Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CASKIN2 Sequence: fasta or formatted (1202aa) NCBI GI: 217416347
Description:

cask-interacting protein 2 isoform a

Referenced in:

Ankyrin Family

Other entries for this name:
alt prot [1120aa] cask-interacting protein 2 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8        118           3
 C cysteine            0.8         10           1
 D aspartate           3.4         41           2
 E glutamate           6.9         83           4
 F phenylalanine       1.5         18           1
 G glycine             9.8        118           3
 H histidine           2.2         26           2
 I isoleucine          2.7         33           1
 K lysine              3.8         46           2
 L leucine            11.1        133           3
 M methionine          1.0         12           1
 N asparagine          2.4         29           1
 P proline            13.4        161           6
 Q glutamine           4.7         57           2
 R arginine            6.1         73           3
 S serine              8.2         99           3
 T threonine           5.4         65           2
 V valine              4.4         53           2
 W tryptophan          0.7          9           1
 Y tyrosine            1.5         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cask-interacting protein 2 isoform a 
CASKIN2               0.936   cask-interacting protein 2 isoform b 
CASKIN1               0.356   CASK interacting protein 1 
ANKS1B                0.078   cajalin 2 isoform a 
ANKS1A                0.076   ankyrin repeat and sterile alpha motif domain conta...
RIPK4                 0.045   ankyrin repeat domain 3 
NACA                  0.041   nascent polypeptide-associated complex alpha subuni...
ANK1                  0.041   ankyrin 1 isoform 9 
ANK1                  0.041   ankyrin 1 isoform 1 
ANK1                  0.041   ankyrin 1 isoform 3 
ANK1                  0.041   ankyrin 1 isoform 2 
ANK1                  0.041   ankyrin 1 isoform 4 
ANK3                  0.040   ankyrin 3 isoform 1 
TNKS2                 0.038   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
ANKRD28               0.038   ankyrin repeat domain 28 
ANK2                  0.038   ankyrin 2 isoform 3 
ANK2                  0.038   ankyrin 2 isoform 2 
ANK2                  0.038   ankyrin 2 isoform 1 
PRB2                  0.037   proline-rich protein BstNI subfamily 2 
ANKK1                 0.037   ankyrin repeat and kinase domain containing 1 
FMN2                  0.037   formin 2 
TNKS                  0.037   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
DAPK1                 0.035   death-associated protein kinase 1 
FLJ22184              0.035   PREDICTED: hypothetical protein FLJ22184 
ANKRD52               0.034   ankyrin repeat domain 52 
FLJ22184              0.034   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.034   PREDICTED: hypothetical protein LOC80164 
ANKRD44               0.034   ankyrin repeat domain 44 
ANKRD50               0.034   ankyrin repeat domain 50 
ANKDD1A               0.033   ankyrin repeat and death domain containing 1A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press