Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 57222570
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|57222570 codanin 1 [Homo sapiens]
(1227 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|57222570 codanin 1 [Homo sapiens] 2448 0.0
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 55 4e-07
gi|110832843 TBP-associated factor 4 [Homo sapiens] 55 4e-07
gi|163965366 nascent polypeptide-associated complex alpha subuni... 54 9e-07
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 54 1e-06
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 53 2e-06
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 53 2e-06
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 51 6e-06
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 51 6e-06
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 50 1e-05
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 50 1e-05
gi|154146199 sal-like 3 [Homo sapiens] 50 1e-05
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 50 2e-05
gi|237757308 synaptojanin 1 isoform b [Homo sapiens] 49 3e-05
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 49 3e-05
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 49 3e-05
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 49 3e-05
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 49 4e-05
gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens] 49 4e-05
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 49 4e-05
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 48 5e-05
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 48 5e-05
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 48 5e-05
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 48 5e-05
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 47 9e-05
gi|150418009 transforming, acidic coiled-coil containing protein... 47 1e-04
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 47 1e-04
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 47 1e-04
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 46 2e-04
gi|153792780 additional sex combs like 2 [Homo sapiens] 46 2e-04
>gi|57222570 codanin 1 [Homo sapiens]
Length = 1227
Score = 2448 bits (6345), Expect = 0.0
Identities = 1227/1227 (100%), Positives = 1227/1227 (100%)
Query: 1 MAAVLESLLREEVSVAAVVRWIARSTQGSEDNAGEAAALSSLRALRKEFVPFLLNFLREQ 60
MAAVLESLLREEVSVAAVVRWIARSTQGSEDNAGEAAALSSLRALRKEFVPFLLNFLREQ
Sbjct: 1 MAAVLESLLREEVSVAAVVRWIARSTQGSEDNAGEAAALSSLRALRKEFVPFLLNFLREQ 60
Query: 61 SSRVLPQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGG 120
SSRVLPQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGG
Sbjct: 61 SSRVLPQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGG 120
Query: 121 RRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPP 180
RRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPP
Sbjct: 121 RRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPP 180
Query: 181 VGSVPPGPTGTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPSALDTSPWGLGL 240
VGSVPPGPTGTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPSALDTSPWGLGL
Sbjct: 181 VGSVPPGPTGTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPSALDTSPWGLGL 240
Query: 241 PPGCRSLQEEREMLRKERSKQLQQSPTPTCPTPELGSPLPSRTGSLTDEPADPARVSSRQ 300
PPGCRSLQEEREMLRKERSKQLQQSPTPTCPTPELGSPLPSRTGSLTDEPADPARVSSRQ
Sbjct: 241 PPGCRSLQEEREMLRKERSKQLQQSPTPTCPTPELGSPLPSRTGSLTDEPADPARVSSRQ 300
Query: 301 RLELVALVYSSCIAENLVPNLFLELFFVFQLLTARRMVTAKDSDPELSPAVLDSLESPLF 360
RLELVALVYSSCIAENLVPNLFLELFFVFQLLTARRMVTAKDSDPELSPAVLDSLESPLF
Sbjct: 301 RLELVALVYSSCIAENLVPNLFLELFFVFQLLTARRMVTAKDSDPELSPAVLDSLESPLF 360
Query: 361 QSIHDCVFFAVQVLECHFQVLSNLDKGTLKLLAENERLLCFSPALQGRLRAAYEGSVAKV 420
QSIHDCVFFAVQVLECHFQVLSNLDKGTLKLLAENERLLCFSPALQGRLRAAYEGSVAKV
Sbjct: 361 QSIHDCVFFAVQVLECHFQVLSNLDKGTLKLLAENERLLCFSPALQGRLRAAYEGSVAKV 420
Query: 421 SLVMPPSTQAVSFQPETDNRANFSSDRAFHTFKKQRDVFYEVLREWEDHHEEPGWDFEKG 480
SLVMPPSTQAVSFQPETDNRANFSSDRAFHTFKKQRDVFYEVLREWEDHHEEPGWDFEKG
Sbjct: 421 SLVMPPSTQAVSFQPETDNRANFSSDRAFHTFKKQRDVFYEVLREWEDHHEEPGWDFEKG 480
Query: 481 LGSRIRAMMGQLSAACSHSHFVRLFQKQLLQMCQSPGGAGGTVLGEAPDVLSMLGADKLG 540
LGSRIRAMMGQLSAACSHSHFVRLFQKQLLQMCQSPGGAGGTVLGEAPDVLSMLGADKLG
Sbjct: 481 LGSRIRAMMGQLSAACSHSHFVRLFQKQLLQMCQSPGGAGGTVLGEAPDVLSMLGADKLG 540
Query: 541 RLWRLQERLMAPQSSGGPCPPPTFPGCQGFFRDFILSASSFQFNQHLMDSLSLKIQELNG 600
RLWRLQERLMAPQSSGGPCPPPTFPGCQGFFRDFILSASSFQFNQHLMDSLSLKIQELNG
Sbjct: 541 RLWRLQERLMAPQSSGGPCPPPTFPGCQGFFRDFILSASSFQFNQHLMDSLSLKIQELNG 600
Query: 601 LALPQHEPNDEDGESDVDWQGERKQFAVVLLSLRLLAKFLGFVAFLPYRGPEPPPTGELQ 660
LALPQHEPNDEDGESDVDWQGERKQFAVVLLSLRLLAKFLGFVAFLPYRGPEPPPTGELQ
Sbjct: 601 LALPQHEPNDEDGESDVDWQGERKQFAVVLLSLRLLAKFLGFVAFLPYRGPEPPPTGELQ 660
Query: 661 DSILALRSQVPPVLDVRTLLQRGLQARRAVLTVPWLVEFLSFADHVVPLLEYYRDIFTLL 720
DSILALRSQVPPVLDVRTLLQRGLQARRAVLTVPWLVEFLSFADHVVPLLEYYRDIFTLL
Sbjct: 661 DSILALRSQVPPVLDVRTLLQRGLQARRAVLTVPWLVEFLSFADHVVPLLEYYRDIFTLL 720
Query: 721 LRLHRSLVLSQESEGKMCFLNKLLLLAVLGWLFQIPTVPEDLFFLEEGPSYAFEVDTVAP 780
LRLHRSLVLSQESEGKMCFLNKLLLLAVLGWLFQIPTVPEDLFFLEEGPSYAFEVDTVAP
Sbjct: 721 LRLHRSLVLSQESEGKMCFLNKLLLLAVLGWLFQIPTVPEDLFFLEEGPSYAFEVDTVAP 780
Query: 781 EHGLDNAPVVDQQLLYTCCPYIGELRKLLASWVSGSSGRSGGFMRKITPTTTTSLGAQPS 840
EHGLDNAPVVDQQLLYTCCPYIGELRKLLASWVSGSSGRSGGFMRKITPTTTTSLGAQPS
Sbjct: 781 EHGLDNAPVVDQQLLYTCCPYIGELRKLLASWVSGSSGRSGGFMRKITPTTTTSLGAQPS 840
Query: 841 QTSQGLQAQLAQAFFHNQPPSLRRTVEFVAERIGSNCVKHIKATLVADLVRQAESLLQEQ 900
QTSQGLQAQLAQAFFHNQPPSLRRTVEFVAERIGSNCVKHIKATLVADLVRQAESLLQEQ
Sbjct: 841 QTSQGLQAQLAQAFFHNQPPSLRRTVEFVAERIGSNCVKHIKATLVADLVRQAESLLQEQ 900
Query: 901 LVTQGEEGGDPAQLLEILCSQLCPHGAQALALGREFCQRKSPGAVRALLPEETPAAVLSS 960
LVTQGEEGGDPAQLLEILCSQLCPHGAQALALGREFCQRKSPGAVRALLPEETPAAVLSS
Sbjct: 901 LVTQGEEGGDPAQLLEILCSQLCPHGAQALALGREFCQRKSPGAVRALLPEETPAAVLSS 960
Query: 961 AENIAVGLATEKACAWLSANITALIRREVKAAVSRTLRAQGPEPAARGERRGCSRACEHH 1020
AENIAVGLATEKACAWLSANITALIRREVKAAVSRTLRAQGPEPAARGERRGCSRACEHH
Sbjct: 961 AENIAVGLATEKACAWLSANITALIRREVKAAVSRTLRAQGPEPAARGERRGCSRACEHH 1020
Query: 1021 APLPSHLISEIKDVLSLAVGPRDPDEGVSPEHLEQLLGQLGQTLRCRQFLCPPAEQHLAK 1080
APLPSHLISEIKDVLSLAVGPRDPDEGVSPEHLEQLLGQLGQTLRCRQFLCPPAEQHLAK
Sbjct: 1021 APLPSHLISEIKDVLSLAVGPRDPDEGVSPEHLEQLLGQLGQTLRCRQFLCPPAEQHLAK 1080
Query: 1081 CSVELASLLVADQIPILGPPAQYRLERGQARRLLHMLLSLWKEDFQGPVPLQLLLSPRNV 1140
CSVELASLLVADQIPILGPPAQYRLERGQARRLLHMLLSLWKEDFQGPVPLQLLLSPRNV
Sbjct: 1081 CSVELASLLVADQIPILGPPAQYRLERGQARRLLHMLLSLWKEDFQGPVPLQLLLSPRNV 1140
Query: 1141 GLLADTRPREWDLLLFLLRELVEKGLMGRMEIEACLGSLHQAQWPGDFAEELATLSNLFL 1200
GLLADTRPREWDLLLFLLRELVEKGLMGRMEIEACLGSLHQAQWPGDFAEELATLSNLFL
Sbjct: 1141 GLLADTRPREWDLLLFLLRELVEKGLMGRMEIEACLGSLHQAQWPGDFAEELATLSNLFL 1200
Query: 1201 AEPHLPEPQLRACELVQPNRGTVLAQS 1227
AEPHLPEPQLRACELVQPNRGTVLAQS
Sbjct: 1201 AEPHLPEPQLRACELVQPNRGTVLAQS 1227
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 55.1 bits (131), Expect = 4e-07
Identities = 64/197 (32%), Positives = 74/197 (37%), Gaps = 19/197 (9%)
Query: 66 PQGPPTPAKTPG--ASAALPGRPG-GPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGR- 121
P GPP PA PG PG PG PRGS G R + PP A A GG+
Sbjct: 766 PIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKG 825
Query: 122 -RRGPGPARERGGRGL--EEGVSGESLPGAGGRRLRGS-GSPSRPSLT-------LSDPP 170
R PG E G G+ G SG + P G + ++G GSP P L PP
Sbjct: 826 ERGAPGEKGEGGPPGVAGPPGGSGPAGP-PGPQGVKGERGSPGGPGAAGFPGARGLPGPP 884
Query: 171 NLSNLEEFPPVGSVPPGPTGTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPSA 230
SN PP S PG G P T +S PK P P +Q
Sbjct: 885 G-SNGNPGPPGPSGSPGKDG--PPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPP 941
Query: 231 LDTSPWGLGLPPGCRSL 247
P G+ G R L
Sbjct: 942 GAPGPLGIAGITGARGL 958
Score = 45.8 bits (107), Expect = 2e-04
Identities = 49/146 (33%), Positives = 59/146 (40%), Gaps = 25/146 (17%)
Query: 75 TPGASAALPGRPGGP----PRGSRGARSQLFPPTEAQSTAAEAPLARRG-----GRRRGP 125
+PGA A PG PG P P G G R + P A A P RG G R
Sbjct: 1039 SPGAPGA-PGHPGPPGPVGPAGKSGDRGESGP---AGPAGAPGPAGSRGAPGPQGPRGDK 1094
Query: 126 GPARERGGRGLE--EGVSGE-SLPG----AGGRRLRGSGSPSRP--SLTLSDPPNLSNLE 176
G ERG G++ G G PG AG + GS P+ P + S PP
Sbjct: 1095 GETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTS 1154
Query: 177 EFP-PVGSVPPGPTGTKPSRRINPTP 201
P P+G PPGP G + R +P
Sbjct: 1155 GHPGPIG--PPGPRGNRGERGSEGSP 1178
Score = 42.0 bits (97), Expect = 0.004
Identities = 42/144 (29%), Positives = 49/144 (34%), Gaps = 33/144 (22%)
Query: 66 PQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRGP 125
PQGPP P PG G PG P+G +G PP E G+ P
Sbjct: 616 PQGPPGPTG-PGGDKGDTGPPG--PQGLQGLPGTGGPPGE-------------NGKPGEP 659
Query: 126 GPARERGGRGLEEGVSGESLPG-------AGGRRLRGSGSPSRP--SLTLSDPPNLSNLE 176
GP + G G G PG AG LRG P P + PP
Sbjct: 660 GPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAA 719
Query: 177 EFPPVGSVP--------PGPTGTK 192
P + +P PGP G K
Sbjct: 720 GTPGLQGMPGERGGLGSPGPKGDK 743
Score = 41.6 bits (96), Expect = 0.005
Identities = 48/175 (27%), Positives = 63/175 (36%), Gaps = 19/175 (10%)
Query: 67 QGPPTPAKTPGA-----SAALPGRPG--GPPRGSRGARSQLFPPTEAQSTAAEAPLARRG 119
+GPP PA GA A PG+ G G P G RG R + P + + G
Sbjct: 413 RGPPGPAGANGAPGLRGGAGEPGKNGAKGEP-GPRGERGEAGIPGVPGAKGEDGKDGSPG 471
Query: 120 --GRRRGPGPARERGGRGLEEGVSGESLPG-AGGRRLRGSGSPSRPSLTLSDPPNLSNLE 176
G PG A ERG G +PG G RG+ P+ P + P +
Sbjct: 472 EPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGE-PGRDGVP 530
Query: 177 EFPPVGSVPPGPTGTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPSAL 231
P + +P P G P P P + +P PP P QP +
Sbjct: 531 GGPGMRGMPGSPGG--PGSDGKPGPPGSQGESGRP-----GPPGPSGPRGQPGVM 578
Score = 41.6 bits (96), Expect = 0.005
Identities = 50/162 (30%), Positives = 58/162 (35%), Gaps = 42/162 (25%)
Query: 66 PQGPPTPAKTPGASAALP---------------GRPGGP-------PRGSRGARSQLFPP 103
P GPP A TPG +P G PGGP G RG + PP
Sbjct: 712 PPGPPGAAGTPGLQ-GMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPP 770
Query: 104 TEAQSTAAEAPLARRGGRRRGPGPARERGGRGLEEGVSG----ESLPGAGGRRLRGSGSP 159
A + GG PG A RG G E G +G PGA G+ G
Sbjct: 771 GPAGQPGDKG----EGGAPGLPGIAGPRGSPG-ERGETGPPGPAGFPGAPGQNGEPGGKG 825
Query: 160 SRPS---LTLSDPPNLSNLEEFPPVGS---VPPGPTGTKPSR 195
R + PP ++ PP GS PPGP G K R
Sbjct: 826 ERGAPGEKGEGGPPGVAG----PPGGSGPAGPPGPQGVKGER 863
Score = 41.2 bits (95), Expect = 0.006
Identities = 43/141 (30%), Positives = 52/141 (36%), Gaps = 11/141 (7%)
Query: 66 PQGPPTPAKTPGASAALPGRPGGP----PRGSRGARSQLFPPTEAQSTAAEAPLARRGGR 121
P GPP P PG S PG PG P P G G PP + P + G
Sbjct: 175 PAGPPGPPGPPGTSGH-PGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGES 233
Query: 122 RRGPGPARERGGRGLEEGVSGES-LPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPP 180
R PG ERG G G+ G + +PG G + + P L E P
Sbjct: 234 GR-PGRPGERGLPG-PPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKG-ENGLP 290
Query: 181 VGSVPPGPTGTK--PSRRINP 199
+ PGP G + P R P
Sbjct: 291 GENGAPGPMGPRGAPGERGRP 311
Score = 40.4 bits (93), Expect = 0.010
Identities = 44/140 (31%), Positives = 57/140 (40%), Gaps = 18/140 (12%)
Query: 67 QGPPTPAKTPGASAALPGRPGGP-PRGSRGARSQLFPPTEAQSTAAEAPLARRG------ 119
+G PA +PG++ A PG+ G P P+G GA+ PP S + + G
Sbjct: 350 KGEVGPAGSPGSNGA-PGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPG 408
Query: 120 --GRRRGPGPARERGGRGLEEGVSGESLPGA----GGRRLRG-SGSPSRPSLTLSDPPNL 172
G R PGPA G GL G GA G R RG +G P P D +
Sbjct: 409 LMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDG 468
Query: 173 SNLEEFPPVGSVPPGPTGTK 192
S E P + PG G +
Sbjct: 469 SPGE---PGANGLPGAAGER 485
Score = 38.5 bits (88), Expect = 0.040
Identities = 63/248 (25%), Positives = 78/248 (31%), Gaps = 30/248 (12%)
Query: 68 GPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRGPGP 127
G P PG + A R G P G G + PP A L G R G G
Sbjct: 678 GAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPP-GPPGAAGTPGLQGMPGERGGLGS 736
Query: 128 ARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDP--------PNLSNLEEFP 179
+G +G G + +PG G RG P P P P L +
Sbjct: 737 PGPKGDKGEPGGPGADGVPGKDGP--RGPTGPIGPPGPAGQPGDKGEGGAPGLPGIA--G 792
Query: 180 PVGSV-------PPGPTGTKPSRRINPTPVSE-ERSLSKPKTCFTSPPISCVPSSQPSAL 231
P GS PPGP G + N P + ER K P ++ P A
Sbjct: 793 PRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAG 852
Query: 232 DTSPWGL----GLP--PGCRSLQEEREMLRKERSKQLQQSPTPTCPTPELGSPLPSRTGS 285
P G+ G P PG R + S +P P P+ G P
Sbjct: 853 PPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGS---NGNPGPPGPSGSPGKDGPPGPAG 909
Query: 286 LTDEPADP 293
T P P
Sbjct: 910 NTGAPGSP 917
Score = 35.8 bits (81), Expect = 0.26
Identities = 41/143 (28%), Positives = 53/143 (37%), Gaps = 19/143 (13%)
Query: 66 PQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEA---QSTAAEAPLARRG--- 119
P+G P PG A R RGS G PP A S A+ + G
Sbjct: 301 PRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPG 360
Query: 120 -----GRRRGPGPARERGGRGL--EEGVSGESLPGAGGRRLRGSGSPSRPSLT-LSDPPN 171
G+R PGP G +G G++G PG G + +G P P L PP
Sbjct: 361 SNGAPGQRGEPGPQGHAGAQGPPGPPGINGS--PGGKG-EMGPAGIPGAPGLMGARGPPG 417
Query: 172 LSNLEEFPPV--GSVPPGPTGTK 192
+ P + G+ PG G K
Sbjct: 418 PAGANGAPGLRGGAGEPGKNGAK 440
Score = 32.3 bits (72), Expect = 2.8
Identities = 30/102 (29%), Positives = 32/102 (31%), Gaps = 17/102 (16%)
Query: 66 PQGPPTPAKTPGASAA--------LPGRPGGP----PRGSRGARSQLFPPTEAQSTAAEA 113
PQGP G A PG PG P P G +GA P
