAR---GPTGKPGP 914
Score = 30.4 bits (67), Expect = 7.9
Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 13/61 (21%)
Query: 274 PGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPV 333
PGPP G PGP P +G G G +G GP G G + P+
Sbjct: 1512 PGPP-------------GLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPL 1558
Query: 334 P 334
P
Sbjct: 1559 P 1559
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 73.9 bits (180), Expect = 6e-13
Identities = 113/426 (26%), Positives = 134/426 (31%), Gaps = 73/426 (17%)
Query: 271 EMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPV 330
E P PP G AG G P P Q+G+ G G G GP G G++ P
Sbjct: 1106 ENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPG 1165
Query: 331 IPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGT 390
P G + + PP P P G P+ + G P G G+ G G G
Sbjct: 1166 PPGEKGENGDVGPMGPPGPPGPRG--------PQGPNGADGPQGPPGSVGSVGGVGEKGE 1217
Query: 391 GGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPA 450
G AG PG PPG AG GG P G + AA P
Sbjct: 1218 PGEAGNPG----PPGE-AGVGG--------PKGERGEKGEAGPPGAAGP---------PG 1255
Query: 451 AGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEERCP 510
A P P G P P PA + G+G ++
Sbjct: 1256 AKGPPGDDGPKGNP----------------GPVGFPGDPGPPGEPGPAGQDGVGGDK--- 1296
Query: 511 SALSRGPLDEDGTDEALPPPLAPLPP--PPPPPARKGSYVSAFRPVVKDTESIAKLYGSA 568
EDG D P P P PP PP ++G P E G+
Sbjct: 1297 --------GEDG-DPGQPGPPGPSGEAGPPGPPGKRGP------PGAAGAEGRQGEKGAK 1341
Query: 569 REAYGAGPARGPGPGA--GSGGYVSPDFLSEGSSSYNSAS-PDVDTADEPEVDVESNRFP 625
EA GP GP G G P+ L P D P + P
Sbjct: 1342 GEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLP 1401
Query: 626 DDE-DAQEETEPSAPSAGG--GPDGEQPTGPPSATSSGADGPANSPDGGSPRPRRRLGPP 682
+ D + E P G GP GEQ P DGG P P LGPP
Sbjct: 1402 GLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPP 1461
Query: 683 -PAGRP 687
P G P
Sbjct: 1462 GPPGLP 1467
Score = 69.7 bits (169), Expect = 1e-11
Identities = 150/549 (27%), Positives = 171/549 (31%), Gaps = 109/549 (19%)
Query: 285 GEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKL 344
GE A G G P P QRG G+ G GP G G G P P G
Sbjct: 826 GEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQ 885
Query: 345 PPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPP 404
P FP P G P P KD G PG G G G G PG P
Sbjct: 886 GPVGFPGPKGPPGP----PGKD----------GLPGHPGQRGETGFQGKTGPPG-----P 926
Query: 405 GAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWP-AAGSLPVPSYPAAQ 463
G GP G P+G + + P P AAG P Q
Sbjct: 927 GGVVGPQG--------PTG---ETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQ 975
Query: 464 S-QAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESG-LGAEERCPSALSRGPLDED 521
K A + GAP G P G +G+ SA + GP+
Sbjct: 976 GISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPI--- 1032
Query: 522 GTDEALPPPLAPLPPPPP-----PPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGP 576
LP P PP P P KG A R V+ G AGP
Sbjct: 1033 ----GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ---------GPVGLPGPAGP 1079
Query: 577 ARGPGPGAGSGGYVSPDFL-SEGSSSYNS-----------ASPDVDTAD-EPEVDVESNR 623
A PG G P S+G N +P + D EP +
Sbjct: 1080 AGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGM 1139
Query: 624 FPDDEDAQEETEPSAPSAGGGPDGEQP-TGPPSATSSGAD-GPANSPDGGSPRPRRRLGP 681
F D P P GP G Q GPP D GP P G P PR GP
Sbjct: 1140 FGQKGDEGARGFPGPP----GPIGLQGLPGPPGEKGENGDVGPMGPP--GPPGPRGPQGP 1193
Query: 682 PPAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREP--CGPLGGPAPAKVFAPERDEHVK 739
A P + P S S GG E EP G G P A V P+ + K
Sbjct: 1194 NGADGP-----------QGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEK 1242
Query: 740 SAAVALGPAASYVCTPEAHEPDKED----NHSPADDLETRKSYP-DQRSISQPSPANT-- 792
A G A P A P +D N P +P D +P PA
Sbjct: 1243 GEAGPPGAAG----PPGAKGPPGDDGPKGNPGPV-------GFPGDPGPPGEPGPAGQDG 1291
Query: 793 ---DRGEDG 798
D+GEDG
Sbjct: 1292 VGGDKGEDG 1300
Score = 68.6 bits (166), Expect = 3e-11
Identities = 133/535 (24%), Positives = 168/535 (31%), Gaps = 94/535 (17%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSY 328
GA G P K G+ GPPGPP +G G GP GP GP G G+ +
Sbjct: 853 GARGPTGKPGPKGTSGGD----GPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGH 908
Query: 329 P------------------VIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVL 370
P + P G + P P G P GL
Sbjct: 909 PGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGL-----PGAA 963
Query: 371 GAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAA 430
G KG PG G G G G PG L PGA PG + G P G +
Sbjct: 964 GKEGAKGDPGPQGISGKDGPAGLRGFPGERGL-PGAQGAPG---LKGGEGPQGPPGPVGS 1019
Query: 431 VAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAG-SGAP 489
+A T AG + +P P Q A AG G
Sbjct: 1020 PGERGSAGT-----------AGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ 1068
Query: 490 EPLDGAEPAKESGLGAEERCPSAL-------SRGPLDEDGTDEALPPPL-APLPPP---- 537
P+ PA +G E+ + S+G E+G PP L P+ P
Sbjct: 1069 GPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPG--PPGLQGPVGAPGIAG 1126
Query: 538 ----PPPPARKGSY-------VSAF--RPVVKDTESIAKLYGSAREAYGAGPARGPGPGA 584
P P ++G + F P + + G E GP PGP
Sbjct: 1127 GDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGP-P 1185
Query: 585 GSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDDE--------DAQEETEP 636
G G P+ S ++ E N P E + E+ E
Sbjct: 1186 GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEA 1245
Query: 637 SAPSAGGGPDGEQPTGPPSATSSGADGPANSPD----GGSPRPRRRLGPPPAGRPAFGDL 692
P A G P + GPP G DGP +P G P P P PAG+ G
Sbjct: 1246 GPPGAAGPPGAK---GPP-----GDDGPKGNPGPVGFPGDPGPPGE--PGPAGQDGVGGD 1295
Query: 693 AAEDLVRRPERSPPSGGGGYELREPCGPLGGPAPAKVFAPERDEHVKSAAVALGP 747
ED + PP G P G G P A + ++ K A A GP
Sbjct: 1296 KGED-GDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGP 1349
Score = 66.2 bits (160), Expect = 1e-10
Identities = 95/359 (26%), Positives = 110/359 (30%), Gaps = 63/359 (17%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSY 328
G + PGPP K G+ GPPGPP P +G A G GP G G GG G +
Sbjct: 1159 GLQGLPGPPGEKGEN-GDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGE 1217
Query: 329 P------------VIPVPSKGFGLLQKLPPPLF------------------PHPYGFPTA 358
P + P G + PP P P GFP
Sbjct: 1218 PGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGD 1277
Query: 359 FGLCPKKDDPV--LGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMF 416
