Guide to the Human Genome
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Name: SKIL Sequence: fasta or formatted (638aa) NCBI GI: 223029420
Description:

SKI-like isoform 2

Referenced in:

TGF-beta Family

Other entries for this name:
alt prot [684aa] SKI-like isoform 1
alt prot [664aa] SKI-like isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         34           3
 C cysteine            3.3         21           2
 D aspartate           3.9         25           2
 E glutamate           8.9         57           2
 F phenylalanine       2.7         17           1
 G glycine             4.5         29           2
 H histidine           3.0         19           1
 I isoleucine          3.6         23           2
 K lysine              8.8         56           2
 L leucine            11.4         73           2
 M methionine          3.0         19           2
 N asparagine          3.6         23           2
 P proline             4.9         31           2
 Q glutamine           7.4         47           2
 R arginine            3.4         22           1
 S serine              9.1         58           3
 T threonine           5.5         35           1
 V valine              5.2         33           2
 W tryptophan          0.5          3           1
 Y tyrosine            2.0         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SKI-like isoform 2 
SKIL                  0.981   SKI-like isoform 1 
SKIL                  0.951   SKI-like isoform 3 
SKI                   0.273   v-ski sarcoma viral oncogene homolog 
FUSSEL18              0.077   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.077   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.077   PREDICTED: functional smad suppressing element 18 [...
LBXCOR1               0.067   LBXCOR1 homolog 
MYH6                  0.026   myosin heavy chain 6 
CEP250                0.024   centrosomal protein 2 
MYH10                 0.024   myosin, heavy polypeptide 10, non-muscle 
TCHH                  0.023   trichohyalin 
GOLGB1                0.023   golgi autoantigen, golgin subfamily b, macrogolgin ...
ROCK2                 0.023   Rho-associated, coiled-coil containing protein kinas...
MYH7                  0.022   myosin, heavy chain 7, cardiac muscle, beta 
LOC283767             0.022   golgi autoantigen, golgin subfamily a-like 
LOC645202             0.022   PREDICTED: hypothetical protein LOC645202 
CTAGE5                0.022   CTAGE family, member 5 isoform 3 
CTAGE5                0.022   CTAGE family, member 5 isoform 1 
CTAGE5                0.022   CTAGE family, member 5 isoform 4 
CTAGE5                0.022   CTAGE family, member 5 isoform 2 
LOC727832             0.022   golgi autoantigen, golgin subfamily a-like 
LOC440243             0.022   PREDICTED: Putative golgin subfamily A member 6-lik...
PMFBP1                0.022   polyamine modulated factor 1 binding protein 1 isof...
PMFBP1                0.022   polyamine modulated factor 1 binding protein 1 isof...
NUMA1                 0.022   nuclear mitotic apparatus protein 1 
ITSN2                 0.022   intersectin 2 isoform 3 
ITSN2                 0.022   intersectin 2 isoform 1 
ITSN2                 0.022   intersectin 2 isoform 2 
ZNF853                0.021   zinc finger protein 853 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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