Guide to the Human Genome
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Name: LBXCOR1 Sequence: fasta or formatted (921aa) NCBI GI: 73476377
Description:

LBXCOR1 homolog

Referenced in:

TGF-beta Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.9        110          11
 C cysteine            2.2         20           1
 D aspartate           4.8         44           2
 E glutamate           6.7         62           2
 F phenylalanine       2.7         25           1
 G glycine            11.9        110           4
 H histidine           2.2         20           2
 I isoleucine          2.1         19           1
 K lysine              4.5         41           2
 L leucine             7.7         71           3
 M methionine          1.4         13           1
 N asparagine          2.4         22           1
 P proline            11.9        110           7
 Q glutamine           3.4         31           2
 R arginine            5.4         50           3
 S serine              8.1         75           3
 T threonine           3.6         33           2
 V valine              4.0         37           2
 W tryptophan          0.7          6           1
 Y tyrosine            2.4         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   LBXCOR1 homolog 
FUSSEL18              0.272   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.272   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.272   PREDICTED: functional smad suppressing element 18 [...
SKI                   0.053   v-ski sarcoma viral oncogene homolog 
SKIL                  0.045   SKI-like isoform 3 
SKIL                  0.045   SKI-like isoform 2 
SKIL                  0.045   SKI-like isoform 1 
COL1A1                0.037   alpha 1 type I collagen preproprotein 
ATN1                  0.032   atrophin-1 
ATN1                  0.032   atrophin-1 
COL2A1                0.031   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.031   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL3A1                0.031   collagen type III alpha 1 preproprotein 
COL1A2                0.031   alpha 2 type I collagen 
ZIC5                  0.030   zinc finger protein of the cerebellum 5 
COL11A2               0.030   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.030   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.030   collagen, type XI, alpha 2 isoform 1 preproprotein ...
NACA                  0.029   nascent polypeptide-associated complex alpha subuni...
COL9A2                0.029   alpha 2 type IX collagen 
COL5A1                0.029   alpha 1 type V collagen preproprotein 
ARID1B                0.028   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.028   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
TAF4                  0.028   TBP-associated factor 4 
COL11A1               0.026   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.026   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.026   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL4A5                0.026   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.026   type IV collagen alpha 5 isoform 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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