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Search of human proteins with 54112105
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|54112105 ectodysplasin A isoform EDA-C [Homo sapiens]
(147 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|54112105 ectodysplasin A isoform EDA-C [Homo sapiens] 303 4e-83
gi|54112103 ectodysplasin A isoform EDA-B [Homo sapiens] 275 1e-74
gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens] 275 1e-74
gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens] 275 1e-74
gi|54112113 ectodysplasin A isoform EDA-O [Homo sapiens] 274 2e-74
gi|54112107 ectodysplasin A isoform EDA-D [Homo sapiens] 274 2e-74
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 37 0.006
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 35 0.017
gi|14249622 ajuba isoform 1 [Homo sapiens] 35 0.023
gi|38194224 G protein-coupled receptor 25 [Homo sapiens] 35 0.023
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 35 0.029
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 33 0.066
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 33 0.066
gi|116812620 hypothetical protein LOC147965 [Homo sapiens] 33 0.066
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 33 0.086
gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens] 33 0.086
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 33 0.086
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 33 0.11
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 32 0.15
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 32 0.15
gi|4758168 distal-less homeobox 2 [Homo sapiens] 32 0.15
gi|61744445 ficolin 2 isoform a precursor [Homo sapiens] 32 0.15
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 32 0.15
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 32 0.15
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 32 0.15
gi|122937215 prospero homeobox 2 [Homo sapiens] 32 0.15
gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens] 32 0.19
gi|16076875 tripartite motif-containing 7 isoform 4 [Homo sapiens] 32 0.19
gi|48762934 alpha 2 type I collagen [Homo sapiens] 32 0.25
gi|39930511 collagen and calcium binding EGF domains 1 [Homo sap... 32 0.25
>gi|54112105 ectodysplasin A isoform EDA-C [Homo sapiens]
Length = 147
Score = 303 bits (775), Expect = 4e-83
Identities = 147/147 (100%), Positives = 147/147 (100%)
Query: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
Sbjct: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
Query: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
Sbjct: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
Query: 121 AALHSDSQDGHQVSHLVGAAAAPSPRG 147
AALHSDSQDGHQVSHLVGAAAAPSPRG
Sbjct: 121 AALHSDSQDGHQVSHLVGAAAAPSPRG 147
>gi|54112103 ectodysplasin A isoform EDA-B [Homo sapiens]
Length = 178
Score = 275 bits (703), Expect = 1e-74
Identities = 133/136 (97%), Positives = 135/136 (99%)
Query: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
Sbjct: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
Query: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
Sbjct: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
Query: 121 AALHSDSQDGHQVSHL 136
AALHSDSQDGHQ++ L
Sbjct: 121 AALHSDSQDGHQMALL 136
>gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens]
Length = 389
Score = 275 bits (703), Expect = 1e-74
Identities = 133/136 (97%), Positives = 135/136 (99%)