G P + P G G KG G G G G AG PG PPG PG
Sbjct: 1278 PG-PPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPG----PPGKRGPPGAAGAE 1332
Query: 417 WGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSL---PVP----SYPAAQSQAKAV 469
GA +A A V P P P L P P P A Q
Sbjct: 1333 GRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPP 1392
Query: 470 AAAVAAAAAAAAAAAGS----GAPEPLDGAEPAKESGLGAEERCPSALSRGPLDEDGTDE 525
GS G P + P E G + P DG
Sbjct: 1393 GPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDG--- 1449
Query: 526 ALPPPLAPLPPPPPP--PARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGP 582
+P P PL PP PP P +G K + G ++ GP PGP
Sbjct: 1450 GIPGPAGPLGPPGPPGLPGPQGP---------KGNKGSTGPAGQKGDSGLPGPPGSPGP 1499
Score = 54.3 bits (129), Expect = 5e-07
Identities = 53/162 (32%), Positives = 64/162 (39%), Gaps = 36/162 (22%)
Query: 277 PPHKSLRCGEDEAAGPPGP------PPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPV 330
PP K+ G AG PGP P P ++GL A G GP GP GP G G++ P
Sbjct: 1349 PPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPG 1408
Query: 331 IPVPSKGFGLLQKLPPPL---------FPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGT 381
GL+ + PP P G P A G D + G P G PG
Sbjct: 1409 SKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKG-----DGGIPGPAGPLGPPGP 1463
Query: 382 ----------GSGG--GGAGTGGGAGGPGASHLPPGAGAGPG 411
G+ G G AG G +G PG PPG+ PG
Sbjct: 1464 PGLPGPQGPKGNKGSTGPAGQKGDSGLPG----PPGSPGPPG 1501
Score = 53.5 bits (127), Expect = 9e-07
Identities = 121/493 (24%), Positives = 143/493 (29%), Gaps = 73/493 (14%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSY 328
G + PG P K R GE GPPGPP RG G G G GP G G R
Sbjct: 562 GFDGLPGLPGDKGHR-GERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGT 620
Query: 329 PVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGA 388
P P G+ P P G P G G P+G PG G
Sbjct: 621 PGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPG--------QQGNPGPQGLPGPQGPIGPP 672
Query: 389 GTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATV-YPTFPMF 447
G G G PG + L PGA PG G + + A+ + YP
Sbjct: 673 GEKGPQGKPGLAGL-PGADGPPGHPG------KEGQSGEKGALGPPGPQGPIGYPGPRGV 725
Query: 448 WPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEE 507
A G + + + G P DG E G +
Sbjct: 726 KGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPE-------GPKG 778
Query: 508 RCPSALSRGPLDEDGTDEALPPPLAP-------------LPPPPPPPARKGSYVSAFRPV 554
R GP + G L P P P P KG+ A +P
Sbjct: 779 RAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPG 838
Query: 555 VKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTADE 614
+ GS GP PGP SGG P E
Sbjct: 839 PRGQRGPTGPRGSRG---ARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKG 895
Query: 615 PEVDVESNRFPDDEDAQEET---------------EPSAPSAGGGPDGEQ----PTGPPS 655
P + P + ET P P+ GP GE+ P GPP
Sbjct: 896 PPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPG 955
Query: 656 ATSSGADGPANSPDG-GSPRPRRRLGPP-PAGRPAFGDLAAEDLVRRPERSPPSGGGGYE 713
G G A G P P+ G PAG F ER P G
Sbjct: 956 --EQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPG----------ERGLPGAQGAPG 1003
Query: 714 LREPCGPLGGPAP 726
L+ GP G P P
Sbjct: 1004 LKGGEGPQGPPGP 1016
Score = 42.4 bits (98), Expect = 0.002
Identities = 115/497 (23%), Positives = 149/497 (29%), Gaps = 97/497 (19%)
Query: 291 GPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPP--- 347
GPPGP P G+ G GP GP G G G P +P LP P
Sbjct: 403 GPPGPAGP---AGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPG-------ADGLPGPPGT 452
Query: 348 --LFPHPYGFPTAFGLC---------------------PKKDDPVLGAGEPKGGPGTGSG 384
+ P YG + G P + G P GGPG+ SG
Sbjct: 453 MLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGS-SG 511
Query: 385 GGGAGTGGGAGGPGASHLPPGAGAGPG--------GGAMFWGHQPSGAAKDAAAVAAAAA 436
G G GP PPG PG GG G + + +
Sbjct: 512 AKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPG 571
Query: 437 ----AATVYPTFPMFWPA-------AGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAG 485
P P P G + P + A AG
Sbjct: 572 DKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAG 631
Query: 486 -SGAPEPLDGAEPAKESGLGAEERCPSALS----RGPLDEDGTDEAL-PPPLAPLPPPPP 539
G P P P E G ++ P +GP+ G P LA LP
Sbjct: 632 VDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADG 691
Query: 540 PPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGS 599
PP G K+ +S K G+ GP PGP G D +
Sbjct: 692 PPGHPG----------KEGQSGEK--GALGPPGPQGPIGYPGPRGVKGA----DGVRGLK 735
Query: 600 SSYNSASPDVDTADEPEVDVESNRFPDDE-DAQEETEPSAPSAGGGPDGEQPTGPPSATS 658
S D + ++ ++ +R + + E P P GP G+ P +
Sbjct: 736 GSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGD----PGPSGQ 791
Query: 659 SGADGPANSPDGGSPRPRRRLGPP-PAGRPAF----GDLAAEDLVRRP----ERSPPSGG 709
+G G P G P R GP G P F G+ A + +P +R P
Sbjct: 792 AGEKGKLGVP--GLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPR 849
Query: 710 GGYELREPCGPLGGPAP 726
G R GP G P P
Sbjct: 850 GSRGAR---GPTGKPGP 863
Score = 30.4 bits (67), Expect = 7.9
Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 13/61 (21%)
Query: 274 PGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPV 333
PGPP G PGP P +G G G +G GP G G + P+
Sbjct: 1461 PGPP-------------GLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPL 1507
Query: 334 P 334
P
Sbjct: 1508 P 1508
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 73.9 bits (180), Expect = 6e-13
Identities = 113/426 (26%), Positives = 134/426 (31%), Gaps = 73/426 (17%)
Query: 271 EMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPV 330
E P PP G AG G P P Q+G+ G G G GP G G++ P
Sbjct: 1145 ENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPG 1204
Query: 331 IPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGT 390
P G + + PP P P G P+ + G P G G+ G G G
Sbjct: 1205 PPGEKGENGDVGPMGPPGPPGPRG--------PQGPNGADGPQGPPGSVGSVGGVGEKGE 1256
Query: 391 GGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPA 450
G AG PG PPG AG GG P G + AA P
Sbjct: 1257 PGEAGNPG----PPGE-AGVGG--------PKGERGEKGEAGPPGAAGP---------PG 1294
Query: 451 AGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEERCP 510
A P P G P P PA + G+G ++
Sbjct: 1295 AKGPPGDDGPKGNP----------------GPVGFPGDPGPPGEPGPAGQDGVGGDK--- 1335
Query: 511 SALSRGPLDEDGTDEALPPPLAPLPP--PPPPPARKGSYVSAFRPVVKDTESIAKLYGSA 568