Sbjct: 1087 PQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSG 1146
Query: 114 PLARRG-----GRRRGPGPARERGGRGLEEGVSGESLPGAGG 150
P + G G PGP RG RG E PG G
Sbjct: 1147 PPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPG 1188
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 55.1 bits (131), Expect = 4e-07
Identities = 67/259 (25%), Positives = 92/259 (35%), Gaps = 50/259 (19%)
Query: 69 PPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRGPGPA 128
PP P P A PG P GPP A + PP AQ+ G P PA
Sbjct: 270 PPPPPPAPATLARPPGHPAGPPT----AAPAVPPPAAAQNG---------GSAGAAPAPA 316
Query: 129 RERGGRGLEEGVSGESLPGAGG------------RRLRGSGSPSRPSLTLSDPPN-LSNL 175
GG GVSG+ PGA +R+ + P+ +L S P + +++
Sbjct: 317 PAAGG---PAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASM 373
Query: 176 EEFPPVGSVPPGPTGTKPSRRINPTPVSE------ERSLSKPKTCFTS-------PPISC 222
P + P P P PT + + +SLS+ T TS P +
Sbjct: 374 VIGPTMQGALPSPAAVPPPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGIRATLTPTVLA 433
Query: 223 VPSSQPSALDTSPWGLGLPPG---CRSLQEEREMLRKERSKQLQ-----QSPTPTCPTPE 274
QP T+ LPPG RS + M+ ++ Q+Q Q T P P
Sbjct: 434 PRLPQPPQNPTNIQNFQLPPGMVLVRSENGQLLMIPQQALAQMQAQAHAQPQTTMAPRPA 493
Query: 275 LGSPLPSRTGSLTDEPADP 293
+ P S P P
Sbjct: 494 TPTSAPPVQISTVQAPGTP 512
Score = 40.8 bits (94), Expect = 0.008
Identities = 48/209 (22%), Positives = 66/209 (31%), Gaps = 35/209 (16%)
Query: 68 GPPTPAK--TPGASAALPGRPGGPPRGSRGARSQLFP-----------PTEAQSTAAEAP 114
GPP+P + P A + PP GS G+ + + P A A
Sbjct: 106 GPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAA 165
Query: 115 LARRGGRRRGPGPARERG-------GRGLEEGVSGE--------------SLPGAGGRRL 153
LA R G GPGP G G G + ++G SL G L
Sbjct: 166 LAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAAL 225
Query: 154 RGSGSPSRPSLTLSDPPNLSNLEEFPPVGSVPPGPTGTKPSRRINPTPVSEERSLSKPKT 213
P+ P + PP + P PP P P +L++P
Sbjct: 226 LPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPG 285
Query: 214 CFTSPPISCVPSSQPSALDTSPWGLGLPP 242
PP + P+ P A + G P
Sbjct: 286 HPAGPP-TAAPAVPPPAAAQNGGSAGAAP 313
Score = 36.6 bits (83), Expect = 0.15
Identities = 41/176 (23%), Positives = 55/176 (31%), Gaps = 7/176 (3%)
Query: 119 GGRRRGPG-PARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEE 177
G GP PA G E +G + PG GG + G SP RP + P + L
Sbjct: 69 GAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRP 128
Query: 178 FP--PVGSVPPGPTGTKPSRRINPTPVSEERSLSKPK-TCFTSPPISCVPSSQPSALDTS 234
P GS P P + P P + P P P
Sbjct: 129 PPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGK 188
Query: 235 PWGLGLPPGCRSLQEEREMLRKERSKQLQQSPTPTCPTPELGSPLPSRTGSLTDEP 290
P G P ++L +L + S P L P P+ G++ P
Sbjct: 189 PAG---PGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTP 241
Score = 33.5 bits (75), Expect = 1.3
Identities = 53/214 (24%), Positives = 67/214 (31%), Gaps = 44/214 (20%)
Query: 68 GPPTPAKTPGASAALPGRP----------------GGP-------------PRGSRGARS 98
G P A G +A G P GGP P G +
Sbjct: 65 GSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAA 124
Query: 99 QLFPPTEAQSTAAEAPLARRGGRRRGP-----GPARERGGRGLEEGVSGESLPGAGGRRL 153
+L PP E S + AP+ GP GPA+ G L PG G
Sbjct: 125 KLRPPPEG-SAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPG 183
Query: 154 RGSGSPSRP--SLTLSDPPNLSNLEE--FPPVGSVPPGPTGTKPSRRINPTPVSEERSLS 209
G G P+ P + TL+ L N P V V GP P P P + +
Sbjct: 184 PGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPL----PKPAAPGTVIQ 239
Query: 210 KPK-TCFTSPPISCVPSSQPSALDTSPWGLGLPP 242
P +PP PS + +P PP
Sbjct: 240 TPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPP 273
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 53.9 bits (128), Expect = 9e-07
Identities = 64/241 (26%), Positives = 89/241 (36%), Gaps = 33/241 (13%)
Query: 66 PQGPPTP-AKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRG 124
P+G PTP A TP P GGP S P A + A P + +G
Sbjct: 982 PKGAPTPPAATP------PSPKGGPATPS---------PKGAPTPPAVTPPSPKGSPAAT 1026
Query: 125 PGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDP---PNLSNLEEFP-P 180
P P G + S G+ G+P+ P+ TL P P +L+ P P
Sbjct: 1027 PFPK----GASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTP 1082
Query: 181 VGSVPPGPTGTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPSALDTSP-WGLG 239
+ PP P G + P+ + PK +PP P++ P+A SP GL
Sbjct: 1083 PAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTT-PAATPPSPKGGLA 1141
Query: 240 LPP-------GCRSLQEEREMLRKERSKQLQQSPTPTCPTPELGSPLPSRTGSLTDEPAD 292
PP + + L K +P T P+P+ G PS G+ T A
Sbjct: 1142 TPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAAT 1201
Query: 293 P 293
P
Sbjct: 1202 P 1202
Score = 44.7 bits (104), Expect = 6e-04
Identities = 57/237 (24%), Positives = 76/237 (32%), Gaps = 19/237 (8%)
Query: 69 PPTPAKTPGASAALPGRPGG---PPRGSRGARSQLFP-PTEAQSTAAEAPLARRGGRRRG 124
PP+P P SA P P G PP+ + P P E +T A
Sbjct: 858 PPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSS 917
Query: 125 PGPARERGG-RGLEEGVSGESLPGAGGRR----LRGSGSPS---RPSLTLSDPPNLSNLE 176
P AR +G+ S + P G +PS P+ + PP+
Sbjct: 918 PKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGP 977
Query: 177 EFPPVGSVPPGPTGTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPSALDTSPW 236
P P P T PS + P S PK T P ++ A P
Sbjct: 978 ATPSPKGAPTPPAATPPSPKGGPATPS-------PKGAPTPPAVTPPSPKGSPAATPFPK 1030
Query: 237 GLGLPPGCRSLQEEREMLRKERSKQLQQSPTPTCPTPELGSPLPSRTGSLTDEPADP 293
G PP + K +P T P+P+ G PS G+ T A P
Sbjct: 1031 GASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATP 1087
Score = 43.9 bits (102), Expect = 0.001
Identities = 64/262 (24%), Positives = 92/262 (35%), Gaps = 37/262 (14%)
Query: 68 GPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRGPG- 126
G P P P A P P G P S PT S P A + GP
Sbjct: 1325 GTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAM 1384
Query: 127 --PARERG-------GRGLEEGV---SGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSN 174
P+ +RG G V S + P R G+ +PS+ LT PP ++
Sbjct: 1385 TPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTR-EGAATPSKGDLT---PPAVTP 1440
Query: 175 LE-EFPPVGSVPPG-------------PTGTKPSRRINPTPVSEERSLSKPKTCFTSPPI 220
+ + P S P G P T PS + P P S S K T P+
Sbjct: 1441 VSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPM 1500
Query: 221 SCVPSSQPSALDTSPWGLGLPPGCR--SLQEEREMLRKERSKQLQQSPTPTCPTPELGSP 278
+ P+ + +SP + P R + +L K+ L +P P + P
Sbjct: 1501 GA--PTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPATL--APKEALIPPAMTVP 1556
Query: 279 LPSRTGSLTDEPADPARVSSRQ 300
P +T ++ PA SS++
Sbjct: 1557 SPKKTPAIPTPKEAPATPSSKE 1578
Score = 41.6 bits (96), Expect = 0.005
Identities = 58/234 (24%), Positives = 79/234 (33%), Gaps = 38/234 (16%)
Query: 70 PTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGG-----RRRG 124
P+P P AA P P G P PP A + A P + +GG +
Sbjct: 1235 PSPKGAPTTPAATPPSPKGGPATP--------PPKGAPTPPAATPPSLKGGLATPPHKGA 1286
Query: 125 PGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPPVGSV 184
P PA V P G G+P+ P+ T PP+ PP
Sbjct: 1287 PNPA-----------VVTPPSPKGGPATSPPKGAPTPPAAT---PPSPKGSPGTPPPKGA 1332
Query: 185 PPGPTGTKPSRRINPT-PVSEERSLSKPKTCFTSPPISCVPSSQPSALDTSPWGLGL-PP 242
P P T PS + PT P + S P T P S + P+A + G + PP
Sbjct: 1333 PTPPAVTPPSPKGTPTLPATTPSSKGGPTT-----PSSKEGPTPPAATPSHKGGPAMTPP 1387
Query: 243 GCR---SLQEEREMLRKERSKQLQQSPTPTCPTPELGSPLPSRTGSLTDEPADP 293
+ ++ + L P P G+ PS+ G LT P
Sbjct: 1388 SPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSK-GDLTPPAVTP 1440
Score = 41.6 bits (96), Expect = 0.005
Identities = 59/280 (21%), Positives = 94/280 (33%), Gaps = 53/280 (18%)
Query: 67 QGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEA-----QSTAAEAPLARRGGR 121
+GP PA TP P P RG + P + A A P+ R G
Sbjct: 1367 EGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAA 1426
Query: 122 -----------------RRGPGPARERGGRGLEEGVSGESLPGA---------GGRRLRG 155
++ P + +GG +LP +++
Sbjct: 1427 TPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVAT 1486
Query: 156 SGSPSR----------PSLTLSDPPNLSNLEEFPPVGSVPPGPTGTKPSRRINPTPVSEE 205
S SP + P+L P + + P P PT T S++ P ++ +
Sbjct: 1487 SSSPKKAPATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKK-TPATLAPK 1545
Query: 206 RSLSKPKTCFTSP------PISCVPSSQPSALDTSPWGLGLPPGCRSLQEEREML--RKE 257
+L P SP P + PS+ + S P + +E+L
Sbjct: 1546 EALIPPAMTVPSPKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAV 1605
Query: 258 RSKQLQQSPTP---TCPTPELGSPLPSRTGSLTDEPADPA 294
S +++PTP T P+PE G P+ G+ T P P+
Sbjct: 1606 TSPSPKEAPTPPAVTPPSPEKGPATPAPKGTPTSPPVTPS 1645
Score = 37.0 bits (84), Expect = 0.12
Identities = 56/236 (23%), Positives = 78/236 (33%), Gaps = 27/236 (11%)
Query: 66 PQGPPTPAK----TPGASAALPGRPGGP------PRGSRGARSQLFPPTEAQSTAAEAPL 115
P+G P P +P A P G P P +G + PP A +T A P
Sbjct: 1099 PKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATP-PPKGAPTTPAATPP 1157
Query: 116 ARRGGRRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNL 175
+ +GG P G + S P G G+P+ P+ T P L
Sbjct: 1158 SPKGGLATPPPK-----GAPTTPAATPPS-PKGGLATPSPKGAPTTPAATPPSPKG--GL 1209
Query: 176 EEFPPVGS------VPPGPTGTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPS 229
P G+ PP P G + P + + PK +PP P+ +
Sbjct: 1210 ATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAA 1269
Query: 230 ALDTSPWGLGLPPGCRSLQEEREMLRKERSKQLQQSPTPTCPTPELGSPLPSRTGS 285
+ GL PP + + SP PTP +P PS GS
Sbjct: 1270 TPPSLKGGLATPPH-KGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATP-PSPKGS 1323
Score = 35.0 bits (79), Expect = 0.44
Identities = 57/247 (23%), Positives = 91/247 (36%), Gaps = 40/247 (16%)
Query: 69 PPTPAKTPGASAALPGRPGGPPRGSRGAR-SQLFPPTEAQSTAAEAPLARRG-GRRRGPG 126
PP+P K P A+ A G P PP + S P + A P A +G ++GP
Sbjct: 1621 PPSPEKGP-ATPAPKGTPTSPPVTPSSLKDSPTSPASVTCKMGATVPQASKGLPAKKGPT 1679
Query: 127 PARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPPVGSVPP 186
+E E + P G + + S + S P + P+ N + P+ +V P
Sbjct: 1680 ALKEVLVAPAPESTPIITAPTRKGPQTKKSSATSPP---ICPDPSAKNGSK-GPLSTVAP 1735
Query: 187 GPTGTKPSRRINPTPVSEERS-LSKPKTCFTSPPISCVPSSQPSALDTSPWGLGLPPGCR 245
P PV ++ S +K K SP P + P + ++P
Sbjct: 1736 APL----------LPVQKDSSKTAKGKDASHSPK---GPLAPPESKASTPL--------- 1773
Query: 246 SLQEEREMLRKERSKQLQQSPTPTCPTPELGSP----------LPSRTGSLTDEPADPAR 295
+ ++L K S + +P+P P SP LPS G + + P+ P
Sbjct: 1774 TAAAFEKVLPKPESASVSAAPSPPVSLPLAPSPVPTLPPKQQFLPSSPGLVLESPSKPLA 1833
Query: 296 VSSRQRL 302
+ L
Sbjct: 1834 PADEDEL 1840
Score = 33.9 bits (76), Expect = 0.98
Identities = 49/247 (19%), Positives = 78/247 (31%), Gaps = 14/247 (5%)
Query: 66 PQGPPT-PAKTPGASAALPGRPGG---PPRGSRGARSQLFPPTEAQSTAAEAPLARRGGR 121
P G PT PA P + +P P P + S+ P T A A P
Sbjct: 1499 PMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAMTVPSP 1558
Query: 122 RRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSR----PSLTLSDPPNLSN--- 174
++ P + S P +G+ SP P++T P
Sbjct: 1559 KKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPA 1618
Query: 175 -LEEFPPVGSVPPGPTGTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPSAL-D 232
P G P P GT S + P+ + + + TC + P+
Sbjct: 1619 VTPPSPEKGPATPAPKGTPTSPPVTPSSLKDSPTSPASVTCKMGATVPQASKGLPAKKGP 1678
Query: 233 TSPWGLGLPPGCRSLQEEREMLRK-ERSKQLQQSPTPTCPTPELGSPLPSRTGSLTDEPA 291
T+ + + P S RK ++K+ + P CP P + ++ P
Sbjct: 1679 TALKEVLVAPAPESTPIITAPTRKGPQTKKSSATSPPICPDPSAKNGSKGPLSTVAPAPL 1738
Query: 292 DPARVSS 298
P + S
Sbjct: 1739 LPVQKDS 1745
Score = 33.1 bits (74), Expect = 1.7
Identities = 36/123 (29%), Positives = 49/123 (39%), Gaps = 18/123 (14%)
Query: 163 SLTLSDPPNLSNLEEFPPVGSVPPGPTGTKPSRRINPTPVSEERSLSKPKTCFTSPPISC 222
SL L PN + +P V +P GT P NP ++ + + SPP+S
Sbjct: 412 SLILKSSPNATY--HYPLVAQMPVSSVGTTPLVVTNPCTIAAAPTTTFEVATCVSPPMSS 469
Query: 223 VPSSQPSALDTSPWGLGLPPGCRSLQEEREMLRKERSKQ----LQQSPTPTCPTPELGSP 278
P S + TSP L + P + KE S Q L+ +P P PE
Sbjct: 470 GPIS--NIEPTSPAALVMAP----------VAPKEPSTQVATTLRIPVSPPLPDPEDLKN 517
Query: 279 LPS 281
LPS
Sbjct: 518 LPS 520
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 53.5 bits (127), Expect = 1e-06
Identities = 53/195 (27%), Positives = 68/195 (34%), Gaps = 28/195 (14%)
Query: 66 PQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRG-----G 120
PQGPP PG+P GPP +RS PP + Q + +G G
Sbjct: 78 PQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPG 137
Query: 121 RRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPP 180
+ +GP P +G + P G + R S SP P PP N + PP
Sbjct: 138 KPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSP--PGKPQGPPPQGGNQPQGPP 195
Query: 181 V------------GSVPPGPTGTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSQP 228
G+ P GP P + P P + +S S SPP P P
Sbjct: 196 PPPGKPQGPPPQGGNKPQGP--PPPGKPQGPPPQGDNKSQSA-----RSPPGK--PQGPP 246
Query: 229 SALDTSPWGLGLPPG 243
P G PPG
Sbjct: 247 PQGGNQPQGPPPPPG 261
Score = 52.0 bits (123), Expect = 3e-06
Identities = 68/265 (25%), Positives = 92/265 (34%), Gaps = 45/265 (16%)
Query: 66 PQGPPTPAKTPG----------ASAALPGRPGGPP-RGSRGARSQLFPPTEAQSTAAEAP 114
PQGPP P K G +S + PG+P GPP +G + PP + Q P
Sbjct: 150 PQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQG-----P 204
Query: 115 LARRGGRRRGPGPARERGG---RGLEEGVSGESLPGA-------GGRRLRGSGSPSRPSL 164
+ G + +GP P + G +G + S S PG GG + +G P P
Sbjct: 205 PPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPP--PGK 262
Query: 165 TLSDPPNLSNLEEFPPVGSVP--PGPTGTKPSRRINPTPVSEE----RSLSKPKTCFTSP 218
PP N + PP P P P G SR P + + ++P+ P
