Guide to the Human Genome
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Name: ATN1 Sequence: fasta or formatted (1190aa) NCBI GI: 55750041
Description:

atrophin-1

Referenced in:

PDZ Domain

Other entries for this name:
alt mRNA [1190aa] atrophin-1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1        108           3
 C cysteine            0.3          3           1
 D aspartate           2.6         31           2
 E glutamate           5.4         64           2
 F phenylalanine       1.8         22           1
 G glycine             8.2         97           3
 H histidine           4.9         58           5
 I isoleucine          0.8         10           1
 K lysine              3.3         39           2
 L leucine             7.4         88           2
 M methionine          1.3         15           1
 N asparagine          2.3         27           2
 P proline            18.7        223           6
 Q glutamine           5.4         64          19
 R arginine            5.5         65           2
 S serine             12.9        153          10
 T threonine           4.0         48           2
 V valine              3.6         43           2
 W tryptophan          0.2          2           1
 Y tyrosine            2.5         30           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   atrophin-1 
ATN1                  1.000   atrophin-1 
RERE                  0.279   atrophin-1 like protein isoform b 
RERE                  0.279   atrophin-1 like protein isoform a 
RERE                  0.279   atrophin-1 like protein isoform a 
NACA                  0.056   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.053   PREDICTED: hypothetical protein FLJ22184 
KDM6B                 0.042   lysine (K)-specific demethylase 6B 
FLJ22184              0.041   PREDICTED: hypothetical protein LOC80164 
FMN2                  0.040   formin 2 
FLJ22184              0.039   PREDICTED: hypothetical protein FLJ22184 
POLR2A                0.038   DNA-directed RNA polymerase II A 
RAPH1                 0.038   Ras association and pleckstrin homology domains 1 is...
PRG4                  0.037   proteoglycan 4 isoform D 
PRG4                  0.037   proteoglycan 4 isoform C 
PRG4                  0.037   proteoglycan 4 isoform B 
PRG4                  0.037   proteoglycan 4 isoform A 
MBD6                  0.037   methyl-CpG binding domain protein 6 
MLL2                  0.037   myeloid/lymphoid or mixed-lineage leukemia 2 
PRB2                  0.036   proline-rich protein BstNI subfamily 2 
BRD4                  0.035   bromodomain-containing protein 4 isoform long 
PCLO                  0.034   piccolo isoform 2 
PCLO                  0.034   piccolo isoform 1 
ARID1B                0.033   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
GLTSCR1               0.031   glioma tumor suppressor candidate region gene 1 [Ho...
ARID1B                0.031   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
BAT2                  0.031   HLA-B associated transcript-2 
CIC                   0.031   capicua homolog 
ARID1A                0.031   AT rich interactive domain 1A isoform a 
ARID1A                0.031   AT rich interactive domain 1A isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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