EDG D P P P PP PP ++G P E G+
Sbjct: 1336 --------GEDG-DPGQPGPPGPSGEAGPPGPPGKRGP------PGAAGAEGRQGEKGAK 1380
Query: 569 REAYGAGPARGPGPGA--GSGGYVSPDFLSEGSSSYNSAS-PDVDTADEPEVDVESNRFP 625
EA GP GP G G P+ L P D P + P
Sbjct: 1381 GEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLP 1440
Query: 626 DDE-DAQEETEPSAPSAGG--GPDGEQPTGPPSATSSGADGPANSPDGGSPRPRRRLGPP 682
+ D + E P G GP GEQ P DGG P P LGPP
Sbjct: 1441 GLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPP 1500
Query: 683 -PAGRP 687
P G P
Sbjct: 1501 GPPGLP 1506
Score = 69.7 bits (169), Expect = 1e-11
Identities = 150/549 (27%), Positives = 171/549 (31%), Gaps = 109/549 (19%)
Query: 285 GEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKL 344
GE A G G P P QRG G+ G GP G G G P P G
Sbjct: 865 GEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQ 924
Query: 345 PPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPP 404
P FP P G P P KD G PG G G G G PG P
Sbjct: 925 GPVGFPGPKGPPGP----PGKD----------GLPGHPGQRGETGFQGKTGPPG-----P 965
Query: 405 GAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWP-AAGSLPVPSYPAAQ 463
G GP G P+G + + P P AAG P Q
Sbjct: 966 GGVVGPQG--------PTG---ETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQ 1014
Query: 464 S-QAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESG-LGAEERCPSALSRGPLDED 521
K A + GAP G P G +G+ SA + GP+
Sbjct: 1015 GISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPI--- 1071
Query: 522 GTDEALPPPLAPLPPPPP-----PPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGP 576
LP P PP P P KG A R V+ G AGP
Sbjct: 1072 ----GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ---------GPVGLPGPAGP 1118
Query: 577 ARGPGPGAGSGGYVSPDFL-SEGSSSYNS-----------ASPDVDTAD-EPEVDVESNR 623
A PG G P S+G N +P + D EP +
Sbjct: 1119 AGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGM 1178
Query: 624 FPDDEDAQEETEPSAPSAGGGPDGEQP-TGPPSATSSGAD-GPANSPDGGSPRPRRRLGP 681
F D P P GP G Q GPP D GP P G P PR GP
Sbjct: 1179 FGQKGDEGARGFPGPP----GPIGLQGLPGPPGEKGENGDVGPMGPP--GPPGPRGPQGP 1232
Query: 682 PPAGRPAFGDLAAEDLVRRPERSPPSGGGGYELREP--CGPLGGPAPAKVFAPERDEHVK 739
A P + P S S GG E EP G G P A V P+ + K
Sbjct: 1233 NGADGP-----------QGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEK 1281
Query: 740 SAAVALGPAASYVCTPEAHEPDKED----NHSPADDLETRKSYP-DQRSISQPSPANT-- 792
A G A P A P +D N P +P D +P PA
Sbjct: 1282 GEAGPPGAAG----PPGAKGPPGDDGPKGNPGPV-------GFPGDPGPPGEPGPAGQDG 1330
Query: 793 ---DRGEDG 798
D+GEDG
Sbjct: 1331 VGGDKGEDG 1339
Score = 68.6 bits (166), Expect = 3e-11
Identities = 133/535 (24%), Positives = 168/535 (31%), Gaps = 94/535 (17%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSY 328
GA G P K G+ GPPGPP +G G GP GP GP G G+ +
Sbjct: 892 GARGPTGKPGPKGTSGGD----GPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGH 947
Query: 329 P------------------VIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVL 370
P + P G + P P G P GL
Sbjct: 948 PGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGL-----PGAA 1002
Query: 371 GAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAA 430
G KG PG G G G G PG L PGA PG + G P G +
Sbjct: 1003 GKEGAKGDPGPQGISGKDGPAGLRGFPGERGL-PGAQGAPG---LKGGEGPQGPPGPVGS 1058
Query: 431 VAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAG-SGAP 489
+A T AG + +P P Q A AG G
Sbjct: 1059 PGERGSAGT-----------AGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ 1107
Query: 490 EPLDGAEPAKESGLGAEERCPSAL-------SRGPLDEDGTDEALPPPL-APLPPP---- 537
P+ PA +G E+ + S+G E+G PP L P+ P
Sbjct: 1108 GPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPG--PPGLQGPVGAPGIAG 1165
Query: 538 ----PPPPARKGSY-------VSAF--RPVVKDTESIAKLYGSAREAYGAGPARGPGPGA 584
P P ++G + F P + + G E GP PGP
Sbjct: 1166 GDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGP-P 1224
Query: 585 GSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDDE--------DAQEETEP 636
G G P+ S ++ E N P E + E+ E
Sbjct: 1225 GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEA 1284
Query: 637 SAPSAGGGPDGEQPTGPPSATSSGADGPANSPD----GGSPRPRRRLGPPPAGRPAFGDL 692
P A G P + GPP G DGP +P G P P P PAG+ G
Sbjct: 1285 GPPGAAGPPGAK---GPP-----GDDGPKGNPGPVGFPGDPGPPGE--PGPAGQDGVGGD 1334
Query: 693 AAEDLVRRPERSPPSGGGGYELREPCGPLGGPAPAKVFAPERDEHVKSAAVALGP 747
ED + PP G P G G P A + ++ K A A GP
Sbjct: 1335 KGED-GDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGP 1388
Score = 66.2 bits (160), Expect = 1e-10
Identities = 95/359 (26%), Positives = 110/359 (30%), Gaps = 63/359 (17%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSY 328
G + PGPP K G+ GPPGPP P +G A G GP G G GG G +
Sbjct: 1198 GLQGLPGPPGEKGEN-GDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGE 1256
Query: 329 P------------VIPVPSKGFGLLQKLPPPLF------------------PHPYGFPTA 358
P + P G + PP P P GFP
Sbjct: 1257 PGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGD 1316
Query: 359 FGLCPKKDDPV--LGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMF 416
G P + P G G KG G G G G AG PG PPG PG
Sbjct: 1317 PG-PPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPG----PPGKRGPPGAAGAE 1371
Query: 417 WGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSL---PVP----SYPAAQSQAKAV 469
GA +A A V P P P L P P P A Q
Sbjct: 1372 GRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPP 1431
Query: 470 AAAVAAAAAAAAAAAGS----GAPEPLDGAEPAKESGLGAEERCPSALSRGPLDEDGTDE 525
GS G P + P E G + P DG
Sbjct: 1432 GPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDG--- 1488
Query: 526 ALPPPLAPLPPPPPP--PARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGP 582
+P P PL PP PP P +G K + G ++ GP PGP
Sbjct: 1489 GIPGPAGPLGPPGPPGLPGPQGP---------KGNKGSTGPAGQKGDSGLPGPPGSPGP 1538
Score = 54.3 bits (129), Expect = 5e-07
Identities = 53/162 (32%), Positives = 64/162 (39%), Gaps = 36/162 (22%)
Query: 277 PPHKSLRCGEDEAAGPPGP------PPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPV 330
PP K+ G AG PGP P P ++GL A G GP GP GP G G++ P
Sbjct: 1388 PPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPG 1447
Query: 331 IPVPSKGFGLLQKLPPPL---------FPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGT 381
GL+ + PP P G P A G D + G P G PG
Sbjct: 1448 SKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKG-----DGGIPGPAGPLGPPGP 1502
Query: 382 ----------GSGG--GGAGTGGGAGGPGASHLPPGAGAGPG 411
