Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FUSSEL18 Sequence: fasta or formatted (996aa) NCBI GI: 239757043
Description:

PREDICTED: functional smad suppressing element 18

Referenced in:

TGF-beta Family

Other entries for this name:
alt prot [1252aa] PREDICTED: functional smad suppressing element 18
alt prot [1252aa] PREDICTED: functional smad suppressing element 18
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8        118           5
 C cysteine            1.9         19           1
 D aspartate           5.0         50           5
 E glutamate           5.7         57           5
 F phenylalanine       3.6         36           2
 G glycine            11.6        116           4
 H histidine           4.6         46           8
 I isoleucine          2.3         23           1
 K lysine              4.5         45           2
 L leucine             7.7         77           4
 M methionine          0.7          7           1
 N asparagine          2.4         24           2
 P proline            13.2        131          12
 Q glutamine           3.4         34           1
 R arginine            4.2         42           3
 S serine              8.7         87           3
 T threonine           2.3         23           1
 V valine              4.1         41           2
 W tryptophan          0.7          7           1
 Y tyrosine            1.3         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: functional smad suppressing element 18 [... 
FUSSEL18              0.975   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.975   PREDICTED: functional smad suppressing element 18 [...
LBXCOR1               0.210   LBXCOR1 homolog 
SKI                   0.052   v-ski sarcoma viral oncogene homolog 
SKIL                  0.047   SKI-like isoform 3 
SKIL                  0.047   SKI-like isoform 2 
SKIL                  0.047   SKI-like isoform 1 
ARID1A                0.036   AT rich interactive domain 1A isoform a 
ARID1A                0.036   AT rich interactive domain 1A isoform b 
WIPF1                 0.033   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.033   WAS/WASL interacting protein family, member 1 
ZIC5                  0.030   zinc finger protein of the cerebellum 5 
GATA6                 0.030   GATA binding protein 6 
C10orf140             0.029   hypothetical protein LOC387640 
COL1A1                0.028   alpha 1 type I collagen preproprotein 
PELP1                 0.027   proline, glutamic acid and leucine rich protein 1 [...
POU3F3                0.027   POU class 3 homeobox 3 
FOXB2                 0.026   forkhead box B2 
FOXG1                 0.026   forkhead box G1 
ARID1B                0.025   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.025   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
ARID1B                0.025   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
COL1A2                0.025   alpha 2 type I collagen 
ONECUT3               0.024   one cut homeobox 3 
SHANK1                0.024   SH3 and multiple ankyrin repeat domains 1 
TAF4                  0.024   TBP-associated factor 4 
COL2A1                0.023   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.023   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL3A1                0.022   collagen type III alpha 1 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press