Guide to the Human Genome
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Name: SKIL Sequence: fasta or formatted (664aa) NCBI GI: 223029422
Description:

SKI-like isoform 3

Referenced in:

TGF-beta Family

Other entries for this name:
alt prot [684aa] SKI-like isoform 1
alt prot [638aa] SKI-like isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         35           3
 C cysteine            3.3         22           2
 D aspartate           4.2         28           2
 E glutamate           9.2         61           2
 F phenylalanine       2.4         16           1
 G glycine             4.2         28           2
 H histidine           3.0         20           1
 I isoleucine          3.6         24           2
 K lysine              9.0         60           2
 L leucine            11.3         75           2
 M methionine          2.9         19           2
 N asparagine          2.9         19           2
 P proline             4.8         32           2
 Q glutamine           7.2         48           2
 R arginine            3.8         25           1
 S serine              9.9         66           3
 T threonine           5.3         35           1
 V valine              5.1         34           2
 W tryptophan          0.5          3           1
 Y tyrosine            2.1         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SKI-like isoform 3 
SKIL                  1.000   SKI-like isoform 1 
SKIL                  0.914   SKI-like isoform 2 
SKI                   0.308   v-ski sarcoma viral oncogene homolog 
FUSSEL18              0.074   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.074   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.074   PREDICTED: functional smad suppressing element 18 [...
LBXCOR1               0.065   LBXCOR1 homolog 
MYH10                 0.027   myosin, heavy polypeptide 10, non-muscle 
CCDC88A               0.026   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.026   coiled-coil domain containing 88A isoform 1 
PLEC1                 0.025   plectin 1 isoform 11 
PLEC1                 0.025   plectin 1 isoform 10 
PLEC1                 0.025   plectin 1 isoform 8 
PLEC1                 0.025   plectin 1 isoform 7 
PLEC1                 0.025   plectin 1 isoform 6 
PLEC1                 0.025   plectin 1 isoform 3 
PLEC1                 0.025   plectin 1 isoform 2 
PLEC1                 0.025   plectin 1 isoform 1 
CEP250                0.024   centrosomal protein 2 
TPM1                  0.023   tropomyosin 1 alpha chain isoform 2 
ROCK2                 0.023   Rho-associated, coiled-coil containing protein kinas...
TCHH                  0.022   trichohyalin 
CGNL1                 0.022   cingulin-like 1 
GOLGB1                0.022   golgi autoantigen, golgin subfamily b, macrogolgin ...
LOC645202             0.022   PREDICTED: hypothetical protein LOC645202 
NUMA1                 0.022   nuclear mitotic apparatus protein 1 
LOC727832             0.022   golgi autoantigen, golgin subfamily a-like 
AKAP9                 0.022   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.022   A-kinase anchor protein 9 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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