Sbjct: 263 PQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQ---GPP 319
Query: 219 PISCVPSSQPSALDTSPWG-------LGLPP-GCRSLQEEREMLRKERSKQLQQSPTPTC 270
P P P P G G PP G + R K + Q+ P
Sbjct: 320 PPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQG 379
Query: 271 PTPELGSPLPSRTGSLTDEPADPAR 295
P P G +P P R
Sbjct: 380 PPPPAGGNPQQPQAPPAGQPQGPPR 404
Score = 50.8 bits (120), Expect = 8e-06
Identities = 63/251 (25%), Positives = 86/251 (34%), Gaps = 36/251 (14%)
Query: 66 PQGPPTPAKTPGASAALPGRP-GGPPRGSRGARSQLFPPTEAQSTAAEAPLARRG----G 120
PQGPP+P PG+P G PP+G + PP + Q + +G G
Sbjct: 47 PQGPPSP----------PGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPG 96
Query: 121 RRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPP 180
+ +GP P ++ + P GG + G P P PP N + PP
Sbjct: 97 KPQGPPPQGDKSRSPRSPPGKPQGPPPQGGN--QPQGPPPPPGKPQGPPPQGGNKPQGPP 154
Query: 181 VGSVP--PGPTGTKPSRRINPTPVSEE----RSLSKPKTCFTSPPISCVPSSQPSALDTS 234
P P P G SR P + + ++P+ PP P P
Sbjct: 155 PPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQ---GPPPPPGKPQGPPPQGGNK 211
Query: 235 PWG-------LGLPP-GCRSLQEEREMLRKERSKQLQQSPTPTCPTPELGSPL--PSRTG 284
P G G PP G Q R K + Q P P P G P P + G
Sbjct: 212 PQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGG 271
Query: 285 SLTDEPADPAR 295
+ P P +
Sbjct: 272 NKPQGPPPPGK 282
Score = 45.8 bits (107), Expect = 2e-04
Identities = 42/152 (27%), Positives = 58/152 (38%), Gaps = 15/152 (9%)
Query: 66 PQGPPTPAKTPGASAALPGRP-GGPPRGSRGARSQLFPPTEAQSTAAEAPLARRG----- 119
PQGPP PG+P G PP+G +RS PP + Q + +G
Sbjct: 263 PQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPP 322
Query: 120 GRRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFP 179
G+ +GP P +G + P GG + R + SP P P N
Sbjct: 323 GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSP--PGKPQGPPQQEGN----N 376
Query: 180 PVGSVPPGPTGTKPSRRINPTPVSEERSLSKP 211
P G PP P G P + P P + + +P
Sbjct: 377 PQG--PPPPAGGNPQQPQAP-PAGQPQGPPRP 405
Score = 36.2 bits (82), Expect = 0.20
Identities = 43/165 (26%), Positives = 55/165 (33%), Gaps = 28/165 (16%)
Query: 58 REQSSRVLPQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLAR 117
+ QS+R P P P G P P G P+G PP + + P
Sbjct: 231 KSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQG---------PPPQGGNKPQGPP--- 278
Query: 118 RGGRRRGPGP---ARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSN 174
G+ +GP P ++ R R G P GG + G P P PP N
Sbjct: 279 PPGKPQGPPPQGGSKSRSSRSPPGKPQGP--PPQGGN--QPQGPPPPPGKPQGPPPQGGN 334
Query: 175 LEEFPPVGSVPPGPTGTKPSRRINPTPVSEERSLSKPKTCFTSPP 219
+ PP P GP P S+ RS P PP
Sbjct: 335 KPQGPPPPGKPQGPP---------PQGGSKSRSARSPPGKPQGPP 370
Score = 32.3 bits (72), Expect = 2.8
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 66 PQGPPTPAK-TPGASAALP-GRPGGPPRGSRGAR 97
PQGPP PA P A P G+P GPPR +G R
Sbjct: 377 PQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGR 410
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 53.1 bits (126), Expect = 2e-06
Identities = 67/253 (26%), Positives = 91/253 (35%), Gaps = 33/253 (13%)
Query: 60 QSSRVLPQGPPT-PAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLA-- 116
+S+ P PP+ P + P S PG GPP R P ++ + P+
Sbjct: 134 RSTSAKPFSPPSGPGRFPVPS---PGHRSGPPEPQRNRMPPPRPDVGSKPDSIPPPVPST 190
Query: 117 ----RRGGRRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNL 172
+ RG P G R G + PG G L G GS + L+ S P
Sbjct: 191 PRPIQSSPHNRGSPPV-PGGPRQPSPGPTPPPFPGNRGTAL-GGGSIRQSPLSSSSP--F 246
Query: 173 SNLEEFPPVGS--------VPPGPTGTKPS--RRINPTPVSEERSLSKPKTCFTSPPISC 222
SN PP S PP P G +PS R P P + +KP T P +
Sbjct: 247 SNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQN---NKPPVPSTPRPSAS 303
Query: 223 VPSSQPSALDTSPWGLGLPPGCRSLQEEREMLRKERSKQLQQSPTPTCPTPELGSPLPSR 282
+ P + P LPP E + ++ S S TP P+P PLP
Sbjct: 304 SQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLS---LSSSTPPLPSPGRSGPLPPP 360
Query: 283 TGSLTDEPADPAR 295
++ P P R
Sbjct: 361 P---SERPPPPVR 370
Score = 40.8 bits (94), Expect = 0.008
Identities = 48/192 (25%), Positives = 68/192 (35%), Gaps = 28/192 (14%)
Query: 58 REQSSRVLPQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLAR 117
R +S P PP P++ PG P PP S + P +++ PL
Sbjct: 299 RPSASSQAPPPPPPPSR--------PGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPS 350
Query: 118 RGGRRRGPGPARERGGRGLEE--GVSGESLP-------GAGGRRLRGSGSPSRPSLTLSD 168
G P P ER + + G SG P G+ R L +P PS + D
Sbjct: 351 PGRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRAL--PATPQLPSRSGVD 408
Query: 169 PPNLSNLEEFPP----VGSVPPGPTGTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVP 224
P PP G+ PP P T +P +E ++ F PIS +P
Sbjct: 409 SPRSGPRPPLPPDRPSAGAPPPPPPSTSIRNGFQDSPCEDEW-----ESRFYFHPISDLP 463
Query: 225 SSQPSALDTSPW 236
+P T +
Sbjct: 464 PPEPYVQTTKSY 475
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 53.1 bits (126), Expect = 2e-06
Identities = 67/253 (26%), Positives = 91/253 (35%), Gaps = 33/253 (13%)
Query: 60 QSSRVLPQGPPT-PAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLA-- 116
+S+ P PP+ P + P S PG GPP R P ++ + P+
Sbjct: 134 RSTSAKPFSPPSGPGRFPVPS---PGHRSGPPEPQRNRMPPPRPDVGSKPDSIPPPVPST 190
Query: 117 ----RRGGRRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNL 172
+ RG P G R G + PG G L G GS + L+ S P
Sbjct: 191 PRPIQSSPHNRGSPPV-PGGPRQPSPGPTPPPFPGNRGTAL-GGGSIRQSPLSSSSP--F 246
Query: 173 SNLEEFPPVGS--------VPPGPTGTKPS--RRINPTPVSEERSLSKPKTCFTSPPISC 222
SN PP S PP P G +PS R P P + +KP T P +
Sbjct: 247 SNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQN---NKPPVPSTPRPSAS 303
Query: 223 VPSSQPSALDTSPWGLGLPPGCRSLQEEREMLRKERSKQLQQSPTPTCPTPELGSPLPSR 282
+ P + P LPP E + ++ S S TP P+P PLP
Sbjct: 304 SQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLS---LSSSTPPLPSPGRSGPLPPP 360
Query: 283 TGSLTDEPADPAR 295
++ P P R
Sbjct: 361 P---SERPPPPVR 370
Score = 40.8 bits (94), Expect = 0.008
Identities = 48/192 (25%), Positives = 68/192 (35%), Gaps = 28/192 (14%)
Query: 58 REQSSRVLPQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLAR 117
R +S P PP P++ PG P PP S + P +++ PL
Sbjct: 299 RPSASSQAPPPPPPPSR--------PGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPS 350
Query: 118 RGGRRRGPGPARERGGRGLEE--GVSGESLP-------GAGGRRLRGSGSPSRPSLTLSD 168
G P P ER + + G SG P G+ R L +P PS + D
Sbjct: 351 PGRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRAL--PATPQLPSRSGVD 408
Query: 169 PPNLSNLEEFPP----VGSVPPGPTGTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVP 224
P PP G+ PP P T +P +E ++ F PIS +P
Sbjct: 409 SPRSGPRPPLPPDRPSAGAPPPPPPSTSIRNGFQDSPCEDEW-----ESRFYFHPISDLP 463
Query: 225 SSQPSALDTSPW 236
+P T +
Sbjct: 464 PPEPYVQTTKSY 475
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 51.2 bits (121), Expect = 6e-06
Identities = 80/285 (28%), Positives = 94/285 (32%), Gaps = 87/285 (30%)
Query: 63 RVLPQGPPTPAK-TPGA-SAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGG 120
R P PTPA+ TP + S AL R GPP S + P+ E+P + G
Sbjct: 758 RTSPSVTPTPARGTPRSQSFALRARRKGPPPPPPKRLSSVSGPSPEPPPLDESPGPKEGA 817
Query: 121 ---RRRG----------PGPARERG-------------GRGLEEGVSGESLPGAGG---- 150
RRR PGP G G G SGE LP A
Sbjct: 818 TGPRRRTLSEPAGPSEPPGPPAPAGPASDTEEEEPGPEGTPPSRGSSGEGLPFAEEGNLT 877
Query: 151 --RRLRGSGSPSRPS---------LTLSDP----PNLSNLEEFPP------VGSVPPGPT 189
+R + +G P R + LT SD P E V S PGP
Sbjct: 878 IKQRPKPAGPPPRETPVPPGLDFNLTESDTVKRRPKCREREPLQTALLAFGVASATPGPA 937
Query: 190 GTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPSALDTSPWGLGLPPGCRSLQE 249
PS PTP SPP S +P +PS+L L P
Sbjct: 938 APLPS----PTPGE-------------SPPASSLPQPEPSSLPAQGVPTPLAPS------ 974
Query: 250 EREMLRKERSKQLQQSPTPTCPTPELGSPLPSRTGSLTDEPADPA 294
Q P P CP P L S SR T+ PA PA
Sbjct: 975 -----------PAMQPPVPPCPGPGLESSAASRWNGETEPPAAPA 1008
Score = 49.3 bits (116), Expect = 2e-05
Identities = 70/255 (27%), Positives = 88/255 (34%), Gaps = 33/255 (12%)
Query: 66 PQGPPT---PAKTPGASAAL------PGRPGGPPRGSRGARSQLFP-PTEAQSTA-AEAP 114
PQG P+ P PGA A P P PPR R + S P PTE + AE P
Sbjct: 677 PQGSPSSPAPGPPPGAPWAFSYLAGPPATPPDPPRPKRRSHSLSRPGPTEGDAEGEAEGP 736
Query: 115 LARRGG------RRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSD 168
+ G RR G G + R R G P P LS
Sbjct: 737 VGSTLGSYATLTRRPGRSALVRTSPSVTPTPARGTPRSQSFALRARRKGPPPPPPKRLS- 795
Query: 169 PPNLSNLEEFPPVGSVPPGPT--GTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSS 226
++S PP PGP T P RR +SE S+P PP P+S
Sbjct: 796 --SVSGPSPEPPPLDESPGPKEGATGPRRR----TLSEPAGPSEP----PGPPAPAGPAS 845
Query: 227 QPSALDTSPWGLGLPPGCRSLQEEREMLRKERSKQLQQSPTPTCPTPELGSPLPSRTGSL 286
+ P G P R E +E + ++Q P P P P P +L
Sbjct: 846 DTEEEEPGPEG---TPPSRGSSGEGLPFAEEGNLTIKQRPKPAGPPPRETPVPPGLDFNL 902
Query: 287 TDEPADPARVSSRQR 301
T+ R R+R
Sbjct: 903 TESDTVKRRPKCRER 917
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 51.2 bits (121), Expect = 6e-06
Identities = 80/285 (28%), Positives = 94/285 (32%), Gaps = 87/285 (30%)
Query: 63 RVLPQGPPTPAK-TPGA-SAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGG 120
R P PTPA+ TP + S AL R GPP S + P+ E+P + G
Sbjct: 840 RTSPSVTPTPARGTPRSQSFALRARRKGPPPPPPKRLSSVSGPSPEPPPLDESPGPKEGA 899
Query: 121 ---RRRG----------PGPARERG-------------GRGLEEGVSGESLPGAGG---- 150
RRR PGP G G G SGE LP A
Sbjct: 900 TGPRRRTLSEPAGPSEPPGPPAPAGPASDTEEEEPGPEGTPPSRGSSGEGLPFAEEGNLT 959
Query: 151 --RRLRGSGSPSRPS---------LTLSDP----PNLSNLEEFPP------VGSVPPGPT 189
+R + +G P R + LT SD P E V S PGP
Sbjct: 960 IKQRPKPAGPPPRETPVPPGLDFNLTESDTVKRRPKCREREPLQTALLAFGVASATPGPA 1019
Query: 190 GTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPSALDTSPWGLGLPPGCRSLQE 249
PS PTP SPP S +P +PS+L L P
Sbjct: 1020 APLPS----PTPGE-------------SPPASSLPQPEPSSLPAQGVPTPLAPS------ 1056
Query: 250 EREMLRKERSKQLQQSPTPTCPTPELGSPLPSRTGSLTDEPADPA 294
Q P P CP P L S SR T+ PA PA
Sbjct: 1057 -----------PAMQPPVPPCPGPGLESSAASRWNGETEPPAAPA 1090
Score = 49.3 bits (116), Expect = 2e-05
Identities = 70/255 (27%), Positives = 88/255 (34%), Gaps = 33/255 (12%)
Query: 66 PQGPPT---PAKTPGASAAL------PGRPGGPPRGSRGARSQLFP-PTEAQSTA-AEAP 114
PQG P+ P PGA A P P PPR R + S P PTE + AE P
Sbjct: 759 PQGSPSSPAPGPPPGAPWAFSYLAGPPATPPDPPRPKRRSHSLSRPGPTEGDAEGEAEGP 818
Query: 115 LARRGG------RRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSD 168
+ G RR G G + R R G P P LS
Sbjct: 819 VGSTLGSYATLTRRPGRSALVRTSPSVTPTPARGTPRSQSFALRARRKGPPPPPPKRLS- 877
Query: 169 PPNLSNLEEFPPVGSVPPGPT--GTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSS 226
++S PP PGP T P RR +SE S+P PP P+S
Sbjct: 878 --SVSGPSPEPPPLDESPGPKEGATGPRRR----TLSEPAGPSEP----PGPPAPAGPAS 927
Query: 227 QPSALDTSPWGLGLPPGCRSLQEEREMLRKERSKQLQQSPTPTCPTPELGSPLPSRTGSL 286
+ P G P R E +E + ++Q P P P P P +L
Sbjct: 928 DTEEEEPGPEG---TPPSRGSSGEGLPFAEEGNLTIKQRPKPAGPPPRETPVPPGLDFNL 984
Query: 287 TDEPADPARVSSRQR 301
T+ R R+R
Sbjct: 985 TESDTVKRRPKCRER 999
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 50.4 bits (119), Expect = 1e-05
Identities = 67/274 (24%), Positives = 90/274 (32%), Gaps = 46/274 (16%)
Query: 61 SSRVLPQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTA---------- 110
S R P PT ++ P S LP RP P + G S P +AQ
Sbjct: 1084 SPRTSPCQSPTISEGPVPS--LPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQKDPAQP 1141
Query: 111 ----------AEAPLARRGGRRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPS 160
AP R +R P P+ R + G P + G R +P
Sbjct: 1142 LEPKRPPPPRPVAPPTRPAPPQRPPPPSGARSPAPTRKEFGGIGAPPSPGVARREMEAPK 1201
Query: 161 RPSLTLSDPPNLSNLEEFPPVGSVPPGPTGTKPSRRINPTPVSEERSLSKPKTCFTSPPI 220
P T D N+ + P G PGP G +R PT +S P++ +
Sbjct: 1202 SPGTTRKD--NIGRSQPSPQAGLAGPGPAGYSTAR---PTIPPRAGVISAPQSHARASAG 1256
Query: 221 SCVPSSQPSALDTS----------------PWGLGLPPGCRSLQEEREMLRKERSKQLQQ 264
P SQ +TS P LPP + LQE L + Q
Sbjct: 1257 RLTPESQSKTSETSKGSTFLPEPLKPQAAFPPQSSLPPPAQRLQEP---LVPVAAPMPQS 1313
Query: 265 SPTPTCPTPELGSPLPSRTGSLTDEPADPARVSS 298
P P TP P + SL E + +V +
Sbjct: 1314 GPQPNLETPPQPPPRSRSSHSLPSEASSQPQVKT 1347
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 50.4 bits (119), Expect = 1e-05
Identities = 53/166 (31%), Positives = 62/166 (37%), Gaps = 27/166 (16%)
Query: 66 PQGPPTPAKTPG-----ASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGG 120
P GPP P PG A PG PG P G +GA + P EA + G
Sbjct: 33 PPGPPGPPGKPGQDGIDGEAGPPGLPGPP--GPKGAPGKPGKPGEAGLPGLPG-VDGLTG 89
Query: 121 RRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRG-------SGSPSRPSLTLSDPPNLS 173
R PGP G RG + PG GG+ L G SG P + L PP S
Sbjct: 90 RDGPPGPKGAPGERG---SLGPPGPPGLGGKGLPGPPGEAGVSGPPG--GIGLRGPPGPS 144
Query: 174 NLEEFPPVGSVPPGPTGTKPSRRINPTPVSEERSLSKPKTCFTSPP 219
L P PPGP G + P ++ L P C PP
Sbjct: 145 GLPGLPG----PPGPPGPPGHPGVLPEGATD---LQCPSICPPGPP 183
Score = 35.8 bits (81), Expect = 0.26
Identities = 42/141 (29%), Positives = 47/141 (33%), Gaps = 48/141 (34%)
Query: 60 QSSRVLPQGPPTPAKTPG--------------------------ASAALPGRPG-GPPRG 92
Q + P GPP P PG A LPG G PRG
Sbjct: 173 QCPSICPPGPPGPPGMPGFKGPTGYKGEQGEVGKDGEKGDPGPPGPAGLPGSVGLQGPRG 232
Query: 93 SRGARSQLFPPTEAQSTAAEAPLARRG--GRRRGPGPARERGGRGLE--EGVSGE----- 143
RG L PP + P+ RG G PG A +RG RG E G G+
Sbjct: 233 LRGLPGPLGPPGD------RGPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPKGDLGRPG 286
Query: 144 --SLPGAGGRRLRGSGSPSRP 162
PG G SG P P
Sbjct: 287 PKGTPGVAG----PSGEPGMP 303
Score = 34.7 bits (78), Expect = 0.57
Identities = 40/129 (31%), Positives = 49/129 (37%), Gaps = 32/129 (24%)
