Guide to the Human Genome
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Name: CASKIN2 Sequence: fasta or formatted (1120aa) NCBI GI: 217416350
Description:

cask-interacting protein 2 isoform b

Referenced in:

Ankyrin Family

Other entries for this name:
alt prot [1202aa] cask-interacting protein 2 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6        108           3
 C cysteine            0.9         10           1
 D aspartate           3.1         35           2
 E glutamate           7.1         80           4
 F phenylalanine       1.5         17           1
 G glycine             9.8        110           3
 H histidine           2.1         24           1
 I isoleucine          2.7         30           1
 K lysine              3.4         38           2
 L leucine            10.7        120           3
 M methionine          1.0         11           1
 N asparagine          2.2         25           1
 P proline            14.4        161           6
 Q glutamine           4.7         53           2
 R arginine            6.3         71           3
 S serine              8.5         95           3
 T threonine           5.4         60           2
 V valine              4.1         46           2
 W tryptophan          0.8          9           1
 Y tyrosine            1.5         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cask-interacting protein 2 isoform b 
CASKIN2               1.000   cask-interacting protein 2 isoform a 
CASKIN1               0.335   CASK interacting protein 1 
ANKS1A                0.062   ankyrin repeat and sterile alpha motif domain conta...
ANKS1B                0.061   cajalin 2 isoform a 
NACA                  0.044   nascent polypeptide-associated complex alpha subuni...
PRB2                  0.040   proline-rich protein BstNI subfamily 2 
RIPK4                 0.040   ankyrin repeat domain 3 
FMN2                  0.040   formin 2 
FLJ22184              0.038   PREDICTED: hypothetical protein FLJ22184 
ANK1                  0.037   ankyrin 1 isoform 9 
ANK1                  0.037   ankyrin 1 isoform 1 
ANK1                  0.037   ankyrin 1 isoform 3 
ANK1                  0.037   ankyrin 1 isoform 2 
ANK1                  0.037   ankyrin 1 isoform 4 
FLJ22184              0.037   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.037   PREDICTED: hypothetical protein LOC80164 
RAPH1                 0.035   Ras association and pleckstrin homology domains 1 is...
ANK3                  0.034   ankyrin 3 isoform 1 
MUC2                  0.034   mucin 2 precursor 
WIPF1                 0.033   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.033   WAS/WASL interacting protein family, member 1 
ANK2                  0.033   ankyrin 2 isoform 3 
ANK2                  0.033   ankyrin 2 isoform 2 
ANK2                  0.033   ankyrin 2 isoform 1 
KIAA1522              0.031   hypothetical protein LOC57648 
ESPN                  0.030   espin 
ANKK1                 0.030   ankyrin repeat and kinase domain containing 1 
TAF4                  0.029   TBP-associated factor 4 
ANKRD27               0.029   ankyrin repeat domain 27 (VPS9 domain) 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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