Query: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
Sbjct: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
Query: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
Sbjct: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
Query: 121 AALHSDSQDGHQVSHL 136
AALHSDSQDGHQ++ L
Sbjct: 121 AALHSDSQDGHQMALL 136
>gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens]
Length = 391
Score = 275 bits (703), Expect = 1e-74
Identities = 133/136 (97%), Positives = 135/136 (99%)
Query: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
Sbjct: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
Query: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
Sbjct: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
Query: 121 AALHSDSQDGHQVSHL 136
AALHSDSQDGHQ++ L
Sbjct: 121 AALHSDSQDGHQMALL 136
>gi|54112113 ectodysplasin A isoform EDA-O [Homo sapiens]
Length = 135
Score = 274 bits (700), Expect = 2e-74
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
Sbjct: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
Query: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
Sbjct: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
Query: 121 AALHSDSQDGHQ 132
AALHSDSQDGHQ
Sbjct: 121 AALHSDSQDGHQ 132
>gi|54112107 ectodysplasin A isoform EDA-D [Homo sapiens]
Length = 142
Score = 274 bits (700), Expect = 2e-74
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
Sbjct: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
Query: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
Sbjct: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
Query: 121 AALHSDSQDGHQ 132
AALHSDSQDGHQ
Sbjct: 121 AALHSDSQDGHQ 132
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 37.0 bits (84), Expect = 0.006
Identities = 29/81 (35%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 68 LRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDS 127
L + RG G G PG G S G+D D+ G P PK EPG+A D
Sbjct: 22 LAQIRGPPGERGPPGPPGPPGVPGS-DGIDGDNGPPGKAGPPGPKG---EPGKAG--PDG 75
Query: 128 QDGHQ-VSHLVGAAAAPSPRG 147
DG + L GA P P G
Sbjct: 76 PDGKPGIDGLTGAKGEPGPMG 96
Score = 29.6 bits (65), Expect = 0.95
Identities = 22/87 (25%), Positives = 30/87 (34%), Gaps = 15/87 (17%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGL----------DPDSPITSHLGQPSPKQQPLEPGE 120
++G G G PG G + +G DP H G P P P PG
Sbjct: 569 KQGPHGHPGPRGVPGIVGAVGQIGNTGPKGKRGEKGDPGEVGRGHPGMPGPPGIPGLPGR 628
Query: 121 AALHSDSQDGHQVSHLVGAAAAPSPRG 147
+ +DG + G+ AP G
Sbjct: 629 PGQAINGKDGDR-----GSPGAPGEAG 650
Score = 28.9 bits (63), Expect = 1.6
Identities = 26/74 (35%), Positives = 28/74 (37%), Gaps = 9/74 (12%)
Query: 79 GGSGTPGTSGTLSSLGGL-DPDSP----ITSHLGQPSPKQQPLEPGEAALHSDSQDGHQV 133
G GTPGT G S G P SP + GQP K P + GE Q
Sbjct: 307 GKDGTPGTPGMKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGPGDQGEPG----PQGLPGF 362
Query: 134 SHLVGAAAAPSPRG 147
S G P PRG
Sbjct: 363 SGPPGKEGEPGPRG 376
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 35.4 bits (80), Expect = 0.017
Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSP-----ITSHLGQPSPKQQPLEPGEAALHS 125
ERG + +G G PG G LG P P +T GQP PK GE
Sbjct: 662 ERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPG--P 719
Query: 126 DSQDGHQVSHLVGAAAAPSPRG 147
Q G+ GA P P+G
Sbjct: 720 PGQQGNP-----GAQGLPGPQG 736
Score = 29.3 bits (64), Expect = 1.2