Query: 66 PQGPPTPAKTPGASAALPGRPG--GPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRR 123
P GPP P PG+ G PG GPP G RG PT G
Sbjct: 558 PAGPPGPPGPPGSI----GHPGARGPP-GYRG-------PT---------------GELG 590
Query: 124 GPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPPVGS 183
PGP +G RG ++G +G L G G +G P T D + + E PP
Sbjct: 591 DPGPRGNQGDRG-DKGAAGAGLDGPEGD--QGPQGPQGVPGTSKDGQDGAPGEPGPPGDP 647
Query: 184 VPPGPTGTK 192
PG G +
Sbjct: 648 GLPGAIGAQ 656
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 50.1 bits (118), Expect = 1e-05
Identities = 66/225 (29%), Positives = 93/225 (41%), Gaps = 53/225 (23%)
Query: 5 LESLLREEVSVAAVVRWIARSTQGSEDNAGEAAA-----LSSLRALRKEFVPFL--LNFL 57
LE+LL +V+VA + AR+ GS G AAA L L AL+++ + L + +
Sbjct: 168 LEALLSTKVAVAQFSQG-ARAAGGSGAGGGVAAAAVPLILEQLMALQQQQIHQLQLIEQI 226
Query: 58 REQSSRVLPQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLAR 117
R Q + ++ + PP P+ +P AA P PG P SQL P A +A AP A
Sbjct: 227 RSQVA-LMQRPPPRPSLSP---AAAPSAPGPAP-------SQL-PGLAALPLSAGAPAAA 274
Query: 118 RGGRRRGPG-PARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLE 176
G GP PA G + L SG S PG G PS P+
Sbjct: 275 IAGS--GPAAPAAFEGAQPLSRPESGASTPG-------GPAEPSAPAA------------ 313
Query: 177 EFPPVGSVPPGPTGTKPSRRINPTPVSEERSLSKPKTCFTSPPIS 221
P P P P P + + S+P++ T P ++
Sbjct: 314 --PSAAPAPAAPA---------PAPAPQSAASSQPQSASTPPALA 347
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 49.7 bits (117), Expect = 2e-05
Identities = 62/222 (27%), Positives = 85/222 (38%), Gaps = 29/222 (13%)
Query: 85 RPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRR--------RGPGPARERGGRGL 136
+ GG +RGA + PPT A P+ R G+R +GPG +R R
Sbjct: 81 KEGGGSANTRGAST---PPTLGDLFAGGFPVLRPAGQRDVAGGKTGQGPG-SRAPSPRLP 136
Query: 137 EEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPPVGSVPPGPTGTKPSRR 196
+ +SG +P A R G+ S P N+ PP PP P P
Sbjct: 137 NKTISGPLIPPASPRL----GNTSEAHGAARTAPPRPNVPAPPPPTPPPPPPPLPPPLPS 192
Query: 197 INP--TP-VSEERSLSKPKTCFTSPPISCVPSSQPSALDTSPWGLGLPPGCRSLQEEREM 253
+P TP VS L+K +PP+ C P P +P LPP S+ ++ +
Sbjct: 193 SSPIKTPLVSPPGPLTKGNLPVVAPPVPCAPPPPPPPPPPTP--PPLPPA--SVLSDKAV 248
Query: 254 LRKERSKQLQQSPTPTCPTPELGSPLPSRTGSLTDEPADPAR 295
+ L P P P G P L EPA PA+
Sbjct: 249 KPQLAPLHLPPIPPPLPLLPPCGYP------GLKAEPASPAQ 284
Score = 33.9 bits (76), Expect = 0.98
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Query: 66 PQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRGP 125
P PP P P AS + PP + S+ PP +S + +AP + G +
Sbjct: 289 PPAPPPPLP-PYASCSPRASLPAPPLPGVNSSSETPPPLPPKSPSFQAPPQKAGAQALPA 347
Query: 126 GPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLT 165
PA L++ G PGAGG +L +P S T
Sbjct: 348 PPAPPGSQPFLQKKRHGR--PGAGGGKLNPPPAPPARSPT 385
>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
Length = 1350
Score = 48.9 bits (115), Expect = 3e-05
Identities = 66/265 (24%), Positives = 86/265 (32%), Gaps = 46/265 (17%)
Query: 61 SSRVLPQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTA---------- 110
S R P PT ++ P S LP RP P + G S P +AQ
Sbjct: 1084 SPRTSPCQSPTISEGPVPS--LPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQKDPAQP 1141
Query: 111 ----------AEAPLARRGGRRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPS 160
AP R +R P P+ R + G P + G R +P
Sbjct: 1142 LEPKRPPPPRPVAPPTRPAPPQRPPPPSGARSPAPTRKEFGGIGAPPSPGVARREMEAPK 1201
Query: 161 RPSLTLSDPPNLSNLEEFPPVGSVPPGPTGTKPSRRINPTPVSEERSLSKPKTCFTSPPI 220
P T D N+ + P G PGP G +R PT +S P++ +
Sbjct: 1202 SPGTTRKD--NIGRSQPSPQAGLAGPGPAGYSTAR---PTIPPRAGVISAPQSHARASAG 1256
Query: 221 SCVPSSQPSALDTS----------------PWGLGLPPGCRSLQEEREMLRKERSKQLQQ 264
P SQ +TS P LPP + LQE L + Q
Sbjct: 1257 RLTPESQSKTSETSKGSTFLPEPLKPQAAFPPQSSLPPPAQRLQEP---LVPVAAPMPQS 1313
Query: 265 SPTPTCPTPELGSPLPSRTGSLTDE 289
P P TP P + SL E
Sbjct: 1314 GPQPNLETPPQPPPRSRSSHSLPSE 1338
Score = 32.3 bits (72), Expect = 2.8
Identities = 48/190 (25%), Positives = 63/190 (33%), Gaps = 32/190 (16%)
Query: 66 PQGPPTP--AKTPGASAALPGRPGGPPRGSRGARSQLFPP----TEAQSTAAEAPLARRG 119
PQ PP P A++P + G G PP R P T + P + G
Sbjct: 1162 PQRPPPPSGARSPAPTRKEFGGIGAPPSPGVARREMEAPKSPGTTRKDNIGRSQPSPQAG 1221
Query: 120 GRRRGPGPARERGGRGLEEGVSGE-SLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEE- 177
GPGPA R +G S P + R G +P S T + L E
Sbjct: 1222 --LAGPGPAGYSTARPTIPPRAGVISAPQSHARASAGRLTPESQSKTSETSKGSTFLPEP 1279
Query: 178 ------FPPVGSVPPGP----------------TGTKPSRRINPTPVSEERSLSKPKTCF 215
FPP S+PP +G +P+ P P RS +
Sbjct: 1280 LKPQAAFPPQSSLPPPAQRLQEPLVPVAAPMPQSGPQPNLETPPQPPPRSRSSHSLPSEA 1339
Query: 216 TSPPISCVPS 225
+S P PS
Sbjct: 1340 SSQPQQEQPS 1349
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 48.9 bits (115), Expect = 3e-05
Identities = 47/141 (33%), Positives = 57/141 (40%), Gaps = 31/141 (21%)
Query: 66 PQGPPTPAKTPGASAA--------LPGRPG--GP--PRGSRGARSQLFPPTEAQSTAAEA 113
PQGPP P +PG + LPGRPG GP P G +GA + P A +
Sbjct: 1061 PQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQG 1120
Query: 114 PLARRGGRRRGPGPARERGGRGLEEGVSGE-SLPG-AGGRRLRGSGSPSRPSLTLSDPPN 171
P+ PGPA G G E+G GE PG G + +G P PP
Sbjct: 1121 PVGL-------PGPAGPAGSPG-EDGDKGEIGEPGQKGSKGDKGENGP-------PGPPG 1165
Query: 172 LSNLEEFPPV--GSVPPGPTG 190
L P + G PGP G
Sbjct: 1166 LQGPVGAPGIAGGDGEPGPRG 1186
Score = 45.4 bits (106), Expect = 3e-04
Identities = 44/141 (31%), Positives = 56/141 (39%), Gaps = 30/141 (21%)
Query: 66 PQGPPTPAKTPGA--------SAALPGRPG----GPPRGSRGARSQLFPPTEAQSTAAEA 113
PQGPP + G A PG PG G P+G RG + + PP A A+
Sbjct: 1250 PQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKG 1309
Query: 114 PLARRGGRRRGPGPARERGGRGL--EEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPN 171
P G + PGP G G E G +G+ G GG + G P +P PP
Sbjct: 1310 P-PGDDGPKGNPGPVGFPGDPGPPGEPGPAGQD--GVGGDK-GEDGDPGQPG-----PPG 1360
Query: 172 LSNLEEFPPVGSVPPGPTGTK 192
P + PPGP G +
Sbjct: 1361 -------PSGEAGPPGPPGKR 1374
Score = 43.5 bits (101), Expect = 0.001
Identities = 40/131 (30%), Positives = 51/131 (38%), Gaps = 23/131 (17%)
Query: 60 QSSRVLPQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRG 119
Q +R+ +GPP P G PG GGP GS GA+ + P + P
Sbjct: 533 QQARIALRGPPGPMGLTGR----PGPVGGP--GSSGAKGESGDPGPQGPRGVQGP----- 581
Query: 120 GRRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFP 179
PGP + G RG G +PG G + G P L P + + E
Sbjct: 582 -----PGPTGKPGKRGRPGADGGRGMPGEPGAK-GDRGFDGLPGL----PGDKGHRGERG 631
Query: 180 PVGSVPPGPTG 190
P G PPGP G
Sbjct: 632 PQG--PPGPPG 640
Score = 43.1 bits (100), Expect = 0.002
Identities = 40/146 (27%), Positives = 56/146 (38%), Gaps = 25/146 (17%)
Query: 67 QGPPTPAKTPG--------ASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARR 118
QGPP P PG +PG PG +G RG P + P
Sbjct: 579 QGPPGPTGKPGKRGRPGADGGRGMPGEPGA--KGDRGFDGLPGLPGDKGHRGERGP---- 632
Query: 119 GGRRRGPGPARERGGRGLEEGVSGESLPGAGGRR--LRGSGSPSRPSLTLSDPPNLSNLE 176
+ PGP + G RG + + LPG G R L G+P P P ++ ++
Sbjct: 633 ---QGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPG-----QPGMAGVD 684
Query: 177 EFP-PVGSVPPGPTGTKPSRRINPTP 201
P P G++ P P ++ NP P
Sbjct: 685 GPPGPKGNMGPQGEPGPPGQQGNPGP 710
Score = 42.7 bits (99), Expect = 0.002
Identities = 42/138 (30%), Positives = 56/138 (40%), Gaps = 17/138 (12%)
Query: 66 PQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRGP 125
P GPP PGA+ A GR G +G++G PP + + P + P
Sbjct: 1367 PPGPPGKRGPPGAAGA-EGRQG--EKGAKGEAGAEGPPGKTGPVGPQGPAGK-------P 1416
Query: 126 GPARERGGRGLEEGVSGESLPGAGGR--RLRGSGSPSRPSLTLSDPPNLSNLEEFPPVGS 183
GP G RG+ V + LPGA G+ G P P L DP + +G
Sbjct: 1417 GP---EGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLK-GDPGSKGEKGHPGLIGL 1472
Query: 184 V-PPGPTGTKPSRRINPT 200
+ PPG G K R + T
Sbjct: 1473 IGPPGEQGEKGDRGLPGT 1490
Score = 39.7 bits (91), Expect = 0.018
Identities = 62/232 (26%), Positives = 80/232 (34%), Gaps = 41/232 (17%)
Query: 67 QGPPTPAKTPGASAA--------LPGRPG-----GP--PRGSRGARSQLFPPTEAQSTAA 111
QGP PG A + G+PG GP PRGSRGAR P ++
Sbjct: 861 QGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGG 920
Query: 112 EAPLARRGGRRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPN 171
+ P PGP ERG +G + V PG G G P + L P +
Sbjct: 921 DGP----------PGPPGERGPQGPQGPV---GFPGPKG----PPGPPGKDGL----PGH 959
Query: 172 LSNLEEFPPVGSV-PPGPTG-TKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPS 229
E G PPGP G P T ER P + + +
Sbjct: 960 PGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGA 1019
Query: 230 ALDTSPWGLG---LPPGCRSLQEEREMLRKERSKQLQQSPTPTCPTPELGSP 278
D P G+ P G R ER + + + L+ P P +GSP
Sbjct: 1020 KGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSP 1071
Score = 34.3 bits (77), Expect = 0.75
Identities = 63/238 (26%), Positives = 84/238 (35%), Gaps = 41/238 (17%)
Query: 66 PQGPPTPAKTPGASA--ALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGR-R 122
P GP PA PG +PG G +G GA Q PP G +
Sbjct: 1406 PVGPQGPAGKPGPEGLRGIPGPVG--EQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGE 1463
Query: 123 RG----------PGPARERGGRGL-----EEGVSGE-SLPGAGGRRLRGSGSPSRPSLTL 166
+G PG E+G RGL G G+ +PG G G P P L
Sbjct: 1464 KGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAG----PLGPPGPPGLPG 1519
Query: 167 SDPPNLSNLEEFPPVG----SVPPGPTGT--KPSRRINPTPVSEERSLSKPKTCFTSPPI 220
P N P G S PGP G+ P I P P+ LS KT + +
Sbjct: 1520 PQGPK-GNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLPI-----LSSKKTRRHTEGM 1573
Query: 221 SCVPSSQPSALDTSPWGLGLPPGCRSLQEEREMLRKERSKQLQQSPTPTCPTPELGSP 278
+ + LD S + SL+++ E ++ Q +P TC +L P
Sbjct: 1574 QA--DADDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMG--TQTNPARTCKDLQLSHP 1627
Score = 33.1 bits (74), Expect = 1.7
Identities = 32/91 (35%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
Query: 66 PQGPPTPAKTPGASAALPGRPGGP-PRGSRG----ARSQLFPPTEAQSTAAEAPLARRG- 119
P GPP PGA A G G P P+G G A + FP A AP + G
Sbjct: 1001 PPGPPGEQGLPGA-AGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGE 1059
Query: 120 GRRRGPGPARERGGRGLEEGVSGESLPGAGG 150
G + PGP G RG LPG G
Sbjct: 1060 GPQGPPGPVGSPGERGSAGTAGPIGLPGRPG 1090
Score = 33.1 bits (74), Expect = 1.7
Identities = 49/175 (28%), Positives = 57/175 (32%), Gaps = 49/175 (28%)
Query: 66 PQGPPT---PAKTPGASAALPGRPGGPPRGSR---------GARSQLFPPTEAQSTAAEA 113
P GPP P PG + G PG PRG + GAR PP
Sbjct: 1160 PPGPPGLQGPVGAPGIAGG-DGEPG--PRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPG 1216
Query: 114 PLARRG-----GRRRGPGPARERGGRGL--------------------EEGVSGES-LPG 147
P +G G PGP RG +G E+G GE+ PG
Sbjct: 1217 PPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPG 1276
Query: 148 AGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPPVGSVPPGPTGTKPSRRINPTPV 202
G G R + PP + PP PPG G K NP PV
Sbjct: 1277 PPGEAGVGGPKGERGEKGEAGPPGAAG----PPGAKGPPGDDGPKG----NPGPV 1323
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 48.9 bits (115), Expect = 3e-05
Identities = 47/141 (33%), Positives = 57/141 (40%), Gaps = 31/141 (21%)
Query: 66 PQGPPTPAKTPGASAA--------LPGRPG--GP--PRGSRGARSQLFPPTEAQSTAAEA 113
PQGPP P +PG + LPGRPG GP P G +GA + P A +
Sbjct: 1010 PQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQG 1069
Query: 114 PLARRGGRRRGPGPARERGGRGLEEGVSGE-SLPG-AGGRRLRGSGSPSRPSLTLSDPPN 171
P+ PGPA G G E+G GE PG G + +G P PP
Sbjct: 1070 PVGL-------PGPAGPAGSPG-EDGDKGEIGEPGQKGSKGDKGENGP-------PGPPG 1114
Query: 172 LSNLEEFPPV--GSVPPGPTG 190
L P + G PGP G
Sbjct: 1115 LQGPVGAPGIAGGDGEPGPRG 1135
Score = 45.4 bits (106), Expect = 3e-04
Identities = 44/141 (31%), Positives = 56/141 (39%), Gaps = 30/141 (21%)
Query: 66 PQGPPTPAKTPGA--------SAALPGRPG----GPPRGSRGARSQLFPPTEAQSTAAEA 113
PQGPP + G A PG PG G P+G RG + + PP A A+
Sbjct: 1199 PQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKG 1258
Query: 114 PLARRGGRRRGPGPARERGGRGL--EEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPN 171
P G + PGP G G E G +G+ G GG + G P +P PP
Sbjct: 1259 P-PGDDGPKGNPGPVGFPGDPGPPGEPGPAGQD--GVGGDK-GEDGDPGQPG-----PPG 1309
Query: 172 LSNLEEFPPVGSVPPGPTGTK 192
P + PPGP G +
Sbjct: 1310 -------PSGEAGPPGPPGKR 1323
Score = 43.5 bits (101), Expect = 0.001
Identities = 40/131 (30%), Positives = 51/131 (38%), Gaps = 23/131 (17%)
Query: 60 QSSRVLPQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRG 119
Q +R+ +GPP P G PG GGP GS GA+ + P + P
Sbjct: 482 QQARIALRGPPGPMGLTGR----PGPVGGP--GSSGAKGESGDPGPQGPRGVQGP----- 530
Query: 120 GRRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFP 179
PGP + G RG G +PG G + G P L P + + E
Sbjct: 531 -----PGPTGKPGKRGRPGADGGRGMPGEPGAK-GDRGFDGLPGL----PGDKGHRGERG 580
Query: 180 PVGSVPPGPTG 190
P G PPGP G
Sbjct: 581 PQG--PPGPPG 589
Score = 43.1 bits (100), Expect = 0.002
Identities = 40/146 (27%), Positives = 56/146 (38%), Gaps = 25/146 (17%)
Query: 67 QGPPTPAKTPG--------ASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARR 118
QGPP P PG +PG PG +G RG P + P
Sbjct: 528 QGPPGPTGKPGKRGRPGADGGRGMPGEPGA--KGDRGFDGLPGLPGDKGHRGERGP---- 581
Query: 119 GGRRRGPGPARERGGRGLEEGVSGESLPGAGGRR--LRGSGSPSRPSLTLSDPPNLSNLE 176
+ PGP + G RG + + LPG G R L G+P P P ++ ++
Sbjct: 582 ---QGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPG-----QPGMAGVD 633
Query: 177 EFP-PVGSVPPGPTGTKPSRRINPTP 201
P P G++ P P ++ NP P
Sbjct: 634 GPPGPKGNMGPQGEPGPPGQQGNPGP 659
Score = 42.7 bits (99), Expect = 0.002
Identities = 42/138 (30%), Positives = 56/138 (40%), Gaps = 17/138 (12%)
Query: 66 PQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRGP 125