G+ G G AG G +G PG PPG+ PG
Sbjct: 1503 PGLPGPQGPKGNKGSTGPAGQKGDSGLPG----PPGSPGPPG 1540
Score = 53.5 bits (127), Expect = 9e-07
Identities = 121/493 (24%), Positives = 143/493 (29%), Gaps = 73/493 (14%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSY 328
G + PG P K R GE GPPGPP RG G G G GP G G R
Sbjct: 601 GFDGLPGLPGDKGHR-GERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGT 659
Query: 329 PVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGA 388
P P G+ P P G P G G P+G PG G
Sbjct: 660 PGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPG--------QQGNPGPQGLPGPQGPIGPP 711
Query: 389 GTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATV-YPTFPMF 447
G G G PG + L PGA PG G + + A+ + YP
Sbjct: 712 GEKGPQGKPGLAGL-PGADGPPGHPG------KEGQSGEKGALGPPGPQGPIGYPGPRGV 764
Query: 448 WPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEE 507
A G + + + G P DG E G +
Sbjct: 765 KGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPE-------GPKG 817
Query: 508 RCPSALSRGPLDEDGTDEALPPPLAP-------------LPPPPPPPARKGSYVSAFRPV 554
R GP + G L P P P P KG+ A +P
Sbjct: 818 RAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPG 877
Query: 555 VKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTADE 614
+ GS GP PGP SGG P E
Sbjct: 878 PRGQRGPTGPRGSRG---ARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKG 934
Query: 615 PEVDVESNRFPDDEDAQEET---------------EPSAPSAGGGPDGEQ----PTGPPS 655
P + P + ET P P+ GP GE+ P GPP
Sbjct: 935 PPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPG 994
Query: 656 ATSSGADGPANSPDG-GSPRPRRRLGPP-PAGRPAFGDLAAEDLVRRPERSPPSGGGGYE 713
G G A G P P+ G PAG F ER P G
Sbjct: 995 --EQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPG----------ERGLPGAQGAPG 1042
Query: 714 LREPCGPLGGPAP 726
L+ GP G P P
Sbjct: 1043 LKGGEGPQGPPGP 1055
Score = 42.4 bits (98), Expect = 0.002
Identities = 115/497 (23%), Positives = 149/497 (29%), Gaps = 97/497 (19%)
Query: 291 GPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPP--- 347
GPPGP P G+ G GP GP G G G P +P LP P
Sbjct: 442 GPPGPAGP---AGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPG-------ADGLPGPPGT 491
Query: 348 --LFPHPYGFPTAFGLC---------------------PKKDDPVLGAGEPKGGPGTGSG 384
+ P YG + G P + G P GGPG+ SG
Sbjct: 492 MLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGS-SG 550
Query: 385 GGGAGTGGGAGGPGASHLPPGAGAGPG--------GGAMFWGHQPSGAAKDAAAVAAAAA 436
G G GP PPG PG GG G + + +
Sbjct: 551 AKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPG 610
Query: 437 ----AATVYPTFPMFWPA-------AGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAG 485
P P P G + P + A AG
Sbjct: 611 DKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAG 670
Query: 486 -SGAPEPLDGAEPAKESGLGAEERCPSALS----RGPLDEDGTDEAL-PPPLAPLPPPPP 539
G P P P E G ++ P +GP+ G P LA LP
Sbjct: 671 VDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADG 730
Query: 540 PPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEGS 599
PP G K+ +S K G+ GP PGP G D +
Sbjct: 731 PPGHPG----------KEGQSGEK--GALGPPGPQGPIGYPGPRGVKGA----DGVRGLK 774
Query: 600 SSYNSASPDVDTADEPEVDVESNRFPDDE-DAQEETEPSAPSAGGGPDGEQPTGPPSATS 658
S D + ++ ++ +R + + E P P GP G+ P +
Sbjct: 775 GSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGD----PGPSGQ 830
Query: 659 SGADGPANSPDGGSPRPRRRLGPP-PAGRPAF----GDLAAEDLVRRP----ERSPPSGG 709
+G G P G P R GP G P F G+ A + +P +R P
Sbjct: 831 AGEKGKLGVP--GLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPR 888
Query: 710 GGYELREPCGPLGGPAP 726
G R GP G P P
Sbjct: 889 GSRGAR---GPTGKPGP 902
Score = 30.4 bits (67), Expect = 7.9
Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 13/61 (21%)
Query: 274 PGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPV 333
PGPP G PGP P +G G G +G GP G G + P+
Sbjct: 1500 PGPP-------------GLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPL 1546
Query: 334 P 334
P
Sbjct: 1547 P 1547
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 72.8 bits (177), Expect = 1e-12
Identities = 126/503 (25%), Positives = 157/503 (31%), Gaps = 94/503 (18%)
Query: 267 RCGAEMAPGPPPHKSLRCGEDEAA--GPPGPP-------------------PPHPQRGLG 305
R G E PGPP + GE A GPPGPP PP P G
Sbjct: 732 RIGLEGPPGPPGFPGPK-GEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTG 790
Query: 306 LATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKK 365
L G GP G GP G G P +P G G+ PP P P G P G+ +K
Sbjct: 791 L-DGLPGPKGDVGPNGQPGPMGPPGLP----GIGVQGPPGPPGIPGPIGQPGLHGIPGEK 845
Query: 366 DDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAG--PGGGAMFWGHQPSG 423
DP + G PG G G G G PG+ LP AGA PG P G
Sbjct: 846 GDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPG 905
Query: 424 AAKDAAAVAAAAAAATVYPTFPMFWPAAGSLP-VPSYPAAQSQAKAVAAAVAAAAAAAAA 482
P P+ P +P + Q Q + +
Sbjct: 906 ------------------PPGPLGIPGRSGVPGLKGDDGLQGQ-----PGLPGPTGEKGS 942
Query: 483 AAGSGAPEPLDGAEP--AKESGLGAEERCPSALS-RGPLDEDG-TDEALPPPLAPLPPPP 538
G P P +P G E P GP G + P L+ P P
Sbjct: 943 KGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLP 1002
Query: 539 PPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEG 598
PP KG+ +P + + G G PGP G SP +
Sbjct: 1003 GPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQK 1062
Query: 599 SSSYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPPSAT- 657
+ P + + P + + EP P G P + G P
Sbjct: 1063 G---DKGDPGISSIGLPGL------------PGPKGEPGLPGYPGNPGIKGSVGDPGLPG 1107
Query: 658 ---SSGADGPANSP----DGGSPRPRRRLGPPPAGRPAFGDLAAEDLVRRPERSPPSGGG 710
+ GA G P G P P+ GPP G P P P GGG
Sbjct: 1108 LPGTPGAKGQPGLPGFPGTPGPPGPKGISGPP--GNPGL-----------PGEPGPVGGG 1154
Query: 711 GYELRE-PCGPLGGPAPAKVFAP 732
G+ + P G G P + P
Sbjct: 1155 GHPGQPGPPGEKGKPGQDGIPGP 1177
Score = 64.3 bits (155), Expect = 5e-10
Identities = 124/508 (24%), Positives = 156/508 (30%), Gaps = 95/508 (18%)
Query: 274 PGPP--PHKSLRCGEDEAAGPPGPPP-PHPQRGLGLATGASGPAG-PGGPG-----GGAG 324
PG P P + G+ GPPGPP P+ G G+ G G G PG PG G G
Sbjct: 318 PGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPG 377
Query: 325 VRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSG 384
++ P +P P G ++ PP FP G K D+ G P G PG
Sbjct: 378 IQGPPGLPGP-PGAAVMGPPGPPGFPGERG--------QKGDEGPPGISIP-GPPGLDGQ 427
Query: 385 GGGAGTGGGAGGPGASHL----------PPGAGAGPGGGAMFWGHQPSGAAKDAA--AVA 432
G G G GP H+ PPG PG + G D +
