Guide to the Human Genome
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Name: PRB3 Sequence: fasta or formatted (309aa) NCBI GI: 117306167
Description:

proline-rich protein BstNI subfamily 3 precursor

Referenced in:

Lacrimal and Salivary Glands

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.3          4           1
 C cysteine            0.0          0           0
 D aspartate           0.3          1           1
 E glutamate           4.5         14           2
 F phenylalanine       0.0          0           0
 G glycine            19.7         61           2
 H histidine           1.0          3           1
 I isoleucine          0.6          2           1
 K lysine              4.5         14           1
 L leucine             2.9          9           2
 M methionine          0.3          1           1
 N asparagine          4.2         13           1
 P proline            35.0        108           5
 Q glutamine          13.9         43           2
 R arginine            4.9         15           2
 S serine              5.5         17           2
 T threonine           0.3          1           1
 V valine              1.0          3           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proline-rich protein BstNI subfamily 3 precursor [H... 
PRB2                  0.709   proline-rich protein BstNI subfamily 2 
PRB1                  0.694   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB4                  0.564   proline-rich protein BstNI subfamily 4 precursor [Ho...
PRB1                  0.359   proline-rich protein BstNI subfamily 1 isoform 2 pre...
PRB1                  0.321   proline-rich protein BstNI subfamily 1 isoform 3 pre...
PRH1                  0.223   proline-rich protein HaeIII subfamily 1 
PRH2                  0.213   proline-rich protein HaeIII subfamily 2 
PRH2                  0.213   proline-rich protein HaeIII subfamily 2 
FMN2                  0.172   formin 2 
WDR33                 0.170   WD repeat domain 33 isoform 1 
SYN1                  0.163   synapsin I isoform Ib 
SYN1                  0.161   synapsin I isoform Ia 
SFPQ                  0.157   splicing factor proline/glutamine rich (polypyrimidin...
COL3A1                0.155   collagen type III alpha 1 preproprotein 
COL4A5                0.151   type IV collagen alpha 5 isoform 1 precursor 
WIPF1                 0.151   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.151   WAS/WASL interacting protein family, member 1 
COL4A5                0.149   type IV collagen alpha 5 isoform 2 precursor 
COL1A1                0.148   alpha 1 type I collagen preproprotein 
COL4A5                0.146   type IV collagen alpha 5 isoform 3 precursor 
COL5A1                0.146   alpha 1 type V collagen preproprotein 
COL8A1                0.143   alpha 1 type VIII collagen precursor 
COL8A1                0.143   alpha 1 type VIII collagen precursor 
COL11A1               0.142   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.142   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.142   alpha 1 type XI collagen isoform A preproprotein [Ho...
LOC100293055          0.141   PREDICTED: similar to COL22A1 protein 
COL22A1               0.141   collagen, type XXII, alpha 1 
COL11A2               0.139   collagen, type XI, alpha 2 isoform 2 preproprotein ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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