P GPP PGA+ A GR G +G++G PP + + P + P
Sbjct: 1316 PPGPPGKRGPPGAAGA-EGRQG--EKGAKGEAGAEGPPGKTGPVGPQGPAGK-------P 1365
Query: 126 GPARERGGRGLEEGVSGESLPGAGGR--RLRGSGSPSRPSLTLSDPPNLSNLEEFPPVGS 183
GP G RG+ V + LPGA G+ G P P L DP + +G
Sbjct: 1366 GP---EGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLK-GDPGSKGEKGHPGLIGL 1421
Query: 184 V-PPGPTGTKPSRRINPT 200
+ PPG G K R + T
Sbjct: 1422 IGPPGEQGEKGDRGLPGT 1439
Score = 39.7 bits (91), Expect = 0.018
Identities = 62/232 (26%), Positives = 80/232 (34%), Gaps = 41/232 (17%)
Query: 67 QGPPTPAKTPGASAA--------LPGRPG-----GP--PRGSRGARSQLFPPTEAQSTAA 111
QGP PG A + G+PG GP PRGSRGAR P ++
Sbjct: 810 QGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGG 869
Query: 112 EAPLARRGGRRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPN 171
+ P PGP ERG +G + V PG G G P + L P +
Sbjct: 870 DGP----------PGPPGERGPQGPQGPV---GFPGPKG----PPGPPGKDGL----PGH 908
Query: 172 LSNLEEFPPVGSV-PPGPTG-TKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPS 229
E G PPGP G P T ER P + + +
Sbjct: 909 PGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGA 968
Query: 230 ALDTSPWGLG---LPPGCRSLQEEREMLRKERSKQLQQSPTPTCPTPELGSP 278
D P G+ P G R ER + + + L+ P P +GSP
Sbjct: 969 KGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSP 1020
Score = 34.3 bits (77), Expect = 0.75
Identities = 63/238 (26%), Positives = 84/238 (35%), Gaps = 41/238 (17%)
Query: 66 PQGPPTPAKTPGASA--ALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGR-R 122
P GP PA PG +PG G +G GA Q PP G +
Sbjct: 1355 PVGPQGPAGKPGPEGLRGIPGPVG--EQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGE 1412
Query: 123 RG----------PGPARERGGRGL-----EEGVSGE-SLPGAGGRRLRGSGSPSRPSLTL 166
+G PG E+G RGL G G+ +PG G G P P L
Sbjct: 1413 KGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAG----PLGPPGPPGLPG 1468
Query: 167 SDPPNLSNLEEFPPVG----SVPPGPTGT--KPSRRINPTPVSEERSLSKPKTCFTSPPI 220
P N P G S PGP G+ P I P P+ LS KT + +
Sbjct: 1469 PQGPK-GNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLPI-----LSSKKTRRHTEGM 1522
Query: 221 SCVPSSQPSALDTSPWGLGLPPGCRSLQEEREMLRKERSKQLQQSPTPTCPTPELGSP 278
+ + LD S + SL+++ E ++ Q +P TC +L P
Sbjct: 1523 QA--DADDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMG--TQTNPARTCKDLQLSHP 1576
Score = 33.1 bits (74), Expect = 1.7
Identities = 32/91 (35%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
Query: 66 PQGPPTPAKTPGASAALPGRPGGP-PRGSRG----ARSQLFPPTEAQSTAAEAPLARRG- 119
P GPP PGA A G G P P+G G A + FP A AP + G
Sbjct: 950 PPGPPGEQGLPGA-AGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGE 1008
Query: 120 GRRRGPGPARERGGRGLEEGVSGESLPGAGG 150
G + PGP G RG LPG G
Sbjct: 1009 GPQGPPGPVGSPGERGSAGTAGPIGLPGRPG 1039
Score = 33.1 bits (74), Expect = 1.7
Identities = 49/175 (28%), Positives = 57/175 (32%), Gaps = 49/175 (28%)
Query: 66 PQGPPT---PAKTPGASAALPGRPGGPPRGSR---------GARSQLFPPTEAQSTAAEA 113
P GPP P PG + G PG PRG + GAR PP
Sbjct: 1109 PPGPPGLQGPVGAPGIAGG-DGEPG--PRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPG 1165
Query: 114 PLARRG-----GRRRGPGPARERGGRGL--------------------EEGVSGES-LPG 147
P +G G PGP RG +G E+G GE+ PG
Sbjct: 1166 PPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPG 1225
Query: 148 AGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPPVGSVPPGPTGTKPSRRINPTPV 202
G G R + PP + PP PPG G K NP PV
Sbjct: 1226 PPGEAGVGGPKGERGEKGEAGPPGAAG----PPGAKGPPGDDGPKG----NPGPV 1272
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 48.9 bits (115), Expect = 3e-05
Identities = 47/141 (33%), Positives = 57/141 (40%), Gaps = 31/141 (21%)
Query: 66 PQGPPTPAKTPGASAA--------LPGRPG--GP--PRGSRGARSQLFPPTEAQSTAAEA 113
PQGPP P +PG + LPGRPG GP P G +GA + P A +
Sbjct: 1049 PQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQG 1108
Query: 114 PLARRGGRRRGPGPARERGGRGLEEGVSGE-SLPG-AGGRRLRGSGSPSRPSLTLSDPPN 171
P+ PGPA G G E+G GE PG G + +G P PP
Sbjct: 1109 PVGL-------PGPAGPAGSPG-EDGDKGEIGEPGQKGSKGDKGENGP-------PGPPG 1153
Query: 172 LSNLEEFPPV--GSVPPGPTG 190
L P + G PGP G
Sbjct: 1154 LQGPVGAPGIAGGDGEPGPRG 1174
Score = 45.4 bits (106), Expect = 3e-04
Identities = 44/141 (31%), Positives = 56/141 (39%), Gaps = 30/141 (21%)
Query: 66 PQGPPTPAKTPGA--------SAALPGRPG----GPPRGSRGARSQLFPPTEAQSTAAEA 113
PQGPP + G A PG PG G P+G RG + + PP A A+
Sbjct: 1238 PQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKG 1297
Query: 114 PLARRGGRRRGPGPARERGGRGL--EEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPN 171
P G + PGP G G E G +G+ G GG + G P +P PP
Sbjct: 1298 P-PGDDGPKGNPGPVGFPGDPGPPGEPGPAGQD--GVGGDK-GEDGDPGQPG-----PPG 1348
Query: 172 LSNLEEFPPVGSVPPGPTGTK 192
P + PPGP G +
Sbjct: 1349 -------PSGEAGPPGPPGKR 1362
Score = 43.5 bits (101), Expect = 0.001
Identities = 40/131 (30%), Positives = 51/131 (38%), Gaps = 23/131 (17%)
Query: 60 QSSRVLPQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRG 119
Q +R+ +GPP P G PG GGP GS GA+ + P + P
Sbjct: 521 QQARIALRGPPGPMGLTGR----PGPVGGP--GSSGAKGESGDPGPQGPRGVQGP----- 569
Query: 120 GRRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFP 179
PGP + G RG G +PG G + G P L P + + E
Sbjct: 570 -----PGPTGKPGKRGRPGADGGRGMPGEPGAK-GDRGFDGLPGL----PGDKGHRGERG 619
Query: 180 PVGSVPPGPTG 190
P G PPGP G
Sbjct: 620 PQG--PPGPPG 628
Score = 43.1 bits (100), Expect = 0.002
Identities = 40/146 (27%), Positives = 56/146 (38%), Gaps = 25/146 (17%)
Query: 67 QGPPTPAKTPG--------ASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARR 118
QGPP P PG +PG PG +G RG P + P
Sbjct: 567 QGPPGPTGKPGKRGRPGADGGRGMPGEPGA--KGDRGFDGLPGLPGDKGHRGERGP---- 620
Query: 119 GGRRRGPGPARERGGRGLEEGVSGESLPGAGGRR--LRGSGSPSRPSLTLSDPPNLSNLE 176
+ PGP + G RG + + LPG G R L G+P P P ++ ++
Sbjct: 621 ---QGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPG-----QPGMAGVD 672
Query: 177 EFP-PVGSVPPGPTGTKPSRRINPTP 201
P P G++ P P ++ NP P
Sbjct: 673 GPPGPKGNMGPQGEPGPPGQQGNPGP 698
Score = 42.7 bits (99), Expect = 0.002
Identities = 42/138 (30%), Positives = 56/138 (40%), Gaps = 17/138 (12%)
Query: 66 PQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRGP 125
P GPP PGA+ A GR G +G++G PP + + P + P
Sbjct: 1355 PPGPPGKRGPPGAAGA-EGRQG--EKGAKGEAGAEGPPGKTGPVGPQGPAGK-------P 1404
Query: 126 GPARERGGRGLEEGVSGESLPGAGGR--RLRGSGSPSRPSLTLSDPPNLSNLEEFPPVGS 183
GP G RG+ V + LPGA G+ G P P L DP + +G
Sbjct: 1405 GP---EGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLK-GDPGSKGEKGHPGLIGL 1460
Query: 184 V-PPGPTGTKPSRRINPT 200
+ PPG G K R + T
Sbjct: 1461 IGPPGEQGEKGDRGLPGT 1478
Score = 39.7 bits (91), Expect = 0.018
Identities = 62/232 (26%), Positives = 80/232 (34%), Gaps = 41/232 (17%)
Query: 67 QGPPTPAKTPGASAA--------LPGRPG-----GP--PRGSRGARSQLFPPTEAQSTAA 111
QGP PG A + G+PG GP PRGSRGAR P ++
Sbjct: 849 QGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGG 908
Query: 112 EAPLARRGGRRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPN 171
+ P PGP ERG +G + V PG G G P + L P +
Sbjct: 909 DGP----------PGPPGERGPQGPQGPV---GFPGPKG----PPGPPGKDGL----PGH 947
Query: 172 LSNLEEFPPVGSV-PPGPTG-TKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPS 229
E G PPGP G P T ER P + + +
Sbjct: 948 PGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGA 1007
Query: 230 ALDTSPWGLG---LPPGCRSLQEEREMLRKERSKQLQQSPTPTCPTPELGSP 278
D P G+ P G R ER + + + L+ P P +GSP
Sbjct: 1008 KGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSP 1059
Score = 34.3 bits (77), Expect = 0.75
Identities = 63/238 (26%), Positives = 84/238 (35%), Gaps = 41/238 (17%)
Query: 66 PQGPPTPAKTPGASA--ALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGR-R 122
P GP PA PG +PG G +G GA Q PP G +
Sbjct: 1394 PVGPQGPAGKPGPEGLRGIPGPVG--EQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGE 1451
Query: 123 RG----------PGPARERGGRGL-----EEGVSGE-SLPGAGGRRLRGSGSPSRPSLTL 166
+G PG E+G RGL G G+ +PG G G P P L
Sbjct: 1452 KGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAG----PLGPPGPPGLPG 1507
Query: 167 SDPPNLSNLEEFPPVG----SVPPGPTGT--KPSRRINPTPVSEERSLSKPKTCFTSPPI 220
P N P G S PGP G+ P I P P+ LS KT + +
Sbjct: 1508 PQGPK-GNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLPI-----LSSKKTRRHTEGM 1561
Query: 221 SCVPSSQPSALDTSPWGLGLPPGCRSLQEEREMLRKERSKQLQQSPTPTCPTPELGSP 278
+ + LD S + SL+++ E ++ Q +P TC +L P
Sbjct: 1562 QA--DADDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMG--TQTNPARTCKDLQLSHP 1615
Score = 33.1 bits (74), Expect = 1.7
Identities = 32/91 (35%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
Query: 66 PQGPPTPAKTPGASAALPGRPGGP-PRGSRG----ARSQLFPPTEAQSTAAEAPLARRG- 119
P GPP PGA A G G P P+G G A + FP A AP + G
Sbjct: 989 PPGPPGEQGLPGA-AGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGE 1047
Query: 120 GRRRGPGPARERGGRGLEEGVSGESLPGAGG 150
G + PGP G RG LPG G
Sbjct: 1048 GPQGPPGPVGSPGERGSAGTAGPIGLPGRPG 1078
Score = 33.1 bits (74), Expect = 1.7
Identities = 49/175 (28%), Positives = 57/175 (32%), Gaps = 49/175 (28%)
Query: 66 PQGPPT---PAKTPGASAALPGRPGGPPRGSR---------GARSQLFPPTEAQSTAAEA 113
P GPP P PG + G PG PRG + GAR PP
Sbjct: 1148 PPGPPGLQGPVGAPGIAGG-DGEPG--PRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPG 1204
Query: 114 PLARRG-----GRRRGPGPARERGGRGL--------------------EEGVSGES-LPG 147
P +G G PGP RG +G E+G GE+ PG
Sbjct: 1205 PPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPG 1264
Query: 148 AGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPPVGSVPPGPTGTKPSRRINPTPV 202
G G R + PP + PP PPG G K NP PV
Sbjct: 1265 PPGEAGVGGPKGERGEKGEAGPPGAAG----PPGAKGPPGDDGPKG----NPGPV 1311
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 48.5 bits (114), Expect = 4e-05
Identities = 47/142 (33%), Positives = 57/142 (40%), Gaps = 24/142 (16%)
Query: 66 PQGPPTPAKTPGASA--ALPGRPG--GPPR--GSRGARSQLFP--PTEAQSTAAEAPLAR 117
P GPP P G L G PG G P G GA+ + P P Q E L
Sbjct: 702 PMGPPGPKGDQGEKGPRGLTGEPGMRGLPGAVGEPGAKGAMGPAGPDGHQGPRGEQGLTG 761
Query: 118 RGGRRRGPGPARERGGRGLEEGVSGESLPGAGGR-RLRGS-GSPSR-------PSLTLSD 168
G R PGP+ + G GL + LPG GR ++G G+P + LT+
Sbjct: 762 MPGIRGPPGPSGDPGKPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSSMLTVPG 821
Query: 169 PPNLSNLEEFPPVGSVPPGPTG 190
PP PP PPGP G
Sbjct: 822 PPG-------PPGAMGPPGPPG 836
Score = 46.2 bits (108), Expect = 2e-04
Identities = 49/157 (31%), Positives = 57/157 (36%), Gaps = 36/157 (22%)
Query: 67 QGPPTPAKTPGASA--------ALPGRPGGPP-RGSRGARSQLFPPTEAQSTAAEAPLAR 117
+GPP P+ PG LPG PG P +G GA ++ + P
Sbjct: 766 RGPPGPSGDPGKPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSSMLTVPGPPGP 825
Query: 118 RG-----GRRRGPGPARERGGRGLEE--------------GVSGESLPGAGGRR-LRGSG 157
G G PGPA G G +E G G S+PG G R G G
Sbjct: 826 PGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGPPGEG 885
Query: 158 SPSRPSLTLSDPPN--LSNLEEFPPVGSVPPGPTGTK 192
P P PP LSN E F PPGP G K
Sbjct: 886 LPGPPG-----PPGSFLSNSETFLSGPPGPPGPPGPK 917
Score = 43.1 bits (100), Expect = 0.002
Identities = 45/145 (31%), Positives = 54/145 (37%), Gaps = 23/145 (15%)
Query: 66 PQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRGP 125
P GPP P PG S P P GPP G PP S +E L+ G P
Sbjct: 858 PPGPPGPRGPPGPSIPGPPGPRGPP--GEGLPGPPGPPGSFLSN-SETFLSGPPGPPGPP 914
Query: 126 GPARERG-----GRGLEEGVSGESLPGAG--GRRLRGSGSPSRPSLTLSDP-----PNLS 173
GP ++G G E+G+ G S G+ G L+G P P D P
Sbjct: 915 GPKGDQGPPGPRGHQGEQGLPGFSTSGSSSFGLNLQGPPGPPGPQGPKGDKGDPGVPGAL 974
Query: 174 NLEEFPPVG--------SVPPGPTG 190
+ P G S PPGP G
Sbjct: 975 GIPSGPSEGGSSSTMYVSGPPGPPG 999
Score = 33.1 bits (74), Expect = 1.7
Identities = 50/198 (25%), Positives = 70/198 (35%), Gaps = 24/198 (12%)
Query: 24 RSTQGSEDNAGEAAALSSLRALRKEFVPFLLNFLREQSSRVLPQGPPTPAKTPGAS---- 79
R G +G+ + LS A E +L+++ + GPP P PG S
Sbjct: 1108 RGPPGPPGASGDGSLLSLDYA---ELSSRILSYMSSSGISIGLPGPPGPPGLPGTSYEEL 1164
Query: 80 -AALPGR-------PGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRGPGPARER 131
+ L G P GPP G G ++ + ++ A PGP
Sbjct: 1165 LSLLRGSEFRGIVGPPGPP-GPPGIPGNVWSSISVEDLSSYLHTAGLSFIPGPPGPPGPP 1223
Query: 132 GGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPPVGSVPPGPTGT 191
G RG GVSG A S S ++ P++ + PP PPGP G
Sbjct: 1224 GPRG-PPGVSGALATYAA----ENSDSFRSELISYLTSPDVRSFIVGPPG---PPGPQGP 1275
Query: 192 KPSRRINPTPVSEERSLS 209
R+ T S R S
Sbjct: 1276 PGDSRLLSTDASHSRGSS 1293
>gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]
Length = 540
Score = 48.5 bits (114), Expect = 4e-05
Identities = 47/126 (37%), Positives = 55/126 (43%), Gaps = 27/126 (21%)
Query: 66 PQGPPTPAKTPGASAALPGRPGGPP-RGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRG 124
PQGPP P PGA L G PG P G +G + Q P E
Sbjct: 325 PQGPPGPPGIPGAKGEL-GLPGAPGIDGEKGPKGQKGDPGE------------------- 364
Query: 125 PGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPPVGSV 184
PGPA +G G E G+SG LPGA G L+G S S +L + +E PP
Sbjct: 365 PGPAGLKGEAG-EMGLSG--LPGADG--LKGEKGES-ASDSLQESLAQLIVEPGPPGPPG 418
Query: 185 PPGPTG 190
PPGP G
Sbjct: 419 PPGPMG 424
Score = 42.0 bits (97), Expect = 0.004
Identities = 35/131 (26%), Positives = 49/131 (37%), Gaps = 18/131 (13%)
Query: 60 QSSRVLPQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRG 119
Q + P+GPP P PG +PG+ +G G SQ PP + P G
Sbjct: 221 QDGEMGPKGPPGPKGEPG----VPGK-----KGDDGTPSQPGPPGPKGEPGSMGPRGENG 271
Query: 120 GRRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFP 179
PGP E G RG + PG G + ++ + + + + P
