Guide to the Human Genome
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Name: FUSSEL18 Sequence: fasta or formatted (1252aa) NCBI GI: 239746067
Description:

PREDICTED: functional smad suppressing element 18

Referenced in:

TGF-beta Family

Other entries for this name:
alt mRNA [1252aa] PREDICTED: functional smad suppressing element 18
alt prot [996aa] PREDICTED: functional smad suppressing element 18
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7        134           5
 C cysteine            2.2         27           2
 D aspartate           4.9         61           5
 E glutamate           5.5         69           5
 F phenylalanine       3.8         48           3
 G glycine            10.5        131           4
 H histidine           4.5         56           8
 I isoleucine          2.0         25           1
 K lysine              4.5         56           2
 L leucine             8.5        107           4
 M methionine          1.0         13           1
 N asparagine          2.6         32           2
 P proline            12.1        152          12
 Q glutamine           4.2         52           2
 R arginine            4.5         56           3
 S serine              8.9        111           3
 T threonine           2.6         33           2
 V valine              4.7         59           2
 W tryptophan          0.8         10           1
 Y tyrosine            1.6         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: functional smad suppressing element 18 [... 
FUSSEL18              1.000   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.776   PREDICTED: functional smad suppressing element 18 [...
LBXCOR1               0.168   LBXCOR1 homolog 
SKI                   0.041   v-ski sarcoma viral oncogene homolog 
SKIL                  0.037   SKI-like isoform 3 
SKIL                  0.037   SKI-like isoform 2 
SKIL                  0.037   SKI-like isoform 1 
ARID1A                0.029   AT rich interactive domain 1A isoform a 
ARID1A                0.029   AT rich interactive domain 1A isoform b 
WIPF1                 0.026   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.026   WAS/WASL interacting protein family, member 1 
ZIC5                  0.024   zinc finger protein of the cerebellum 5 
GATA6                 0.024   GATA binding protein 6 
C10orf140             0.022   hypothetical protein LOC387640 
PELP1                 0.021   proline, glutamic acid and leucine rich protein 1 [...
FOXB2                 0.021   forkhead box B2 
FOXG1                 0.021   forkhead box G1 
POU3F3                0.021   POU class 3 homeobox 3 
COL1A1                0.020   alpha 1 type I collagen preproprotein 
ARID1B                0.020   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
COL1A2                0.020   alpha 2 type I collagen 
ARID1B                0.019   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.019   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
ONECUT3               0.019   one cut homeobox 3 
TAF4                  0.019   TBP-associated factor 4 
SHANK1                0.019   SH3 and multiple ankyrin repeat domains 1 
COL2A1                0.018   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.018   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL3A1                0.017   collagen type III alpha 1 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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