Identities = 21/79 (26%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 69 RRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQ 128
R E+G G +G PG G G P+ G P P +P G+ D
Sbjct: 1308 RGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPV-GFPGDPGPPGEPGPAGQDGPPGDKG 1366
Query: 129 DGHQVSHLVGAAAAPSPRG 147
D + G +P P G
Sbjct: 1367 DDGE----PGQTGSPGPTG 1381
Score = 28.9 bits (63), Expect = 1.6
Identities = 37/139 (26%), Positives = 44/139 (31%), Gaps = 35/139 (25%)
Query: 13 PAAAPRERGSQGC-GCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCCYLELRSELRRE 71
P P E+G G G G P R G S +GF G
Sbjct: 857 PLGPPGEKGKLGVPGLPGYPGRQGPKGS----IGFPGFP--------------------- 891
Query: 72 RGAESRLGGSGTPGTSGTLSSLGGLDP--DSPITSHLGQPSPKQQPLEPGEAALHSD-SQ 128
GA GG GTPG G G P + G+P PK G A +
Sbjct: 892 -GANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGP 950
Query: 129 DGHQVSHLVGAAAAPSPRG 147
+G Q G P P+G
Sbjct: 951 NGPQ-----GPTGFPGPKG 964
Score = 28.5 bits (62), Expect = 2.1
Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 10/78 (12%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPG-EAALHSDSQD 129
E+G + G G G+SG G P PI G P P P PG + A S
Sbjct: 1496 EQGEKGDRGLPGPQGSSGPKGEQGITGPSGPI----GPPGPPGLPGPPGPKGAKGSSGPT 1551
Query: 130 GHQVSHLVGAAAAPSPRG 147
G + G A P P G
Sbjct: 1552 GPK-----GEAGHPGPPG 1564
Score = 28.1 bits (61), Expect = 2.8
Identities = 23/79 (29%), Positives = 29/79 (36%), Gaps = 12/79 (15%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSP--ITSHLGQPSPKQQPLEPGEAALHSDSQ 128
E+G +G G PG G G D P +G P + EPGEA +
Sbjct: 1238 EKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEA-----GE 1292
Query: 129 DGHQVSHLVGAAAAPSPRG 147
G L G P P+G
Sbjct: 1293 PG-----LPGEGGPPGPKG 1306
Score = 26.6 bits (57), Expect = 8.0
Identities = 26/95 (27%), Positives = 33/95 (34%), Gaps = 20/95 (21%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHL-------------GQPSPKQQP-- 115
E+GA+ G G PG +G + G P P L G P P P
Sbjct: 1406 EKGAKGEAGLEGPPGKTGPIGPQGA--PGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGP 1463
Query: 116 -LEPGEAALHSDSQDGHQVSH--LVGAAAAPSPRG 147
PG L DS + H L+G P +G
Sbjct: 1464 MGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQG 1498
>gi|14249622 ajuba isoform 1 [Homo sapiens]
Length = 538
Score = 35.0 bits (79), Expect = 0.023
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 64 LRSELRRERGAESRLGGSGTPGT-SGTLSSLGGLDPDSPITSHLGQPSPKQQPLEP 118
L + R +G SR G GTPG G LS LGG P + G P +PLEP
Sbjct: 11 LLEKFGRRKGESSRSGSDGTPGPGKGRLSGLGGPRKSGPRGATGG---PGDEPLEP 63
>gi|38194224 G protein-coupled receptor 25 [Homo sapiens]
Length = 361
Score = 35.0 bits (79), Expect = 0.023
Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 2 GYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCCY 61
G P + R L P G Q CG P+ A +G S LL L F L L ++TL CY
Sbjct: 171 GLPSLVYRGLQPLP-----GGQDSQCGEEPSHAFQGLSLLLLLLTFVLPL---VVTLFCY 222
Query: 62 LELRSELRR 70
+ LRR
Sbjct: 223 CRISRRLRR 231
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 34.7 bits (78), Expect = 0.029
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 64 LRSE--LRRERGAESRLGGSGTPGTSG-TLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
LR E +R ++G G G PG SG T+ G G+P P+ +P PG+
Sbjct: 142 LRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGD 201
Query: 121 AALHSDSQDGHQ-VSHLVGAAAAPSPRG 147
L D+ G + G AP P G
Sbjct: 202 RGLKGDNGVGQPGLPGAPGQGGAPGPPG 229