Sbjct: 272 VDG-APGPKGEPGHRGTDGAAGPRGAPGLKGEQ--------GDTVVIDYDGRILDALKGP 322
Query: 180 PVGSVPPGPTG 190
P PPGP G
Sbjct: 323 PGPQGPPGPPG 333
Score = 35.0 bits (79), Expect = 0.44
Identities = 38/138 (27%), Positives = 47/138 (34%), Gaps = 28/138 (20%)
Query: 71 TPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRG--------GRR 122
T + P PG PG RG G R PP ++ PL G G +
Sbjct: 108 TAREAPSECVCPPGPPGR--RGKPGRRGDPGPPGQSGRDGYPGPLGLDGKPGLPGPKGEK 165
Query: 123 RGPGPARERGGRGLEEGVSGESLPGAGGRR----------LRGSGSPSRPSLTLSDPPNL 172
PG RG +G + PG G R RG+ P+ P +P
Sbjct: 166 GAPGDFGPRGDQGQDGAAGPPGPPGPPGARGPPGDTGKDGPRGAQGPAGPK---GEP--- 219
Query: 173 SNLEEFPPVGSVPPGPTG 190
E P G PPGP G
Sbjct: 220 GQDGEMGPKG--PPGPKG 235
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 48.5 bits (114), Expect = 4e-05
Identities = 63/234 (26%), Positives = 82/234 (35%), Gaps = 23/234 (9%)
Query: 66 PQGPPTPAKTPGASAA-LPGRPGG-PPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRR 123
P+GPP PG+P G PP+G G +SQ PP + E P + G + +
Sbjct: 78 PEGPPPQGGNQSQGPPPRPGKPEGQPPQG--GNQSQGPPPRPGKP---EGPPPQGGNQSQ 132
Query: 124 GPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPPVG- 182
GP P R G+ E P GG + G P RP PP N + PP
Sbjct: 133 GPPP---RPGKP-------EGPPPQGGNQ--SQGPPPRPGKPEGPPPQGGNQSQGPPPHP 180
Query: 183 SVPPGPTGTKPSRRINPTPVSEERSLSKPKTCFTS---PPISCVPSSQPSALDTSPWGLG 239
P GP ++ P P + P+ S PP P PS P G
Sbjct: 181 GKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPP 240
Query: 240 LPPGCRSLQEEREMLRKERSKQLQQSPTPTCPTPELGSPLPSRTGSLTDEPADP 293
PG +E + +R + P P PLP G P P
Sbjct: 241 PHPGKPQGPPPQEGNKPQRPPPPGRPQGPPPPGGNPQQPLPPPAGKPQGPPPPP 294
Score = 48.1 bits (113), Expect = 5e-05
Identities = 68/248 (27%), Positives = 85/248 (34%), Gaps = 41/248 (16%)
Query: 66 PQGPPTPAKTPGASAALPGRPGG-PPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRG 124
PQG P +TP PG+P G PP+G G +SQ PP + E P + G + +G
Sbjct: 41 PQGGNQPQRTPPP----PGKPEGRPPQG--GNQSQGPPPRPGKP---EGPPPQGGNQSQG 91
Query: 125 PGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPPV--- 181
P P R G+ E P GG + G P RP PP N + PP
Sbjct: 92 PPP---RPGKP-------EGQPPQGGNQ--SQGPPPRPGKPEGPPPQGGNQSQGPPPRPG 139
Query: 182 ---------GSVPPGPTGTKPSRRINPTPVSEERSLSKPK---TCFTSPPISCVPSSQPS 229
G+ GP +P + P P +S P PP S P
Sbjct: 140 KPEGPPPQGGNQSQGPP-PRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPP 198
Query: 230 ALDTSPWGLGLPPGCRSLQEEREMLRKERSKQLQQSPTPTCPTPELGSPL--PSRTGSLT 287
P G P G Q K Q P P P G P P + G+
Sbjct: 199 PRPGKPEG-PPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKP 257
Query: 288 DEPADPAR 295
P P R
Sbjct: 258 QRPPPPGR 265
Score = 32.0 bits (71), Expect = 3.7
Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 66 PQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRGP 125
PQGPP PGRP GPP + L PP P +GGR P
Sbjct: 246 PQGPPPQEGNKPQRPPPPGRPQGPPPPGGNPQQPLPPPAGKPQGPPPPP---QGGRPHRP 302
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 48.1 bits (113), Expect = 5e-05
Identities = 38/103 (36%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 66 PQGPPTPAKTPGASA--ALPGRPGGPPR-GSRGARSQLFPPTEAQSTAAEAPLARRG--G 120
P+GPP PG +LPG PG P G G + + PP + P + G G
Sbjct: 1338 PKGPPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDG 1397
Query: 121 RRRGPGPARERGGRGL--EEGVSG-ESLPGAGGRRLRGSGSPS 160
+ PGPA E+G +G E G +G + LPG G+R SGSP+
Sbjct: 1398 KPGTPGPAGEKGNKGSKGEPGPAGSDGLPGLKGKR-GDSGSPA 1439
Score = 37.4 bits (85), Expect = 0.088
Identities = 49/163 (30%), Positives = 59/163 (36%), Gaps = 48/163 (29%)
Query: 68 GPPTPAKTPGASAALPGRPGGP----------------PRGSRGARSQL-FPPTEAQSTA 110
GPP PG LPG PG P P G +G L PP +
Sbjct: 1131 GPPGIRGPPG----LPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPG 1186
Query: 111 AEAPLARRG--------GRRRGPGPARERGGRGLE-----EGVSGESLPGAGGRR----L 153
A+ RG GR+ G A RG G+E G+ G +PG G R
Sbjct: 1187 AQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGS 1246
Query: 154 RGS-GSPSRPSLTLSDPPNLSNLEEFPPVGSV----PPGPTGT 191
RGS G+P P PP + GS+ P GP GT
Sbjct: 1247 RGSPGAPGPPG-----PPGSHVIGIKGDKGSMGHPGPKGPPGT 1284
Score = 35.4 bits (80), Expect = 0.34
Identities = 37/122 (30%), Positives = 46/122 (37%), Gaps = 16/122 (13%)
Query: 65 LPQGPPTPAKTPGASAALPGRPGGP----PRGSRGARSQLFPP--TEAQSTAAEAPLARR 118
LP P P + A+PG PG P RG+ G ++ P T L
Sbjct: 731 LPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGP 790
Query: 119 GGRRRGPGPARERG--GRGLEEGVSGESLPGAGGRR----LRG----SGSPSRPSLTLSD 168
G PGP E+G GR +E + LPG G + RG G P P L S
Sbjct: 791 RGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPGIPGLDRSG 850
Query: 169 PP 170
P
Sbjct: 851 FP 852
Score = 34.7 bits (78), Expect = 0.57
Identities = 37/110 (33%), Positives = 46/110 (41%), Gaps = 9/110 (8%)
Query: 84 GRPGGP-PRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRGPGPARERGGRGLEEGVSG 142
G PG P PRG+RG + PP S P + R G R PG +G +G E G G
Sbjct: 357 GTPGPPGPRGARGPQGPSGPPGVPGS-----PGSSRPGLRGAPGWPGLKGSKG-ERGRPG 410
Query: 143 ESLPGAGGRRLRGSGSPSRP-SLTLSDPPNLSNLEEFPPVGSVPPGPTGT 191
+ G G +GSP P S PP + PP PG G+
Sbjct: 411 KDAMGTPGSP-GCAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGS 459
Score = 34.7 bits (78), Expect = 0.57
Identities = 44/151 (29%), Positives = 56/151 (37%), Gaps = 29/151 (19%)
Query: 67 QGPPTPAKTPGASAALPGRPG-------GPP-----RGSRGARSQLFPPTEAQSTAAEAP 114
+GP P+ PG +PG PG G P +GS+G R + P +A T
Sbjct: 368 RGPQGPSGPPG----VPGSPGSSRPGLRGAPGWPGLKGSKGERGR--PGKDAMGTPGSPG 421
Query: 115 LARRGGRRRGPGPARERGGRGLEEGVSGE-SLPG-AGGRRLRG-SGSPSRPSLT------ 165
A G PGP G +G G+ LPG G + G G P L
Sbjct: 422 CAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGPKGEPGLLCTQCPY 481
Query: 166 LSDPPNLSNLEEFPPVGSVP--PGPTGTKPS 194
+ PP L L V +P G G K S
Sbjct: 482 IPGPPGLPGLPGLHGVKGIPGRQGAAGLKGS 512
Score = 34.7 bits (78), Expect = 0.57
Identities = 50/177 (28%), Positives = 58/177 (32%), Gaps = 48/177 (27%)
Query: 59 EQSSRVLPQGPPTPAKTPGASAA-----------LPGRPG----GPPRGSRGARSQLFPP 103
E+ L + PP P PGA A LPGR G PRG G PP
Sbjct: 1168 EKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPP 1227
Query: 104 -----TEAQSTAAEAPLARRG--GRRRGPGPARE-----RGGRGLEEGVSGESLPGAGG- 150
T P RG G PGP +G +G + PG G
Sbjct: 1228 GLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGD 1287
Query: 151 ----RRLRGSGSPSRPSLTLSDPPNLSNLEEFPPV----------GSV-PPGPTGTK 192
RL G+P P P + FP V GS+ PPGP G K
Sbjct: 1288 MGPPGRLGAPGTPGLPG-----PRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPK 1339
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 48.1 bits (113), Expect = 5e-05
Identities = 38/103 (36%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 66 PQGPPTPAKTPGASA--ALPGRPGGPPR-GSRGARSQLFPPTEAQSTAAEAPLARRG--G 120
P+GPP PG +LPG PG P G G + + PP + P + G G
Sbjct: 1338 PKGPPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDG 1397
Query: 121 RRRGPGPARERGGRGL--EEGVSG-ESLPGAGGRRLRGSGSPS 160
+ PGPA E+G +G E G +G + LPG G+R SGSP+
Sbjct: 1398 KPGTPGPAGEKGNKGSKGEPGPAGSDGLPGLKGKR-GDSGSPA 1439
Score = 37.4 bits (85), Expect = 0.088
Identities = 49/163 (30%), Positives = 59/163 (36%), Gaps = 48/163 (29%)
Query: 68 GPPTPAKTPGASAALPGRPGGP----------------PRGSRGARSQL-FPPTEAQSTA 110
GPP PG LPG PG P P G +G L PP +
Sbjct: 1131 GPPGIRGPPG----LPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPG 1186
Query: 111 AEAPLARRG--------GRRRGPGPARERGGRGLE-----EGVSGESLPGAGGRR----L 153
A+ RG GR+ G A RG G+E G+ G +PG G R
Sbjct: 1187 AQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGS 1246
Query: 154 RGS-GSPSRPSLTLSDPPNLSNLEEFPPVGSV----PPGPTGT 191
RGS G+P P PP + GS+ P GP GT
Sbjct: 1247 RGSPGAPGPPG-----PPGSHVIGIKGDKGSMGHPGPKGPPGT 1284
Score = 35.4 bits (80), Expect = 0.34
Identities = 37/122 (30%), Positives = 46/122 (37%), Gaps = 16/122 (13%)
Query: 65 LPQGPPTPAKTPGASAALPGRPGGP----PRGSRGARSQLFPP--TEAQSTAAEAPLARR 118
LP P P + A+PG PG P RG+ G ++ P T L
Sbjct: 731 LPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGP 790
Query: 119 GGRRRGPGPARERG--GRGLEEGVSGESLPGAGGRR----LRG----SGSPSRPSLTLSD 168
G PGP E+G GR +E + LPG G + RG G P P L S
Sbjct: 791 RGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPGIPGLDRSG 850
Query: 169 PP 170
P
Sbjct: 851 FP 852
Score = 34.7 bits (78), Expect = 0.57
Identities = 37/110 (33%), Positives = 46/110 (41%), Gaps = 9/110 (8%)
Query: 84 GRPGGP-PRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRGPGPARERGGRGLEEGVSG 142
G PG P PRG+RG + PP S P + R G R PG +G +G E G G
Sbjct: 357 GTPGPPGPRGARGPQGPSGPPGVPGS-----PGSSRPGLRGAPGWPGLKGSKG-ERGRPG 410
Query: 143 ESLPGAGGRRLRGSGSPSRP-SLTLSDPPNLSNLEEFPPVGSVPPGPTGT 191
+ G G +GSP P S PP + PP PG G+
Sbjct: 411 KDAMGTPGSP-GCAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGS 459
Score = 34.7 bits (78), Expect = 0.57
Identities = 44/151 (29%), Positives = 56/151 (37%), Gaps = 29/151 (19%)
Query: 67 QGPPTPAKTPGASAALPGRPG-------GPP-----RGSRGARSQLFPPTEAQSTAAEAP 114
+GP P+ PG +PG PG G P +GS+G R + P +A T
Sbjct: 368 RGPQGPSGPPG----VPGSPGSSRPGLRGAPGWPGLKGSKGERGR--PGKDAMGTPGSPG 421
Query: 115 LARRGGRRRGPGPARERGGRGLEEGVSGE-SLPG-AGGRRLRG-SGSPSRPSLT------ 165
A G PGP G +G G+ LPG G + G G P L
Sbjct: 422 CAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGPKGEPGLLCTQCPY 481
Query: 166 LSDPPNLSNLEEFPPVGSVP--PGPTGTKPS 194
+ PP L L V +P G G K S
Sbjct: 482 IPGPPGLPGLPGLHGVKGIPGRQGAAGLKGS 512
Score = 34.7 bits (78), Expect = 0.57
Identities = 50/177 (28%), Positives = 58/177 (32%), Gaps = 48/177 (27%)
Query: 59 EQSSRVLPQGPPTPAKTPGASAA-----------LPGRPG----GPPRGSRGARSQLFPP 103
E+ L + PP P PGA A LPGR G PRG G PP
Sbjct: 1168 EKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPP 1227
Query: 104 -----TEAQSTAAEAPLARRG--GRRRGPGPARE-----RGGRGLEEGVSGESLPGAGG- 150
T P RG G PGP +G +G + PG G
Sbjct: 1228 GLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGD 1287
Query: 151 ----RRLRGSGSPSRPSLTLSDPPNLSNLEEFPPV----------GSV-PPGPTGTK 192
RL G+P P P + FP V GS+ PPGP G K
Sbjct: 1288 MGPPGRLGAPGTPGLPG-----PRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPK 1339
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 48.1 bits (113), Expect = 5e-05
Identities = 38/103 (36%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 66 PQGPPTPAKTPGASA--ALPGRPGGPPR-GSRGARSQLFPPTEAQSTAAEAPLARRG--G 120
P+GPP PG +LPG PG P G G + + PP + P + G G
Sbjct: 1338 PKGPPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDG 1397
Query: 121 RRRGPGPARERGGRGL--EEGVSG-ESLPGAGGRRLRGSGSPS 160
+ PGPA E+G +G E G +G + LPG G+R SGSP+
Sbjct: 1398 KPGTPGPAGEKGNKGSKGEPGPAGSDGLPGLKGKR-GDSGSPA 1439
Score = 37.4 bits (85), Expect = 0.088
Identities = 49/163 (30%), Positives = 59/163 (36%), Gaps = 48/163 (29%)
Query: 68 GPPTPAKTPGASAALPGRPGGP----------------PRGSRGARSQL-FPPTEAQSTA 110
GPP PG LPG PG P P G +G L PP +
Sbjct: 1131 GPPGIRGPPG----LPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPG 1186
Query: 111 AEAPLARRG--------GRRRGPGPARERGGRGLE-----EGVSGESLPGAGGRR----L 153
A+ RG GR+ G A RG G+E G+ G +PG G R
Sbjct: 1187 AQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGS 1246
Query: 154 RGS-GSPSRPSLTLSDPPNLSNLEEFPPVGSV----PPGPTGT 191
RGS G+P P PP + GS+ P GP GT
Sbjct: 1247 RGSPGAPGPPG-----PPGSHVIGIKGDKGSMGHPGPKGPPGT 1284
Score = 35.4 bits (80), Expect = 0.34
Identities = 37/122 (30%), Positives = 46/122 (37%), Gaps = 16/122 (13%)
Query: 65 LPQGPPTPAKTPGASAALPGRPGGP----PRGSRGARSQLFPP--TEAQSTAAEAPLARR 118
LP P P + A+PG PG P RG+ G ++ P T L
Sbjct: 731 LPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGP 790
Query: 119 GGRRRGPGPARERG--GRGLEEGVSGESLPGAGGRR----LRG----SGSPSRPSLTLSD 168
G PGP E+G GR +E + LPG G + RG G P P L S
Sbjct: 791 RGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPGIPGLDRSG 850
Query: 169 PP 170
P
Sbjct: 851 FP 852
Score = 34.7 bits (78), Expect = 0.57
Identities = 37/110 (33%), Positives = 46/110 (41%), Gaps = 9/110 (8%)
Query: 84 GRPGGP-PRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRGPGPARERGGRGLEEGVSG 142
G PG P PRG+RG + PP S P + R G R PG +G +G E G G
Sbjct: 357 GTPGPPGPRGARGPQGPSGPPGVPGS-----PGSSRPGLRGAPGWPGLKGSKG-ERGRPG 410
Query: 143 ESLPGAGGRRLRGSGSPSRP-SLTLSDPPNLSNLEEFPPVGSVPPGPTGT 191
+ G G +GSP P S PP + PP PG G+
Sbjct: 411 KDAMGTPGSP-GCAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGS 459
Score = 34.7 bits (78), Expect = 0.57
Identities = 44/151 (29%), Positives = 56/151 (37%), Gaps = 29/151 (19%)
Query: 67 QGPPTPAKTPGASAALPGRPG-------GPP-----RGSRGARSQLFPPTEAQSTAAEAP 114
+GP P+ PG +PG PG G P +GS+G R + P +A T
Sbjct: 368 RGPQGPSGPPG----VPGSPGSSRPGLRGAPGWPGLKGSKGERGR--PGKDAMGTPGSPG 421
Query: 115 LARRGGRRRGPGPARERGGRGLEEGVSGE-SLPG-AGGRRLRG-SGSPSRPSLT------ 165
A G PGP G +G G+ LPG G + G G P L
Sbjct: 422 CAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGPKGEPGLLCTQCPY 481
Query: 166 LSDPPNLSNLEEFPPVGSVP--PGPTGTKPS 194
+ PP L L V +P G G K S
Sbjct: 482 IPGPPGLPGLPGLHGVKGIPGRQGAAGLKGS 512
Score = 34.7 bits (78), Expect = 0.57
Identities = 50/177 (28%), Positives = 58/177 (32%), Gaps = 48/177 (27%)
Query: 59 EQSSRVLPQGPPTPAKTPGASAA-----------LPGRPG----GPPRGSRGARSQLFPP 103
E+ L + PP P PGA A LPGR G PRG G PP
Sbjct: 1168 EKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPP 1227
Query: 104 -----TEAQSTAAEAPLARRG--GRRRGPGPARE-----RGGRGLEEGVSGESLPGAGG- 150
T P RG G PGP +G +G + PG G
Sbjct: 1228 GLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGD 1287
