Guide to the Human Genome
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Name: SALL3 Sequence: fasta or formatted (1300aa) NCBI GI: 154146199
Description:

sal-like 3

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.7        165           4
 C cysteine            2.4         31           2
 D aspartate           3.4         44           3
 E glutamate           6.0         78           2
 F phenylalanine       2.9         38           2
 G glycine             8.1        105           3
 H histidine           2.5         32           1
 I isoleucine          2.8         36           1
 K lysine              4.8         62           2
 L leucine             7.9        103           2
 M methionine          2.5         32           1
 N asparagine          2.9         38           2
 P proline            12.3        160           3
 Q glutamine           4.5         58           4
 R arginine            4.1         53           2
 S serine             10.6        138           4
 T threonine           4.5         58           2
 V valine              4.1         53           2
 W tryptophan          0.3          4           1
 Y tyrosine            0.9         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sal-like 3 
SALL1                 0.460   sal-like 1 isoform a 
SALL1                 0.436   sal-like 1 isoform b 
SALL4                 0.219   sal-like 4 
SALL2                 0.171   sal-like 2 
ZNF236                0.041   zinc finger protein 236 
LOC100133142          0.041   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100133142          0.041   PREDICTED: similar to zinc finger protein 208 [Homo...
ZNF628                0.039   zinc finger protein 628 
E4F1                  0.033   p120E4F 
ZNF48                 0.031   zinc finger protein 48 
ZNF775                0.030   zinc finger protein 775 
ZNF627                0.030   zinc finger protein 627 
RREB1                 0.028   ras responsive element binding protein 1 isoform 1 [...
ZNF136                0.028   zinc finger protein 136 
ZNF296                0.027   zinc finger protein 296 
ZNF441                0.026   zinc finger protein 441 
ZNF615                0.026   zinc finger protein 615 
ZNF709                0.026   zinc finger protein 709 isoform b 
ZNF709                0.026   zinc finger protein 709 isoform a 
ZNF341                0.026   zinc finger protein 341 
ZNF77                 0.026   zinc finger protein 77 
ZNF564                0.026   zinc finger protein 564 
REPIN1                0.026   replication initiator 1 isoform 1 
REPIN1                0.026   replication initiator 1 isoform 1 
REPIN1                0.026   replication initiator 1 isoform 3 
REPIN1                0.026   replication initiator 1 isoform 1 
ZNF266                0.025   zinc finger protein 266 
ZNF266                0.025   zinc finger protein 266 
ZNF408                0.025   zinc finger protein 408 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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