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 33.5 bits (75), Expect = 0.066
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 72 RGAESRLGGSGTPGTSGTLSS--LGGLDPDSPITSHLGQPSPKQQPLEPGE 120
+G+ LG +G PG G L G D I LG P PK + E GE
Sbjct: 1284 KGSRGSLGPTGAPGRMGAQGEPGLAGYDGHKGIVGPLGPPGPKGEKGEQGE 1334
Score = 32.0 bits (71), Expect = 0.19
Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 9/82 (10%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSH-----LGQPSPKQQPLEPGEAALHS 125
E G + G G PG G G PD P G P P+ +P PG+ +
Sbjct: 1043 EPGPQGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGPQGRPGRPGQQGVAG 1102
Query: 126 DSQDGHQVSHLVGAAAAPSPRG 147
+ GH S G P P G
Sbjct: 1103 ER--GHLGSR--GFPGIPGPSG 1120
Score = 30.8 bits (68), Expect = 0.42
Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 72 RGAESRLGGSGTPGTSGTLSSLGGLDPDSPI-----TSHLGQPSPKQQPLEPGEAALHSD 126
RG G SG PGT G G P PI G P +P PGEA + D
Sbjct: 1110 RGFPGIPGPSGPPGTKGLPGEPGPQGPQGPIGPPGEMGPKGPPGAVGEPGLPGEAGMKGD 1169
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 33.5 bits (75), Expect = 0.066
Identities = 24/74 (32%), Positives = 28/74 (37%), Gaps = 9/74 (12%)
Query: 79 GGSGTPGTSGTLSSLGGLDPDSPITSH-----LGQPSPKQQPLEPGEAALHSDSQDGHQV 133
G G PG G + G L P P+ G P PK P +PG L D
Sbjct: 944 GEQGLPGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGP- 1002
Query: 134 SHLVGAAAAPSPRG 147
VGA +P RG
Sbjct: 1003 ---VGANGSPGERG 1013
Score = 28.5 bits (62), Expect = 2.1
Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 72 RGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQDGH 131
RG + G GTPG G + G + + G P P P PG + D
Sbjct: 1177 RGPQGPTGSEGTPGLPGGVGQPGAVG-EKGERGDAGDPGPPGAPGIPGPKGDIGEKGD-- 1233
Query: 132 QVSHLVGAAAAPSPRG 147
S GAA P +G
Sbjct: 1234 --SGPSGAAGPPGKKG 1247
Score = 26.9 bits (58), Expect = 6.1
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPK 112
E+G G G PG G G P P T G+P P+
Sbjct: 561 EKGQRGDFGHVGQPGPPGEDGERGAEGPPGP-TGQAGEPGPR 601
Score = 26.9 bits (58), Expect = 6.1
Identities = 23/81 (28%), Positives = 25/81 (30%), Gaps = 9/81 (11%)
Query: 69 RRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQ 128
R ERG G G PG G L G P G+ K PG D
Sbjct: 1042 RGERGPPGPTGKDGIPGPLGPLGPPGAAGPS-------GEEGDKGDVGAPGHKGSKGDKG 1094
Query: 129 DGHQVSH--LVGAAAAPSPRG 147
D + G A P P G
Sbjct: 1095 DAGPPGQPGIRGPAGHPGPPG 1115
Score = 26.6 bits (57), Expect = 8.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 68 LRRERGAESRLGGSGTPGTSGTLSSLGGL 96
L+ ++G +G +G+PG G L GG+
Sbjct: 993 LKGDKGPPGPVGANGSPGERGPLGPAGGI 1021
>gi|116812620 hypothetical protein LOC147965 [Homo sapiens]
Length = 349
Score = 33.5 bits (75), Expect = 0.066
Identities = 27/71 (38%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 26 GCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCCYLELRSELRRERGAESRLGGSGTPG 85
G GG P A G SC F G + LA L TL E +RE GAE G G
Sbjct: 22 GYGGVPGAASRGASCPDFRGLC-VRLAAELATLGAL-----EQQREAGAEVLSAGDGPGA 75
Query: 86 TSGTLSSLGGL 96
L LG L
Sbjct: 76 EEDFLRQLGSL 86
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 33.1 bits (74), Expect = 0.086
Identities = 26/97 (26%), Positives = 33/97 (34%), Gaps = 22/97 (22%)
Query: 73 GAESRLGGSGTPGTSGTLSSLG-----------GLDPDSPITSHLGQPSPKQQPLEPGE- 120
G R G +G PG+ G G G+D + + G P P P PG
Sbjct: 126 GIRGRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHPGPD 185
Query: 121 ----------AALHSDSQDGHQVSHLVGAAAAPSPRG 147