Query: 151 ----RRLRGSGSPSRPSLTLSDPPNLSNLEEFPPV----------GSV-PPGPTGTK 192
RL G+P P P + FP V GS+ PPGP G K
Sbjct: 1288 MGPPGRLGAPGTPGLPG-----PRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPK 1339
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 48.1 bits (113), Expect = 5e-05
Identities = 50/192 (26%), Positives = 65/192 (33%), Gaps = 24/192 (12%)
Query: 66 PQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRG-----G 120
PQGPP PG+P GPP +RS PP + Q + +G G
Sbjct: 57 PQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPG 116
Query: 121 RRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFP- 179
+ +GP P +G + P G + P +P PP N + P
Sbjct: 117 KPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQ---GPPPQGGNQPQGPP 173
Query: 180 -----PVGSVPPG---PTGTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPSAL 231
P G P G P G P + P ++S S SPP P P
Sbjct: 174 PPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSS-----QSPPGK--PQGPPPQG 226
Query: 232 DTSPWGLGLPPG 243
P G PPG
Sbjct: 227 GNQPQGPPPPPG 238
Score = 39.3 bits (90), Expect = 0.023
Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 9/98 (9%)
Query: 66 PQGPPTPAKTPGASAALPGRPGGPP-RGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRG 124
PQGPP PG+P GPP +G ++S PP + Q P + G +G
Sbjct: 240 PQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQ-----GPPQQEGNNPQG 294
Query: 125 PGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRP 162
P P GG + P R +G G PSRP
Sbjct: 295 PPP--PAGGNPQQPQAPPAGQPQGPPRPPQG-GRPSRP 329
Score = 38.5 bits (88), Expect = 0.040
Identities = 54/252 (21%), Positives = 81/252 (32%), Gaps = 31/252 (12%)
Query: 58 REQSSRVLPQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLAR 117
+E+S ++ P P+ G P P G P+G PP + + P
Sbjct: 25 QEESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQG---------PPPQGGNKPQGPP--- 72
Query: 118 RGGRRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEE 177
G+ +GP P ++ + P GG + G P P PP N +
Sbjct: 73 PPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGN--QPQGPPPPPGKPQGPPPQGGNRPQ 130
Query: 178 FPPVGSVPPGPTGTKPSRRINPTPVSEERSL-----SKPKTCFTSPPISCVPSSQPSALD 232
PP P GP R +P + + ++P+ PP P P
Sbjct: 131 GPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQ---GPPPPPGKPQGPPPQGG 187
Query: 233 TSPWG-------LGLPPGCRSLQEEREMLRKERSKQLQQSPTPTCPTPELGSPL--PSRT 283
P G G PP + + K + Q P P P G P P +
Sbjct: 188 KKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG 247
Query: 284 GSLTDEPADPAR 295
G+ P P +
Sbjct: 248 GNKPQGPPPPGK 259
Score = 35.4 bits (80), Expect = 0.34
Identities = 36/134 (26%), Positives = 51/134 (38%), Gaps = 39/134 (29%)
Query: 66 PQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRGP 125
PQGPP P PG+P GPP +G PP + + P A+ G + +
Sbjct: 230 PQGPPPP----------PGKPQGPP--PQGGNKPQGPPPPGK---PQGPPAQGGSKSQSA 274
Query: 126 -GPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPPVG-- 182
P + G +EG + + P G G+P +P + PP G
Sbjct: 275 RSPPGKPQGPPQQEGNNPQGPPPPAG------GNPQQP--------------QAPPAGQP 314
Query: 183 -SVPPGPTGTKPSR 195
P P G +PSR
Sbjct: 315 QGPPRPPQGGRPSR 328
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 47.4 bits (111), Expect = 9e-05
Identities = 44/144 (30%), Positives = 57/144 (39%), Gaps = 25/144 (17%)
Query: 67 QGPPTPAKTPG--------ASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARR 118
QGPP PA PG + +PG+ G P+G RG P E P
Sbjct: 597 QGPPGPAGKPGRRGRAGSDGARGMPGQTG--PKGDRGFDGLAGLPGEKGHRGDPGPSGP- 653
Query: 119 GGRRRGPGPARERGGRGLEEGVSGESLPGAGGRR--LRGSGSPSRPSLTLSDPPNLSNLE 176
PGP + G RG + V LPG G R L G P P PP ++ ++
Sbjct: 654 ------PGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPG-----PPGVTGMD 702
Query: 177 EFP-PVGSVPPGPTGTKPSRRINP 199
P P G+V P P ++ NP
Sbjct: 703 GQPGPKGNVGPQGEPGPPGQQGNP 726
Score = 46.2 bits (108), Expect = 2e-04
Identities = 45/137 (32%), Positives = 56/137 (40%), Gaps = 17/137 (12%)
Query: 66 PQGPPTPAKTPGASAALPGRPGGP-PRGSRGARSQLFPPTEAQSTAAEAPLARRG----- 119
P+G P P PG PG PG P P G G E T + P G
Sbjct: 1334 PKGSPGPVGFPGD----PGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPP 1389
Query: 120 GRRRGPGPARERGGRGLEEGVSGES-LPGAGGRR--LRGSGSPSRPSLT-LSDPPNLSNL 175
G+R PGPA G +G E+G GE+ L G G+ + G+P +P L P
Sbjct: 1390 GKRGPPGPAGPEGRQG-EKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGE 1448
Query: 176 EEFP--PVGSVPPGPTG 190
+ P P PPGP G
Sbjct: 1449 QGLPGSPGPDGPPGPMG 1465
Score = 45.8 bits (107), Expect = 2e-04
Identities = 48/158 (30%), Positives = 54/158 (34%), Gaps = 19/158 (12%)
Query: 66 PQGPPTPAKTPGA--------SAALPGRPG--GPP--RGSRGARSQLFPPTEAQSTAAEA 113
PQGPP PGA A PG PG GPP +G RG + + P A +
Sbjct: 1268 PQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKG 1327
Query: 114 PLARRGGRRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLS 173
P G + PGP G + G GE P G P T S P
Sbjct: 1328 PPGD-DGPKGSPGPVGFPG----DPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGE 1382
Query: 174 NLEEFPPVGSVPPGPTGTKPSRRINPTPVSEERSLSKP 211
PP PPGP G P R E L P
Sbjct: 1383 PGPSGPPGKRGPPGPAG--PEGRQGEKGAKGEAGLEGP 1418
Score = 45.4 bits (106), Expect = 3e-04
Identities = 64/255 (25%), Positives = 82/255 (32%), Gaps = 61/255 (23%)
Query: 66 PQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRG--GRRR 123
P+GPP P G LPG PG RG G + + PP + P G G R
Sbjct: 962 PKGPPGPPGKDG----LPGHPG--QRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERG 1015
Query: 124 GPGPARERGGRGL-----EEGVSGE----------------------SLPG-AGGRRLRG 155
PGP G +GL +EG G+ LPG G L+G
Sbjct: 1016 HPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKG 1075
Query: 156 SGSPSRPSLTLSDPPNLSNLEEFPPVG-------SVPPGPTGTK--PSRRINPTPVSEER 206
+ P P P P+G PPGP G K P + P +
Sbjct: 1076 NEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDG 1135
Query: 207 SLSKPKTCFTSPPISCVPSSQPSALDTSPWGLGLPPGCRSLQEEREMLRKERSKQLQQSP 266
+ P+ P D +G P S ++ E Q P
Sbjct: 1136 LQGPVGLPGPAGPVG------PPGEDGDKGEIGEPGQKGSKGDKGE----------QGPP 1179
Query: 267 TPTCPTPELGSPLPS 281
PT P +G P PS
Sbjct: 1180 GPTGPQGPIGQPGPS 1194
Score = 45.1 bits (105), Expect = 4e-04
Identities = 46/138 (33%), Positives = 58/138 (42%), Gaps = 25/138 (18%)
Query: 66 PQGPPTPAKTPG----ASAA----LPGRPG--GP--PRGSRGARSQLFPPTEAQSTAAEA 113
P GPP PA +PG A AA +PGRPG GP P G +GA + P A +
Sbjct: 1079 PPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQG 1138
Query: 114 PLARRGGRRRGP-GPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNL 172
P+ G GP GP E G +G E G G+ G + +G P+ P + P
Sbjct: 1139 PVGLPG--PAGPVGPPGEDGDKG-EIGEPGQK-GSKGDKGEQGPPGPTGPQGPIGQPG-- 1192
Query: 173 SNLEEFPPVGSVPPGPTG 190
P PGP G
Sbjct: 1193 ------PSGADGEPGPRG 1204
Score = 45.1 bits (105), Expect = 4e-04
Identities = 48/157 (30%), Positives = 59/157 (37%), Gaps = 45/157 (28%)
Query: 66 PQGPPTPAKTPGASAALPGRPG--GP--PRGSRGARSQLFPPTEAQSTAAEAPLARRGGR 121
P GPP P PG LPG G GP +G G + PP E G
Sbjct: 1457 PDGPPGPMGPPG----LPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEK----------GD 1502
Query: 122 RRGPGPARERGGRGLEEGVSGES----------LPG-AGGRRLRGSGSPSRPSLTLSDPP 170
R PGP G +G E+G++G S LPG G + +GS P+ P P
Sbjct: 1503 RGLPGPQGSSGPKG-EQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGHPG 1561
Query: 171 NLSNLEEFPPVGSVPPGPTGTKPSRRINPTPVSEERS 207
PPGP G P I P P+ R+
Sbjct: 1562 --------------PPGPPG-PPGEVIQPLPIQASRT 1583
Score = 41.6 bits (96), Expect = 0.005
Identities = 37/128 (28%), Positives = 51/128 (39%), Gaps = 32/128 (25%)
Query: 66 PQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRGP 125
P+GPP P PG + + G+PG P+G+ G + + PP + + A+ P
Sbjct: 686 PKGPPGPPGPPGVT-GMDGQPG--PKGNVGPQGEPGPPGQQGNPGAQGL----------P 732
Query: 126 GPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPP---VG 182
GP G G + + LPG G G P P +E PP G
Sbjct: 733 GPQGAIGPPGEKGPLGKPGLPGMPG----ADGPPGHPG------------KEGPPGEKGG 776
Query: 183 SVPPGPTG 190
PPGP G
Sbjct: 777 QGPPGPQG 784
Score = 38.5 bits (88), Expect = 0.040
Identities = 65/236 (27%), Positives = 81/236 (34%), Gaps = 49/236 (20%)
Query: 67 QGPPTPAKTPGASAA--------LPGRPG-----GP--PRGSRGARSQLFPPTEAQSTAA 111
QGP PG A PG+PG GP PRG RG R P ++
Sbjct: 879 QGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGG 938
Query: 112 EAPLARRGGRRRGP----GPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLS 167
+ P G RGP GP G +G + LPG G+R G T
Sbjct: 939 DGPAGPPG--ERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQR----GETGFQGKT-- 990
Query: 168 DPPNLSNLEEFPPVGSVPPGPTG-TKP-SRRINPTPVSEERSLSKPKTCFTSPPISCVPS 225
PP PP P GPTG T P R +P P P +
Sbjct: 991 GPPG-------PPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPG----------LAG 1033
Query: 226 SQPSALDTSPWGL---GLPPGCRSLQEEREMLRKERSKQLQQSPTPTCPTPELGSP 278
+ + D P GL PPG R +R + + L+ + P P GSP
Sbjct: 1034 KEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSP 1089
Score = 37.7 bits (86), Expect = 0.068
Identities = 45/146 (30%), Positives = 56/146 (38%), Gaps = 32/146 (21%)
Query: 67 QGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRG-----GR 121
+GPP G A PG+PG P G RG + S + P G G
Sbjct: 1416 EGPPGKTGPIGPQGA-PGKPG--PDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGL 1472
Query: 122 RRGPGPARERGGRGL--------EEGVSGE-SLPG----AGGRRLRGSGSPSRPSLTLSD 168
+ GP E+G GL E+G G+ LPG +G + +G PS P
Sbjct: 1473 KGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPI----G 1528
Query: 169 PPNLSNLEEFPPVGSVPPGPTGTKPS 194
PP PP PPGP G K S
Sbjct: 1529 PPG-------PPGLPGPPGPKGAKGS 1547
Score = 36.6 bits (83), Expect = 0.15
Identities = 46/156 (29%), Positives = 55/156 (35%), Gaps = 34/156 (21%)
Query: 66 PQGP---PTPAKTPGASA--ALPGRPG-----GPP-----RGSRGARSQLFPPTEAQSTA 110
PQGP P P GA L G G G P G +G R ++ PP
Sbjct: 782 PQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDG 841
Query: 111 AEAPLARRGGRRRGPGPARERGGRGLEEGVSG----------------ESLPGAGGRRLR 154
E P RGG PGP G +G + GV G PGA G +
Sbjct: 842 PEGPKG-RGGPNGDPGPLGPPGEKG-KLGVPGLPGYPGRQGPKGSIGFPGFPGANGEK-G 898
Query: 155 GSGSPSRPSLTLSDPPNLSNLEEFPPVGSVPPGPTG 190
G G+P +P P E P + PGP G
Sbjct: 899 GRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKG 934
Score = 31.6 bits (70), Expect = 4.9
Identities = 45/169 (26%), Positives = 56/169 (33%), Gaps = 43/169 (25%)
Query: 67 QGPPTPAKTPGASAALPGRPG-----------GPPRGSRGARSQLFPPTEAQSTAAEAPL 115
+GPP PGA LPG PG G GS+G ++AQ+ +A L
Sbjct: 498 RGPPGRPGLPGADG-LPGPPGTMLMLPFRFGGGGDAGSKGPMVSA-QESQAQAILQQARL 555
Query: 116 ARRG--------------------GRRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRG 155
A RG G + PG +G RG++ PG G R
Sbjct: 556 ALRGPAGPMGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRG-RAGS 614
Query: 156 SGSPSRPSLT-LSDPPNLSNLEEFP--------PVGSVPPGPTGTKPSR 195
G+ P T L P P S PPGP G R
Sbjct: 615 DGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGER 663
>gi|150418009 transforming, acidic coiled-coil containing protein 2
isoform a [Homo sapiens]
Length = 2948
Score = 47.0 bits (110), Expect = 1e-04
Identities = 72/300 (24%), Positives = 103/300 (34%), Gaps = 31/300 (10%)
Query: 59 EQSSRVLPQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPP-----TEAQSTAAEA 113
EQS V P PP P + PG P PP + S PP + +
Sbjct: 504 EQSHEVQPGVPPPPLPKEQSHEVQPGAP-PPPLPKAPSESARGPPGPTDGAKVHEDSTSP 562
Query: 114 PLARRGGRRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLS 173
+A+ G R G P + +G +L G + P LS P + +
Sbjct: 563 AVAKEGSRSPGDSPGGKEEAPEPPDGGDPGNLQGEDSQAFSSKRDPEVGKDELSKPSSDA 622
Query: 174 NLEEFPPVGSV-PPGPTGTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVP--SSQPSA 230
+ P S PP G + + + S K P + VP + +P+
Sbjct: 623 ESRDHPSSHSAQPPRKGGAGHTDGPHSQTAEADASGLPHKLGEEDPVLPPVPDGAGEPTV 682
Query: 231 LDTSPW-GLGLPPGCRSLQEEREML-RKERSKQLQQSPTPTCPTPELGSPLPSRTGSLT- 287
+ + W G GL P C + RE L R E L+ + PTP ++ G T
Sbjct: 683 PEGAIWEGSGLQPKCPDTLQSREGLGRMESFLTLESEKSDFPPTPVAEVAPKAQEGESTL 742
Query: 288 -----------------DEPADPARVSSRQRLELVALVYSSCIAENLVPNLFLELFFVFQ 330
D+P PA +SRQ E A V ENL +L L + Q
Sbjct: 743 EIRKMGSCDGEGLLTSPDQPRGPACDASRQ--EFHAGVPHPPQGENLAADLGLTALILDQ 800
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 47.0 bits (110), Expect = 1e-04
Identities = 40/146 (27%), Positives = 55/146 (37%), Gaps = 15/146 (10%)
Query: 66 PQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRGP 125
PQGPP PG+P GPP +RS PP + Q + GG+ +GP
Sbjct: 57 PQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQ------GGKPQGP 110
Query: 126 GPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPPVGSVP 185
P +G + P GG + + + SP P P N P G P
Sbjct: 111 PPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSP--PGKPQGPPQQEGN----NPQG--P 162
Query: 186 PGPTGTKPSRRINPTPVSEERSLSKP 211
P P G P + P P + + +P
Sbjct: 163 PPPAGGNPQQPQAP-PAGQPQGPPRP 187
Score = 32.3 bits (72), Expect = 2.8
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 66 PQGPPTPAK-TPGASAALP-GRPGGPPRGSRGAR 97
PQGPP PA P A P G+P GPPR +G R
Sbjct: 159 PQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGR 192
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 46.6 bits (109), Expect = 1e-04
Identities = 59/234 (25%), Positives = 77/234 (32%), Gaps = 54/234 (23%)
Query: 66 PQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRGP 125
P P TPA P LP P PP S P TE + A P
Sbjct: 512 PAAPSTPAPPPAVPKELPAPPAPPP------ASAPTPETEPEEPAQAPPAQSTPTPGVAA 565
Query: 126 GPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPPVGSVP 185
P GG G + + G P PS +PP EE PP + P