Sbjct: 428 PGAPGL-PGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIG 486
Query: 433 AAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPL 492
+ P P GSL P + Q AG+ P+ L
Sbjct: 487 TGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQ------------------AGATGPKGL 528
Query: 493 DGAEPAKES-GLGAEERCPSALSRGPLDEDGTDEALPPPLAPLPPPPPPPARKGSYVSAF 551
G A + G + P + P + E P LP P P + G
Sbjct: 529 PGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDG------ 582
Query: 552 RPVVKDTESIAKLYGSAREAYG------AGPARGPG-PG--AGSGGYVSPDFLSEGSSSY 602
+ L G E G GP PG PG G P F G
Sbjct: 583 ---------LPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGE 633
Query: 603 NSASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPPSATS---- 658
+P + P + Q T+P P G P + G P
Sbjct: 634 KGIQGVAGNPGQPGIP-----GPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQ 688
Query: 659 ------SGADGPANSPDGGSPRPRRRLG----PPPAGRPAF-GDLAAEDLVRRPERSPPS 707
G+ G P G P P G P P G P G + E P P
Sbjct: 689 PGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPK 748
Query: 708 GGGGYELREPCGPLGGPAPAKVFAPERD 735
G G+ L P GP G P P+ D
Sbjct: 749 GEPGFALPGPPGPPGLPGFKGALGPKGD 776
Score = 55.8 bits (133), Expect = 2e-07
Identities = 129/533 (24%), Positives = 159/533 (29%), Gaps = 89/533 (16%)
Query: 269 GAEMAPGPP--------PHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPG 320
G + PGPP P + G PG P P +GL TG GP GP GP
Sbjct: 141 GLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPP 200
Query: 321 GGAGVRSYPVIPVPSKGFGL-------------LQKLPPP---LFPHPYGFPTAFGLCPK 364
G G P +P P GL LQ P P + F K
Sbjct: 201 GLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEF---QK 257
Query: 365 KDDPVLGAGEPKGGPG----TGSGGGGAGTGGGAGGPGASHLP--------PGAGAGPG- 411
D + G P G PG G GG G G G PG P PG PG
Sbjct: 258 GDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGD 317
Query: 412 -GGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQA--KA 468
G G K P + G++ +P P + +
Sbjct: 318 PGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPG 377
Query: 469 VAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEERCPSALSRGPLDEDGTDEA-- 526
+ AA G P G E G +E P GP DG A
Sbjct: 378 IQGPPGLPGPPGAAVMGPPGPPGFPG-----ERGQKGDEGPPGISIPGPPGLDGQPGAPG 432
Query: 527 LPPPLAP----LPP--------PPPPPARKGSYVSAFRPVVKDT--ESIAKLYGSAREAY 572
LP P P +PP PP PP G VK ++ G+
Sbjct: 433 LPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGP 492
Query: 573 GAGPARG--PGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDD--- 627
P PGP G + ++ P + A S P D
Sbjct: 493 PGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILT 552
Query: 628 -----EDAQEETEPSAPSAGG-----GPDG----EQPTGPPSA-TSSGADGPANSPD-GG 671
D E P AP G G DG P G P T G GP +P G
Sbjct: 553 FPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPG 612
Query: 672 SPRPRRRLGPPPAGRPA-FGDLAAEDLVRRPER---SPPSGGGGYELREPCGP 720
P +GPP G P G+ + + P + P G G + +P P
Sbjct: 613 LPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKP 665
Score = 55.1 bits (131), Expect = 3e-07
Identities = 103/432 (23%), Positives = 124/432 (28%), Gaps = 59/432 (13%)
Query: 285 GEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPVPS--KGFGLLQ 342
GE GPPGPP P G G +G G G G++ P +P P+ KG
Sbjct: 896 GEMGMMGPPGPPGP---------LGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEP 946
Query: 343 KLPPPLFPHPYGFPTAFGLCPKKDDPVL----GAGEPKGGPGTGSGGGGAGTGGGAGGPG 398
LP P P P P G +K +P L G PKG G G G G G PG
Sbjct: 947 GLPGP--PGPMD-PNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPG 1003
Query: 399 ASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAA-GSLPVP 457
PPG PG P G + P P P GS +P
Sbjct: 1004 ----PPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLP 1059
Query: 458 SYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEERCPSALSRGP 517
+ + + G P + GL P A +
Sbjct: 1060 GQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQ-- 1117
Query: 518 LDEDGTDEALPPPLAPLPPPPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPA 577
P L P P PP KG + L G G G
Sbjct: 1118 -----------PGLPGFPGTPGPPGPKG---------ISGPPGNPGLPGEPGPVGGGGHP 1157
Query: 578 RGPGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEPS 637
PGP G P P + S + D P
Sbjct: 1158 GQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPG 1217
Query: 638 APSAGGGPD-----GEQ-PTGPPSATSSGADGPANSP----DGGSPRPRRRLGPP----P 683
P G P G Q P GPP + +GP +P G P P G P P
Sbjct: 1218 LPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGPTGFQGLPGPEGP 1277
Query: 684 AGRPAFGDLAAE 695
G P G + E
Sbjct: 1278 PGLPGNGGIKGE 1289
Score = 51.6 bits (122), Expect = 3e-06
Identities = 56/158 (35%), Positives = 61/158 (38%), Gaps = 25/158 (15%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGP-----PPPHP-------QRGLGLATGASGPAGP 316
G E PGP K G+D GPPGP PP P G+ GA GP G
Sbjct: 66 GPEGPPGPRGQK----GDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGI 121
Query: 317 GGPGGGAGVRSYPVIPVPSKGFGLLQKLP-PPLFPHPYGFPTAFGLCPKKDDPVLGAGEP 375
G G G R +P P GF LQ P PP P G P + + P G P
Sbjct: 122 PGCNGTKGERGFPGSP----GFPGLQGPPGPPGIPGMKGEPGSI-IMSSLPGPKGNPGYP 176
Query: 376 KGGPGTGSGGGGAGTGGGAGGPGASHL--PPGAGAGPG 411
G PG G G G G PG L PPG PG
Sbjct: 177 -GPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPG 213
Score = 51.6 bits (122), Expect = 3e-06
Identities = 44/131 (33%), Positives = 49/131 (37%), Gaps = 15/131 (11%)
Query: 291 GPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPPLFP 350
GPPG P Q+G G G G G GP G G +P + P G P P
Sbjct: 1193 GPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPG----SPGPALE 1248
Query: 351 HPYGFPTAFGLCPKKDDPV--LGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHL------ 402
P G P G P + P G P+G PG GG G G G PG L
Sbjct: 1249 GPKGNPGPQG-PPGRPGPTGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGD 1307
Query: 403 --PPGAGAGPG 411
PPG PG
Sbjct: 1308 QGPPGLQGNPG 1318
Score = 50.8 bits (120), Expect = 6e-06
Identities = 46/143 (32%), Positives = 52/143 (36%), Gaps = 9/143 (6%)
Query: 274 PGPPPHKSLR--CGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVI 331
PG P + ++ G+ G PG P Q GL G GP GP G G G P
Sbjct: 1088 PGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGE 1147
Query: 332 PVPSKGFGLLQKLPPP---LFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGA 388
P P G G + PP P G P G + P G P G PG G