A L S G QV + G+ PRG
Sbjct: 186 GLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRG 222
Score = 33.1 bits (74), Expect = 0.086
Identities = 25/79 (31%), Positives = 28/79 (35%), Gaps = 11/79 (13%)
Query: 69 RRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQ 128
R ERG G G G G GG PD P G P P P + G L
Sbjct: 710 RGERGNPGERGEPGITGLPGEKGMAGGHGPDGP----KGSPGPSGTPGDTGPPGL--QGM 763
Query: 129 DGHQVSHLVGAAAAPSPRG 147
G + G A P P+G
Sbjct: 764 PGER-----GIAGTPGPKG 777
Score = 31.6 bits (70), Expect = 0.25
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
Query: 73 GAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQDGHQ 132
G G G+ G +G ++G P P GQP K +P EPG+ G Q
Sbjct: 825 GPPGSRGNPGSRGENGPTGAVGFAGPQGPD----GQPGVKGEPGEPGQKG--DAGSPGPQ 878
Query: 133 VSHLVGAAAAPSPRG 147
G A +P P G
Sbjct: 879 -----GLAGSPGPHG 888
Score = 30.8 bits (68), Expect = 0.42
Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPI--TSHLGQPSPKQQPLEPGEAALHSDSQ 128
+RG G GT G G G L P P T G+P P+ PG + S+
Sbjct: 778 DRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRG-NPGSR 836
Query: 129 DGHQVSHLVGAAAAPSPRG 147
+ + VG A P G
Sbjct: 837 GENGPTGAVGFAGPQGPDG 855
Score = 30.0 bits (66), Expect = 0.72
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 69 RRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPI-----TSHLGQPSPK 112
R ERG G +GTPG G + G P P+ +G+P P+
Sbjct: 1001 RGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPE 1049
Score = 28.1 bits (61), Expect = 2.8
Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDS 127
E G E G GTPG G + G P G P + P PG D+
Sbjct: 1045 EPGPEGPAGNDGTPGRDGAVGERGDRGDPGP----AGLPGSQGAPGTPGPVGAPGDA 1097
Score = 26.9 bits (58), Expect = 6.1
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 72 RGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPK---QQPLEPGEA 121
+G E +LG G PG G G + S +G P PK P +PGEA
Sbjct: 581 QGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGS-MGLPGPKGSSGDPGKPGEA 632
Score = 26.9 bits (58), Expect = 6.1
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 68 LRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALH 124
L+ RG + G +G PG++G + G P LG+P + P G+ H
Sbjct: 895 LKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGP-AGPLGEPGKEGPPGLRGDPGSH 950
Score = 26.6 bits (57), Expect = 8.0
Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 13/76 (17%)
Query: 73 GAESRLGGSGTPGTSGTLSSLGGLDPDSP-ITSHLGQPSPKQQPLEPGEAALHSDSQDGH 131
G G +G+PGTSG S G P SP G + QP +PG ++
Sbjct: 426 GTPGAKGPTGSPGTSGPPGSAG--PPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEA---- 479
Query: 132 QVSHLVGAAAAPSPRG 147
G P P G
Sbjct: 480 ------GPKGEPGPHG 489
>gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens]
Length = 957
Score = 33.1 bits (74), Expect = 0.086
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 68 LRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPG 119
++ GA+ G G PG G + S G +S + +G PK QP +PG
Sbjct: 726 IQGHHGAKGERGEKGEPGVRGAIGSKG----ESGVDGLMGPAGPKGQPGDPG 773
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 33.1 bits (74), Expect = 0.086
Identities = 17/47 (36%), Positives = 20/47 (42%)
Query: 73 GAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPG 119
G + G G PG SG + G SH G P PK +P PG
Sbjct: 1048 GDQGEPGSPGPPGFSGIDGARGPKGNKGDPASHFGPPGPKGEPGSPG 1094
Score = 29.3 bits (64), Expect = 1.2