Sbjct: 566 APTLVSGG--------GSTSSTSSGSFEASPVEPQLPSKEGPEPP-----EEVPP-PTTP 611
Query: 186 PGPTGTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPSALDTSPWGLGLPPGCR 245
P P I PT + L PK + LPP +
Sbjct: 612 PVPKVEPKGDGIGPTRQPPSQGLGYPK-----------------------YQKSLPPRFQ 648
Query: 246 SLQEEREMLRKERSKQLQQ------SPTPTCPTPELGSPLPSRTGSLTDEPADP 293
Q+E ++L++++ Q QQ PTP P+P P P G++ A P
Sbjct: 649 RQQQE-QLLKQQQQHQWQQHQQGSAPPTPVPPSP----PQPVTLGAVPAPQAPP 697
Score = 43.5 bits (101), Expect = 0.001
Identities = 46/138 (33%), Positives = 56/138 (40%), Gaps = 16/138 (11%)
Query: 67 QGPPTPAKTPGASAALPGRPGGPPRG----SRGARSQLFPPTEAQSTAAEAPLARRGGRR 122
+ PP TP A G GG G SRG SQ +S +++ P R RR
Sbjct: 1339 EAPPPVLLTPKAVGTPGGGGGGAVPGISAMSRGDLSQRAKDLSKRSFSSQRPGMERQNRR 1398
Query: 123 RGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSP-SRPS-LTLSDPPNLSNLEEFPP 180
PGP + G G G G G GGR G G S PS S PP EE PP
Sbjct: 1399 --PGPGGKAGSSGSSSGGGG---GGPGGRTGPGRGDKRSWPSPKNRSRPP-----EERPP 1448
Query: 181 VGSVPPGPTGTKPSRRIN 198
+PP P + R++
Sbjct: 1449 GLPLPPPPPSSSAVFRLD 1466
Score = 42.0 bits (97), Expect = 0.004
Identities = 46/156 (29%), Positives = 54/156 (34%), Gaps = 27/156 (17%)
Query: 66 PQGPPTPAKTPGASAALPG----------RPGGPPRGSRGARSQLFP-----PTEAQSTA 110
P PP P + G R G GS S L P PT + T
Sbjct: 1073 PNHPPAPRGRTASETRSEGSEYEEIPKRRRQRGSETGSETHESDLAPSDKEAPTPKEGTL 1132
Query: 111 AEAPLARRG-GRRRGPGPAR--ERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLS 167
+ PLA G P PAR RGGR G RR RG G P
Sbjct: 1133 TQVPLAPPPPGAPPSPAPARFTARGGRVFTPR-------GVPSRRGRGGGRPPPQVCPGW 1185
Query: 168 DPPNLSNLEEFPPVGSVPPGPTGTKPSRRINPTPVS 203
PP S + PP G +PP K ++ P P+S
Sbjct: 1186 SPPAKSLAPKKPPTGPLPPSKEPLK--EKLIPGPLS 1219
Score = 33.5 bits (75), Expect = 1.3
Identities = 45/169 (26%), Positives = 59/169 (34%), Gaps = 44/169 (26%)
Query: 68 GPPT---PAKTPGASAALPGRPGGPPRGSRGARSQLFPPTE-------AQSTAAEA---P 114
GPP P + PG P PP A+ Q PP + AQ T EA P
Sbjct: 848 GPPISRFPLEEPG-----PRPLPWPPGSDEVAKIQTPPPKKEPPKEETAQLTGPEAGRKP 902
Query: 115 LARRGGRRRGPGPARERGGRGLEEGVSGESLPGAGGRRL--RGSGSPSRPSLTLSDPPNL 172
G +GP P R G PG+ R + G+P R + + PP
Sbjct: 903 ARGVGSGGQGPPPPRRESRTETRWGPR----PGSSRRGIPPEEPGAPPRRAGPIKKPPPP 958
Query: 173 SNLEEFPP----VGSVPP----------------GPTGTKPSRRINPTP 201
+ +EE PP G P GP T P+ ++P P
Sbjct: 959 TKVEELPPKPLEQGDETPKPPKPDPLKITKGKLGGPKETPPNGNLSPAP 1007
Score = 32.7 bits (73), Expect = 2.2
Identities = 44/182 (24%), Positives = 59/182 (32%), Gaps = 27/182 (14%)
Query: 66 PQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRGP 125
P GP P+K P +PG RG S + G G
Sbjct: 1198 PTGPLPPSKEPLKEKLIPGPLSPVARGGSNGGSNV-------------------GMEDGE 1238
Query: 126 GPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPPVGSVP 185
P R R GR ++ R GS +PSLTL P + EE +V
Sbjct: 1239 RPRRRRHGRAQQQDKPPRFRRLKQERENAARGSEGKPSLTL--PASAPGPEEALTTVTVA 1296
Query: 186 PGP----TGTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPSALDTSPWGLGLP 241
P P + N +EE + + FTS + P L +P +G P
Sbjct: 1297 PAPRRAAAKSPDLSNQNSDQANEEWETASESSDFTSERRGDKEAPPPVLL--TPKAVGTP 1354
Query: 242 PG 243
G
Sbjct: 1355 GG 1356
Score = 32.7 bits (73), Expect = 2.2
Identities = 34/135 (25%), Positives = 50/135 (37%), Gaps = 21/135 (15%)
Query: 92 GSRGARSQLFPPTEAQSTAAEAPLARR-----GGRRRGPGPARERGGRGLEEGVSGESLP 146
G+ ++S S + P ++R G + GP + GG V E P
Sbjct: 1643 GTEMSQSDSGVDLSGDSQVSSGPCSQRSSPDGGLKGAAEGPPKRPGGSSPLNAVPCEGPP 1702
Query: 147 GAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPPVGSVPPGPTGTKPSRRIN----PTPV 202
G S P RP P+ + +E P +PPGP GT+ S+R + P P+
Sbjct: 1703 G--------SEPPRRPP----PAPHDGDRKELPREQPLPPGPIGTERSQRTDRGTEPGPI 1750
Query: 203 SEERSLSKPKTCFTS 217
P TS
Sbjct: 1751 RPSHRPGPPVQFGTS 1765
Score = 31.6 bits (70), Expect = 4.9
Identities = 33/124 (26%), Positives = 44/124 (35%), Gaps = 29/124 (23%)
Query: 67 QGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRGPG 126
QGPP P + RPG RG PP E AP R G ++ P
Sbjct: 911 QGPPPPRRESRTETRWGPRPGSSRRG--------IPPEE-----PGAPPRRAGPIKKPPP 957
Query: 127 PAR--ERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPPVGSV 184
P + E + LE+ G+ P P +P L +E PP G++
Sbjct: 958 PTKVEELPPKPLEQ---GDETP-----------KPPKPDPLKITKGKLGGPKETPPNGNL 1003
Query: 185 PPGP 188
P P
Sbjct: 1004 SPAP 1007
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 46.2 bits (108), Expect = 2e-04
Identities = 51/158 (32%), Positives = 60/158 (37%), Gaps = 37/158 (23%)
Query: 67 QGPPTPAKTPGASAALPGRPG--GPP-----RGSRGARSQLFPPTEAQSTAAEAPLARRG 119
+G P PA PG+ A PG PG G P RG G+R + PP A P RG
Sbjct: 1070 RGDPGPAGLPGSQGA-PGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGPQGPRG 1128
Query: 120 -----GRRRGPGPARERGGRGLE-----EGVSGE----SLPGAGGRRLRGSGSPSRPSLT 165
G R G RG GL+ G +GE +PG G RG P PS
Sbjct: 1129 DKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGP--RGPPGPVGPSGK 1186
Query: 166 LSDPPNLSNL-------------EEFPPVGSVPPGPTG 190
+P L + E PP PPGP G
Sbjct: 1187 EGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPG 1224
Score = 40.0 bits (92), Expect = 0.014
Identities = 47/167 (28%), Positives = 60/167 (35%), Gaps = 27/167 (16%)
Query: 28 GSEDNAGEAAALSSLRALRKEFVPFLLNFLREQSSRVLPQGPPTPAKTPGASAALPGRPG 87
GS+ AG + ++ L +P + R+ PQG P G +PG+PG
Sbjct: 318 GSKGEAGPTGPMGAMGPLGPRGMP-------GERGRLGPQGAPGQRGAHG----MPGKPG 366
Query: 88 GPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRGPGPARERGGRGLEEGVSGESLPG 147
P G G P P RG GP +RG G V LPG
Sbjct: 367 --PMGPLGIPGSSGFPGNPGMKGEAGPTGARGPE----GPQGQRGETGPPGPVGSPGLPG 420
Query: 148 AGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPPVGSVPPGPTGTKPS 194
A G G+P T S P S PP + PPG G + S
Sbjct: 421 AIGT----DGTPGAKGPTGS--PGTSG----PPGSAGPPGSPGPQGS 457
Score = 38.5 bits (88), Expect = 0.040
Identities = 47/139 (33%), Positives = 54/139 (38%), Gaps = 21/139 (15%)
Query: 68 GPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRG--GRRRGP 125
GP A +PG P P G P G +G R PP +T R G G P
Sbjct: 876 GPQGLAGSPG-----PHGPNGVP-GLKGGRGTQGPPG---ATGFPGSAGRVGPPGPAGAP 926
Query: 126 GPARERGGRGLE--EGVSGESLPGAGGR-RLRGSGSPSRPSLTLSDPPNLSNLEEFPPVG 182
GPA G G E G+ G+ PG+ GR RG P DP E+ P
Sbjct: 927 GPAGPLGEPGKEGPPGLRGD--PGSHGRVGDRGPAGPPGGPGDKGDPG-----EDGQPGP 979
Query: 183 SVPPGPTGTKPSRRINPTP 201
PPGP GT R I P
Sbjct: 980 DGPPGPAGTTGQRGIVGMP 998
Score = 37.0 bits (84), Expect = 0.12
Identities = 42/135 (31%), Positives = 54/135 (40%), Gaps = 23/135 (17%)
Query: 68 GPPTPAKTPGASAALPGRPG--GPP--RGSRGARSQLFPPTEAQSTAAEAPLARRG---- 119
GPP PA PG + L G PG GPP RG G+ ++ A G
Sbjct: 918 GPPGPAGAPGPAGPL-GEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQ 976
Query: 120 -GRRRGPGPARERGGRGL--EEGVSGE-SLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNL 175
G PGPA G RG+ G GE +PG G +G+P + P +
Sbjct: 977 PGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPG----PAGTPGKVG------PTGATG 1026
Query: 176 EEFPPVGSVPPGPTG 190
++ PP PPG G
Sbjct: 1027 DKGPPGPVGPPGSNG 1041
Score = 36.2 bits (82), Expect = 0.20
Identities = 53/181 (29%), Positives = 64/181 (35%), Gaps = 50/181 (27%)
Query: 66 PQGPPTPAKTPGASA--ALPGRPG-----GPP--------------------RGSRGARS 98
P+G P P+ TPG + L G PG G P G+RG
Sbjct: 742 PKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPG 801
Query: 99 QLFPPTEAQSTAAEAPLARRG-----GRRRGPGPARERGGRGL-----------EEGVSG 142
L PP A T + RG G R PG E G G + GV G
Sbjct: 802 PLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKG 861
Query: 143 ESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPPVG---SVPPGPTGTKPSR-RIN 198
E PG G++ +GSP L S P+ N G PPG TG S R+
Sbjct: 862 E--PGEPGQK-GDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVG 918
Query: 199 P 199
P
Sbjct: 919 P 919
Score = 36.2 bits (82), Expect = 0.20
Identities = 39/133 (29%), Positives = 52/133 (39%), Gaps = 12/133 (9%)
Query: 66 PQGPPTPAKTPGASAALPGRPG--GPP--RGSRGARSQLFPPTEAQSTAAEAPLARRG-- 119
P GPP PA G PG G GPP RG+ G+R + P + P + G
Sbjct: 802 PLGPPGPAGPTGEKGE-PGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVK 860
Query: 120 GRRRGPGPARERGGRGLEEGVSGESLPGA--GGRRLRGSGSPSRPSLTLSDPPNLSNLEE 177
G PG + G G +G++G P G L+G P P + +
Sbjct: 861 GEPGEPGQKGDAGSPG-PQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGP 919
Query: 178 FPPVGSVPPGPTG 190
P G+ PGP G
Sbjct: 920 PGPAGA--PGPAG 930
Score = 35.8 bits (81), Expect = 0.26
Identities = 43/143 (30%), Positives = 50/143 (34%), Gaps = 21/143 (14%)
Query: 59 EQSSRVLPQGPPTPAKTPGASAAL-------PGRPGGPPRGSRGARSQLFP--PTEAQST 109
++ R +P G P PA TPG P P GPP GS G + P P T
Sbjct: 1000 QRGERGMP-GLPGPAGTPGKVGPTGATGDKGPPGPVGPP-GSNGPVGEPGPEGPAGNDGT 1057
Query: 110 AAEAPLARRGGRRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDP 169
G R PGPA G +G PG G+R G P S P
Sbjct: 1058 PGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQR----GDPG--SRGPIGP 1111
Query: 170 PNLSNLEEFPPVGSVPPGPTGTK 192
P + P P GP G K
Sbjct: 1112 PGRAGKRGLPG----PQGPRGDK 1130
Score = 35.4 bits (80), Expect = 0.34
Identities = 44/150 (29%), Positives = 54/150 (36%), Gaps = 33/150 (22%)
Query: 66 PQGPPTPAKTPG-----------ASAALPGRPG--GPPR--GSRGARSQLFPPTEAQSTA 110
P GPP PA T G +PG PG G P G GA PP
Sbjct: 979 PDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPG 1038
Query: 111 AEAPLARRG--------GRRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRP 162
+ P+ G G G ERG RG + G +G LPG+ G G+P P
Sbjct: 1039 SNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRG-DPGPAG--LPGSQG----APGTPG-P 1090
Query: 163 SLTLSDPPNLSNLEEFPPVGSVPPGPTGTK 192
D + P+G PPG G +
Sbjct: 1091 VGAPGDAGQRGDPGSRGPIG--PPGRAGKR 1118
Score = 35.0 bits (79), Expect = 0.44
Identities = 56/189 (29%), Positives = 68/189 (35%), Gaps = 31/189 (16%)
Query: 68 GPPTPAKTPGASAAL--PGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRG--GRRR 123
GPP P +PG A+ G PG +G G+ PP A + P G G R
Sbjct: 408 GPPGPVGSPGLPGAIGTDGTPGA--KGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRG 465
Query: 124 GPGPARERGGRGLEEGVSGESLPGAGGRRLRGS-GSPSRPSL--TLSDPPNLSNLEEFPP 180
PG G +G E G GE PG G ++G G P DP +
Sbjct: 466 QPGDPGVPGFKG-EAGPKGE--PGPHG--IQGPIGPPGEEGKRGPRGDPGTVG------- 513
Query: 181 VGSVPPGPTGTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPSALDTSPWGLGL 240
PPGP G + + P S+ L PK V SS P P G
Sbjct: 514 ----PPGPVGERGAPGNRGFPGSD--GLPGPKG--AQGERGPVGSSGPKGSQGDPGRPGE 565
Query: 241 P--PGCRSL 247
P PG R L
Sbjct: 566 PGLPGARGL 574
Score = 32.3 bits (72), Expect = 2.8
Identities = 54/188 (28%), Positives = 70/188 (37%), Gaps = 33/188 (17%)
Query: 67 QGPPTPAKTPG--ASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRG 124
+G P PG S+ PG+PG G+ G Q P + P+
Sbjct: 608 RGQPGSMGLPGPKGSSGDPGKPG--EAGNAGVPGQRGAPGKDGEVGPSGPVGP------- 658
Query: 125 PGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPPVGSV 184
PG A ERG +G + LPG G G G P + DP G+V
Sbjct: 659 PGLAGERGEQGPPGPTGFQGLPGPPGPPGEG-GKPGDQGVP-GDP------------GAV 704
Query: 185 PP-GPTGTK--PSRRINP--TPVSEERSLSKPKTCFTSPPISCVPSSQPSALDTSPWGLG 239
P GP G + P R P T + E+ ++ P S PS P DT P GL
Sbjct: 705 GPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGP-DGPKGSPGPSGTPG--DTGPPGLQ 761
Query: 240 LPPGCRSL 247
PG R +
Sbjct: 762 GMPGERGI 769
Score = 32.0 bits (71), Expect = 3.7
Identities = 40/152 (26%), Positives = 50/152 (32%), Gaps = 23/152 (15%)
Query: 57 LREQSSRVLPQGPPTPAKTPGASAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLA 116
L+ Q P GPP PG PG P G G+R PP +
Sbjct: 226 LQGQQGGAGPTGPPGE----------PGDPG--PMGPIGSRGPEGPPGKPGEDG------ 267
Query: 117 RRGGRRRGPGPARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLE 176
GR PG G G LPG G RG P + P +
Sbjct: 268 -EPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGH--RGHKGLEGPKGEVGAPGSKGEAG 324
Query: 177 EFPPVGSVPP-GPTGTKPSR-RINPTPVSEER 206
P+G++ P GP G R R+ P +R
Sbjct: 325 PTGPMGAMGPLGPRGMPGERGRLGPQGAPGQR 356
>gi|153792780 additional sex combs like 2 [Homo sapiens]
Length = 1435
Score = 46.2 bits (108), Expect = 2e-04
Identities = 65/233 (27%), Positives = 87/233 (37%), Gaps = 23/233 (9%)
Query: 79 SAALPGRPGGPPRGSRGARSQLFPPTEAQSTAAEAPLARR--GGRRRGPGPARERGGRGL 136
S P R G A++QL A + AA A A GG GPGP GG+G
Sbjct: 645 SITSPNRTGARTLADIKAKAQLVKAQRAAAAAAAAAAAAASVGGTIPGPGPG---GGQGP 701
Query: 137 EEGVSGESLPGAGGRRLRGSGSPSRPSLTLSDPPNLSNLEEFPPVG--SVPPGPTGTKPS 194
EG G++ G R S + P+L L+ + E P G + P T T PS
Sbjct: 702 GEGGEGQTARGGSPGSDRVSETGKGPTLELAGTGSRGGTRELLPCGPETQPQSETKTTPS 761
Query: 195 RRINPTPVSEERSLSKPKTCFTSPPISCVPSSQPSALDTSPWGLGLPPGCRSLQEEREML 254
+ P VS + P T P +S +S PS P L E+ L
Sbjct: 762 -QAQPHSVSGAQLQQTPPVPPT-PAVSGACTSVPS-----------PAHIEKLDNEK--L 806
Query: 255 RKERSKQLQQSPT-PTCPTPELGSPLPSRTGSLTDEPADPARVSSRQRLELVA 306
R+ S + P P+ PS TG A P ++ +EL A
Sbjct: 807 NPTRATATVASVSHPQGPSSCRQEKAPSPTGPALISGASPVHCAADGTVELKA 859
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,643,455
Number of Sequences: 37866
Number of extensions: 3126718
Number of successful extensions: 18866
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 970
Number of HSP's that attempted gapping in prelim test: 14861
Number of HSP's gapped (non-prelim): 4144
length of query: 1227
length of database: 18,247,518
effective HSP length: 114
effective length of query: 1113
effective length of database: 13,930,794
effective search space: 15504973722
effective search space used: 15504973722
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.