Sbjct: 1148 PGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDG 1207
Query: 389 GTGGGAGGPGASHLPPGAGAGPG 411
G G G PG PG PG
Sbjct: 1208 GLPGIPGNPGL----PGPKGEPG 1226
Score = 49.7 bits (117), Expect = 1e-05
Identities = 54/147 (36%), Positives = 59/147 (40%), Gaps = 13/147 (8%)
Query: 269 GAEMAPGPP--PHKSLRC--GEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAG 324
G + PGPP P +L G GPPG P P +GL G GP G G GG G
Sbjct: 1232 GVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGPTGFQGL---PGPEGPPGLPGNGGIKG 1288
Query: 325 VRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSG 384
+ P P GL PP G P GL K DP L G P G PG
Sbjct: 1289 EKGNPGQPGLPGLPGLKGDQGPPGL---QGNPGRPGLNGMKGDPGL-PGVP-GFPGMKGP 1343
Query: 385 GGGAGTGGGAGGPGASHLPPGAGAGPG 411
G G+ G G PG PPG PG
Sbjct: 1344 SGVPGSAGPEGEPGLIG-PPGPPGLPG 1369
Score = 48.1 bits (113), Expect = 4e-05
Identities = 134/522 (25%), Positives = 166/522 (31%), Gaps = 100/522 (19%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGP--------------PPPHPQR-GLGLATGASGP 313
G+ APG P G+D G PGP PP +P GL G GP
Sbjct: 564 GSPGAPGLPGLPGTP-GQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGP 622
Query: 314 AGPGGPG--------GGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKK 365
G G PG G AG P IP P G Q + P P G P G
Sbjct: 623 PGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPG--QTITQPGKPGLPGNPGRDGDVGLP 680
Query: 366 DDPVLGAGEP--------KGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFW 417
DP L G+P KG PG G G G G G PG PPGA PG +
Sbjct: 681 GDPGL-PGQPGLPGIPGSKGEPGI-PGIGLPGPPGPKGFPGIPG-PPGAPGTPGRIGLEG 737
Query: 418 GHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAG-----SLPVPSYPAAQSQAKAVAAA 472
P G A P P F A G P P P ++
Sbjct: 738 PPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRT-------G 790
Query: 473 VAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEERCPSALSRGPLDEDGTDEALP---- 528
+ +G P P+ P G+G + GP+ + G +P
Sbjct: 791 LDGLPGPKGDVGPNGQPGPMG---PPGLPGIGVQGPPGPPGIPGPIGQPGL-HGIPGEKG 846
Query: 529 ---PPLAPLPPPPPP------PARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARG 579
PP +P PP P G P + + G+ E GP
Sbjct: 847 DPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGP 906
Query: 580 PGP-----GAGSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDD--EDAQE 632
PGP +G G D L +G + + + EP + + E
Sbjct: 907 PGPLGIPGRSGVPGLKGDDGL-QGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGE 965
Query: 633 ETEPSAPSAGG--GPDGEQPTGPPSATSSGADGPANSPDGGSPRPRRRLGPPPAGRPAFG 690
+ EP P G GP G Q G P G G + P G P P P P G P
Sbjct: 966 KGEPGLPGIPGVSGPKGYQ--GLPG--DPGQPGLSGQP--GLPGP-----PGPKGNPG-- 1012
Query: 691 DLAAEDLVRRPERSPPSGGGGYELREPCGPLGGPAPAKVFAP 732
L +P P G L+ G +G P P V P
Sbjct: 1013 ------LPGQPGLIGPPG-----LKGTIGDMGFPGPQGVEGP 1043
Score = 47.4 bits (111), Expect = 6e-05
Identities = 50/148 (33%), Positives = 57/148 (38%), Gaps = 25/148 (16%)
Query: 274 PGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPV 333
PGPP K + +GPPG P + G G G G GP G G IP
Sbjct: 1127 PGPPGPKGI-------SGPPGNPGLPGEPG---PVGGGGHPGQPGPPGEKGKPGQDGIPG 1176
Query: 334 PSKGFGLLQKLPP--PLFPHPYGFPTAFGLCPKKDDPVL-------GAGEPKGGPGTGSG 384
P+ QK P P F +P G P GL +K D L G PKG PG
Sbjct: 1177 PAG-----QKGEPGQPGFGNP-GPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGF 1230
Query: 385 GGGAGTGGGAGGPGASHLPPGAGAGPGG 412
G G G G PG + P GP G
Sbjct: 1231 PGVQGPPGPPGSPGPALEGPKGNPGPQG 1258
Score = 45.4 bits (106), Expect = 2e-04
Identities = 49/148 (33%), Positives = 60/148 (40%), Gaps = 15/148 (10%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSY 328
G + PG P ++ G+ G PG P G+ +G G AGP G G G
Sbjct: 1312 GLQGNPGRPGLNGMK-GDPGLPGVPGFP------GMKGPSGVPGSAGPEGEPGLIGPPGP 1364
Query: 329 PVIPVPSKGFGLLQK--LPPPLFPHPYGFPTAFGL-CPKKDDPVLGAGEPKGGPGTGSGG 385
P +P PS G ++ K PP P G P GL P+ + G P G PG
Sbjct: 1365 PGLPGPS-GQSIIIKGDAGPPGIP---GQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLP 1420
Query: 386 GGAGTGGGAGGPGASHLPPGAGA-GPGG 412
G G GG G PG P G GP G
Sbjct: 1421 GFDGAGGRKGDPGLPGQPGTRGLDGPPG 1448
Score = 41.2 bits (95), Expect = 0.004
Identities = 48/129 (37%), Positives = 50/129 (38%), Gaps = 22/129 (17%)
Query: 285 GEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKL 344
GE G PG HP GL G GP GP G G G+ P P P G
Sbjct: 45 GEKGERGFPGLEG-HP--GLPGFPGPEGPPGPRGQKGDDGI---PGPPGPKGIRG----- 93
Query: 345 PPPLFPHPYGFPTAFGL--CPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHL 402
PP P GFP GL P D GA P+G PG G G G G PG
Sbjct: 94 -PPGLP---GFPGTPGLPGMPGHD----GAPGPQGIPGCNGTKGERGFPGSPGFPGLQG- 144
Query: 403 PPGAGAGPG 411
PPG PG
Sbjct: 145 PPGPPGIPG 153
Score = 41.2 bits (95), Expect = 0.004
Identities = 54/153 (35%), Positives = 62/153 (40%), Gaps = 15/153 (9%)
Query: 263 NGGTRCGAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASG-PAGPGGPG- 320
NGG + G + PG P L G GPPG + GL G G P PG PG
Sbjct: 1283 NGGIK-GEKGNPGQPGLPGLP-GLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGM 1340
Query: 321 -GGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLG-AGEP--K 376
G +GV P P GL+ PP P P G + K D G G+P K
Sbjct: 1341 KGPSGV---PGSAGPEGEPGLIGPPGPPGLPGPSG----QSIIIKGDAGPPGIPGQPGLK 1393
Query: 377 GGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAG 409
G PG G G G G PG + LP GAG
Sbjct: 1394 GLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAG 1426
Score = 40.0 bits (92), Expect = 0.010
Identities = 42/135 (31%), Positives = 47/135 (34%), Gaps = 39/135 (28%)
Query: 274 PGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIPV 333
PGP + G+ AGPPG P +GL G G GP GP G G P
Sbjct: 1368 PGPSGQSIIIKGD---AGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLP---- 1420
Query: 334 PSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGG 393
GF A G +K DP L G PGT G G G
Sbjct: 1421 --------------------GFDGAGG---RKGDPGL-----PGQPGTRGLDGPPGPDGL 1452
Query: 394 AGGPGASHLPPGAGA 408
G PG PPG +
Sbjct: 1453 QGPPG----PPGTSS 1463
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 72.8 bits (177), Expect = 1e-12
Identities = 126/503 (25%), Positives = 157/503 (31%), Gaps = 94/503 (18%)
Query: 267 RCGAEMAPGPPPHKSLRCGEDEAA--GPPGPP-------------------PPHPQRGLG 305
R G E PGPP + GE A GPPGPP PP P G
Sbjct: 732 RIGLEGPPGPPGFPGPK-GEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTG 790
