ATN1 32882

Name: ATN1	Sequence: fasta or formatted (1190aa)		NCBI GI: 55750053
Description: atrophin-1		Referenced in: PDZ Domain
Other entries for this name: alt mRNA [1190aa] atrophin-1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.1 108 3 C cysteine 0.3 3 1 D aspartate 2.6 31 2 E glutamate 5.4 64 2 F phenylalanine 1.8 22 1 G glycine 8.2 97 3 H histidine 4.9 58 5 I isoleucine 0.8 10 1 K lysine 3.3 39 2 L leucine 7.4 88 2 M methionine 1.3 15 1 N asparagine 2.3 27 2 P proline 18.7 223 6 Q glutamine 5.4 64 19 R arginine 5.5 65 2 S serine 12.9 153 10 T threonine 4.0 48 2 V valine 3.6 43 2 W tryptophan 0.2 2 1 Y tyrosine 2.5 30 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 atrophin-1 ATN1 1.000 atrophin-1 RERE 0.279 atrophin-1 like protein isoform b RERE 0.279 atrophin-1 like protein isoform a RERE 0.279 atrophin-1 like protein isoform a NACA 0.056 nascent polypeptide-associated complex alpha subuni... FLJ22184 0.053 PREDICTED: hypothetical protein FLJ22184 KDM6B 0.042 lysine (K)-specific demethylase 6B FLJ22184 0.041 PREDICTED: hypothetical protein LOC80164 FMN2 0.040 formin 2 FLJ22184 0.039 PREDICTED: hypothetical protein FLJ22184 POLR2A 0.038 DNA-directed RNA polymerase II A RAPH1 0.038 Ras association and pleckstrin homology domains 1 is... PRG4 0.037 proteoglycan 4 isoform D PRG4 0.037 proteoglycan 4 isoform C PRG4 0.037 proteoglycan 4 isoform B PRG4 0.037 proteoglycan 4 isoform A MBD6 0.037 methyl-CpG binding domain protein 6 MLL2 0.037 myeloid/lymphoid or mixed-lineage leukemia 2 PRB2 0.036 proline-rich protein BstNI subfamily 2 BRD4 0.035 bromodomain-containing protein 4 isoform long PCLO 0.034 piccolo isoform 2 PCLO 0.034 piccolo isoform 1 ARID1B 0.033 AT rich interactive domain 1B (SWI1-like) isoform 1 ... GLTSCR1 0.031 glioma tumor suppressor candidate region gene 1 [Ho... ARID1B 0.031 AT rich interactive domain 1B (SWI1-like) isoform 3 ... BAT2 0.031 HLA-B associated transcript-2 CIC 0.031 capicua homolog ARID1A 0.031 AT rich interactive domain 1A isoform a ARID1A 0.031 AT rich interactive domain 1A isoform b Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.