Query: 306 LATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKK 365
L G GP G GP G G P +P G G+ PP P P G P G+ +K
Sbjct: 791 L-DGLPGPKGDVGPNGQPGPMGPPGLP----GIGVQGPPGPPGIPGPIGQPGLHGIPGEK 845
Query: 366 DDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAG--PGGGAMFWGHQPSG 423
DP + G PG G G G G PG+ LP AGA PG P G
Sbjct: 846 GDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPG 905
Query: 424 AAKDAAAVAAAAAAATVYPTFPMFWPAAGSLP-VPSYPAAQSQAKAVAAAVAAAAAAAAA 482
P P+ P +P + Q Q + +
Sbjct: 906 ------------------PPGPLGIPGRSGVPGLKGDDGLQGQ-----PGLPGPTGEKGS 942
Query: 483 AAGSGAPEPLDGAEP--AKESGLGAEERCPSALS-RGPLDEDG-TDEALPPPLAPLPPPP 538
G P P +P G E P GP G + P L+ P P
Sbjct: 943 KGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLP 1002
Query: 539 PPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFLSEG 598
PP KG+ +P + + G G PGP G SP +
Sbjct: 1003 GPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQK 1062
Query: 599 SSSYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPPSAT- 657
+ P + + P + + EP P G P + G P
Sbjct: 1063 G---DKGDPGISSIGLPGL------------PGPKGEPGLPGYPGNPGIKGSVGDPGLPG 1107
Query: 658 ---SSGADGPANSP----DGGSPRPRRRLGPPPAGRPAFGDLAAEDLVRRPERSPPSGGG 710
+ GA G P G P P+ GPP G P P P GGG
Sbjct: 1108 LPGTPGAKGQPGLPGFPGTPGPPGPKGISGPP--GNPGL-----------PGEPGPVGGG 1154
Query: 711 GYELRE-PCGPLGGPAPAKVFAP 732
G+ + P G G P + P
Sbjct: 1155 GHPGQPGPPGEKGKPGQDGIPGP 1177
Score = 64.3 bits (155), Expect = 5e-10
Identities = 124/508 (24%), Positives = 156/508 (30%), Gaps = 95/508 (18%)
Query: 274 PGPP--PHKSLRCGEDEAAGPPGPPP-PHPQRGLGLATGASGPAG-PGGPG-----GGAG 324
PG P P + G+ GPPGPP P+ G G+ G G G PG PG G G
Sbjct: 318 PGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPG 377
Query: 325 VRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPGTGSG 384
++ P +P P G ++ PP FP G K D+ G P G PG
Sbjct: 378 IQGPPGLPGP-PGAAVMGPPGPPGFPGERG--------QKGDEGPPGISIP-GPPGLDGQ 427
Query: 385 GGGAGTGGGAGGPGASHL----------PPGAGAGPGGGAMFWGHQPSGAAKDAA--AVA 432
G G G GP H+ PPG PG + G D +
Sbjct: 428 PGAPGL-PGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIG 486
Query: 433 AAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPL 492
+ P P GSL P + Q AG+ P+ L
Sbjct: 487 TGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQ------------------AGATGPKGL 528
Query: 493 DGAEPAKES-GLGAEERCPSALSRGPLDEDGTDEALPPPLAPLPPPPPPPARKGSYVSAF 551
G A + G + P + P + E P LP P P + G
Sbjct: 529 PGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDG------ 582
Query: 552 RPVVKDTESIAKLYGSAREAYG------AGPARGPG-PG--AGSGGYVSPDFLSEGSSSY 602
+ L G E G GP PG PG G P F G
Sbjct: 583 ---------LPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGE 633
Query: 603 NSASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPPSATS---- 658
+P + P + Q T+P P G P + G P
Sbjct: 634 KGIQGVAGNPGQPGIP-----GPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQ 688
Query: 659 ------SGADGPANSPDGGSPRPRRRLG----PPPAGRPAF-GDLAAEDLVRRPERSPPS 707
G+ G P G P P G P P G P G + E P P
Sbjct: 689 PGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPK 748
Query: 708 GGGGYELREPCGPLGGPAPAKVFAPERD 735
G G+ L P GP G P P+ D
Sbjct: 749 GEPGFALPGPPGPPGLPGFKGALGPKGD 776
Score = 55.8 bits (133), Expect = 2e-07
Identities = 129/533 (24%), Positives = 159/533 (29%), Gaps = 89/533 (16%)
Query: 269 GAEMAPGPP--------PHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPG 320
G + PGPP P + G PG P P +GL TG GP GP GP
Sbjct: 141 GLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPP 200
Query: 321 GGAGVRSYPVIPVPSKGFGL-------------LQKLPPP---LFPHPYGFPTAFGLCPK 364
G G P +P P GL LQ P P + F K
Sbjct: 201 GLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEF---QK 257
Query: 365 KDDPVLGAGEPKGGPG----TGSGGGGAGTGGGAGGPGASHLP--------PGAGAGPG- 411
D + G P G PG G GG G G G PG P PG PG
Sbjct: 258 GDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGD 317
Query: 412 -GGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQA--KA 468
G G K P + G++ +P P + +
Sbjct: 318 PGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPG 377
Query: 469 VAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEERCPSALSRGPLDEDGTDEA-- 526
+ AA G P G E G +E P GP DG A
Sbjct: 378 IQGPPGLPGPPGAAVMGPPGPPGFPG-----ERGQKGDEGPPGISIPGPPGLDGQPGAPG 432
Query: 527 LPPPLAP----LPP--------PPPPPARKGSYVSAFRPVVKDT--ESIAKLYGSAREAY 572
LP P P +PP PP PP G VK ++ G+
Sbjct: 433 LPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGP 492
Query: 573 GAGPARG--PGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDD--- 627
P PGP G + ++ P + A S P D
Sbjct: 493 PGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILT 552
Query: 628 -----EDAQEETEPSAPSAGG-----GPDG----EQPTGPPSA-TSSGADGPANSPD-GG 671
D E P AP G G DG P G P T G GP +P G
Sbjct: 553 FPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPG 612
Query: 672 SPRPRRRLGPPPAGRPA-FGDLAAEDLVRRPER---SPPSGGGGYELREPCGP 720
P +GPP G P G+ + + P + P G G + +P P
Sbjct: 613 LPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKP 665
Score = 51.6 bits (122), Expect = 3e-06
Identities = 56/158 (35%), Positives = 61/158 (38%), Gaps = 25/158 (15%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGP-----PPPHP-------QRGLGLATGASGPAGP 316
G E PGP K G+D GPPGP PP P G+ GA GP G
Sbjct: 66 GPEGPPGPRGQK----GDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGI 121
Query: 317 GGPGGGAGVRSYPVIPVPSKGFGLLQKLP-PPLFPHPYGFPTAFGLCPKKDDPVLGAGEP 375
G G G R +P P GF LQ P PP P G P + + P G P
Sbjct: 122 PGCNGTKGERGFPGSP----GFPGLQGPPGPPGIPGMKGEPGSI-IMSSLPGPKGNPGYP 176
Query: 376 KGGPGTGSGGGGAGTGGGAGGPGASHL--PPGAGAGPG 411
G PG G G G G PG L PPG PG
Sbjct: 177 -GPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPG 213
Score = 50.8 bits (120), Expect = 6e-06
Identities = 122/491 (24%), Positives = 148/491 (30%), Gaps = 90/491 (18%)
Query: 274 PGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSYPVIP- 332
PGPP K G G PG P +G G GP G GP G +GV P P
Sbjct: 1002 PGPPGPK----GNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPG 1057
Query: 333 VPS----KGFGLLQKLPPPLFPHPYG------FPTAFGLCPKKDDPVL-------GAGEP 375
+P KG + + P P P G +P G+ DP L GA
Sbjct: 1058 LPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQ 1117
Query: 376 KGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAA 435
G PG G G G +G PG LP G GGG P K
Sbjct: 1118 PGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGP 1177
Query: 436 AAATVYPTFPMFW-PAAGSLP-------------VPSYPAAQSQAKAVAAAVAAAAAAAA 481
A P P F P LP +P P
Sbjct: 1178 AGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPP 1237
Query: 482 AAAGSGAPEPLDGAE-------PAKESGLGAEERCPSALSRGPLDEDGTDEALP--PPLA 532
GS P L+G + P GL E P G + + + P P L
Sbjct: 1238 GPPGSPGP-ALEGPKGNPGPQGPPGRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLP 1296
Query: 533 PLPPPPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGA--GSGGYV 590
L PP +G + RP + + L G GP+ PG G G +
Sbjct: 1297 GLKGDQGPPGLQG---NPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLI 1353
Query: 591 SPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGG--GPDGE 648
P P + + ++ DA P P G GP G
Sbjct: 1354 GP-----------PGPPGLPGPSGQSIIIKG-------DAGPPGIPGQPGLKGLPGPQGP 1395
Query: 649 Q----PTGPPSATS-------SGADGPANSPD-GGSPRPRRRLGPP-------PAGRPAF 689
Q PTGPP GA G P G P R GPP P G P
Sbjct: 1396 QGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGPPGT 1455
Query: 690 GDLAAEDLVRR 700
+A L+ R
Sbjct: 1456 SSVAHGFLITR 1466
Score = 48.1 bits (113), Expect = 4e-05
Identities = 134/522 (25%), Positives = 166/522 (31%), Gaps = 100/522 (19%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGP--------------PPPHPQR-GLGLATGASGP 313
G+ APG P G+D G PGP PP +P GL G GP
Sbjct: 564 GSPGAPGLPGLPGTP-GQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGP 622
Query: 314 AGPGGPG--------GGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKK 365
G G PG G AG P IP P G Q + P P G P G
Sbjct: 623 PGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPG--QTITQPGKPGLPGNPGRDGDVGLP 680
Query: 366 DDPVLGAGEP--------KGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFW 417
DP L G+P KG PG G G G G G PG PPGA PG +
Sbjct: 681 GDPGL-PGQPGLPGIPGSKGEPGI-PGIGLPGPPGPKGFPGIPG-PPGAPGTPGRIGLEG 737
Query: 418 GHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAG-----SLPVPSYPAAQSQAKAVAAA 472
P G A P P F A G P P P ++
Sbjct: 738 PPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRT-------G 790
Query: 473 VAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEERCPSALSRGPLDEDGTDEALP---- 528
+ +G P P+ P G+G + GP+ + G +P
Sbjct: 791 LDGLPGPKGDVGPNGQPGPMG---PPGLPGIGVQGPPGPPGIPGPIGQPGL-HGIPGEKG 846
Query: 529 ---PPLAPLPPPPPP------PARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARG 579
PP +P PP P G P + + G+ E GP
Sbjct: 847 DPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGP 906
Query: 580 PGP-----GAGSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDD--EDAQE 632
PGP +G G D L +G + + + EP + + E
Sbjct: 907 PGPLGIPGRSGVPGLKGDDGL-QGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGE 965
Query: 633 ETEPSAPSAGG--GPDGEQPTGPPSATSSGADGPANSPDGGSPRPRRRLGPPPAGRPAFG 690
+ EP P G GP G Q G P G G + P G P P P P G P
Sbjct: 966 KGEPGLPGIPGVSGPKGYQ--GLPG--DPGQPGLSGQP--GLPGP-----PGPKGNPG-- 1012
Query: 691 DLAAEDLVRRPERSPPSGGGGYELREPCGPLGGPAPAKVFAP 732
L +P P G L+ G +G P P V P
Sbjct: 1013 ------LPGQPGLIGPPG-----LKGTIGDMGFPGPQGVEGP 1043
Score = 45.4 bits (106), Expect = 2e-04
Identities = 49/148 (33%), Positives = 60/148 (40%), Gaps = 15/148 (10%)
Query: 269 GAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGAGVRSY 328
G + PG P ++ G+ G PG P G+ +G G AGP G G G
Sbjct: 1306 GLQGNPGRPGLNGMK-GDPGLPGVPGFP------GMKGPSGVPGSAGPEGEPGLIGPPGP 1358
Query: 329 PVIPVPSKGFGLLQK--LPPPLFPHPYGFPTAFGL-CPKKDDPVLGAGEPKGGPGTGSGG 385
P +P PS G ++ K PP P G P GL P+ + G P G PG
Sbjct: 1359 PGLPGPS-GQSIIIKGDAGPPGIP---GQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLP 1414
Query: 386 GGAGTGGGAGGPGASHLPPGAGA-GPGG 412
G G GG G PG P G GP G
Sbjct: 1415 GFDGAGGRKGDPGLPGQPGTRGLDGPPG 1442
Score = 41.2 bits (95), Expect = 0.004
Identities = 41/111 (36%), Positives = 44/111 (39%), Gaps = 13/111 (11%)
Query: 303 GLGLATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGL- 361
GL G G GP GP G G + IP P G+ PP P GFP GL
Sbjct: 54 GLEGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGI---RGPPGLP---GFPGTPGLP 107
Query: 362 -CPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAGPG 411
P D GA P+G PG G G G G PG PPG PG
Sbjct: 108 GMPGHD----GAPGPQGIPGCNGTKGERGFPGSPGFPGLQG-PPGPPGIPG 153
Score = 41.2 bits (95), Expect = 0.004
Identities = 54/153 (35%), Positives = 62/153 (40%), Gaps = 15/153 (9%)
Query: 263 NGGTRCGAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASG-PAGPGGPG- 320
NGG + G + PG P L G GPPG + GL G G P PG PG
Sbjct: 1277 NGGIK-GEKGNPGQPGLPGLP-GLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGM 1334
Query: 321 -GGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLG-AGEP--K 376
G +GV P P GL+ PP P P G + K D G G+P K
Sbjct: 1335 KGPSGV---PGSAGPEGEPGLIGPPGPPGLPGPSG----QSIIIKGDAGPPGIPGQPGLK 1387
Query: 377 GGPGTGSGGGGAGTGGGAGGPGASHLPPGAGAG 409
G PG G G G G PG + LP GAG
Sbjct: 1388 GLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAG 1420
Score = 39.3 bits (90), Expect = 0.017
Identities = 52/151 (34%), Positives = 56/151 (37%), Gaps = 27/151 (17%)
Query: 269 GAEMAPGPP--PHKSLRC-----GEDEAAGPPGPPPPHPQRGLGLATGASGPAG-PGGPG 320
G + PGPP P +L G G PG P P GL G G G PG PG
Sbjct: 1232 GVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGLPGPEGPPGLPGNGGIKGEKGNPGQPG 1291
Query: 321 GGAGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYGFPTAFGLCPKKDDPVLGAGEPKGGPG 380
P +P GL PP G P GL K DP L G P G PG
Sbjct: 1292 -------LPGLP------GLKGDQGPPGL---QGNPGRPGLNGMKGDPGL-PGVP-GFPG 1333
Query: 381 TGSGGGGAGTGGGAGGPGASHLPPGAGAGPG 411
G G+ G G PG PPG PG
Sbjct: 1334 MKGPSGVPGSAGPEGEPGLIG-PPGPPGLPG 1363
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.133 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,329,359
Number of Sequences: 37866
Number of extensions: 3867825
Number of successful extensions: 74851
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 1875
Number of HSP's that attempted gapping in prelim test: 25937
Number of HSP's gapped (non-prelim): 22952
length of query: 921
length of database: 18,247,518
effective HSP length: 112
effective length of query: 809
effective length of database: 14,006,526
effective search space: 11331279534
effective search space used: 11331279534
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.