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 73 GAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPG 119
G G GTPG G G P H G+P K QP PG
Sbjct: 984 GFPGERGDKGTPGMQGRRGEPGRYGPPG---FHRGEPGEKGQPGPPG 1027
Score = 28.9 bits (63), Expect = 1.6
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 73 GAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHS-DSQDGH 131
G + G G PG G++ L G D + G P P P PG D +DG
Sbjct: 1267 GPDGPRGAPGPPGLPGSVDLLRGEPGDCGLP---GPPGPPGPPGPPGYKGFPGCDGKDGQ 1323
Query: 132 QVSHLVGAAAAPSPRG 147
+ G P P+G
Sbjct: 1324 K-----GPVGFPGPQG 1334
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 32.7 bits (73), Expect = 0.11
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPI--TSHLGQPSPKQQPLEPGEAALHSDSQ 128
++G G +G PG G S+G + P P H G P P P PG D
Sbjct: 1375 QKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGAPGPSGSPGLPGVPGSMGDMV 1434
Query: 129 DGHQVSHLV 137
+ ++ +
Sbjct: 1435 NYDEIKRFI 1443
Score = 30.4 bits (67), Expect = 0.55
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLG--GLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQ 128
ERG + + G +G PG GT + G GL + + G PK E G+ S
Sbjct: 677 ERGLKGQKGDAGNPGDPGTPGTTGRPGLSGEPGVQ---GPAGPKG---EKGDGCTACPSL 730
Query: 129 DGHQVSHLVGAAAAPSPRG 147
G V+ + G P P+G
Sbjct: 731 QG-TVTDMAGRPGQPGPKG 748
Score = 28.1 bits (61), Expect = 2.8
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 72 RGAESRLGGSGTPGTSGTLSSLG--GLDPD---SPITSHLGQPSPKQQPLEPG 119
RG+ G G PG G + S G GL + + +T G+P P QP PG
Sbjct: 1041 RGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPG 1093
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 32.3 bits (72), Expect = 0.15
Identities = 26/90 (28%), Positives = 31/90 (34%), Gaps = 15/90 (16%)
Query: 69 RRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPI-----------TSHLGQPSPKQQPLE 117
R ERG G SG PG G + G P P+ G P P
Sbjct: 989 RGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGR 1048
Query: 118 PGEAALHSDSQDGHQVSHLVGAAAAPSPRG 147
G A + D + + VGA AP P G
Sbjct: 1049 DGAAGVKGDRGE----TGAVGAPGAPGPPG 1074
Score = 30.4 bits (67), Expect = 0.55
Identities = 25/79 (31%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 69 RRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQ 128
R GA+ G G PGT GT G P P + G P + P E G A +
Sbjct: 707 RGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQ-GPPGLQGMPGERGAAGIAGPKG 765
Query: 129 DGHQVSHLVGAAAAPSPRG 147
D V G AP G
Sbjct: 766 DRGDVGE-KGPEGAPGKDG 783
Score = 26.6 bits (57), Expect = 8.0
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 12/41 (29%)
Query: 107 GQPSPKQQPLEPGEAALHSDSQDGHQVSHLVGAAAAPSPRG 147
GQP PK Q EPG+ + +VG P P+G
Sbjct: 98 GQPGPKGQKGEPGD------------IKDIVGPKGPPGPQG 126
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 32.3 bits (72), Expect = 0.15
Identities = 26/90 (28%), Positives = 31/90 (34%), Gaps = 15/90 (16%)
Query: 69 RRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPI-----------TSHLGQPSPKQQPLE 117
R ERG G SG PG G + G P P+ G P P
Sbjct: 920 RGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGR 979
Query: 118 PGEAALHSDSQDGHQVSHLVGAAAAPSPRG 147
G A + D + + VGA AP P G
Sbjct: 980 DGAAGVKGDRGE----TGAVGAPGAPGPPG 1005
Score = 30.4 bits (67), Expect = 0.55
Identities = 25/79 (31%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 69 RRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQ 128
R GA+ G G PGT GT G P P + G P + P E G A +
Sbjct: 638 RGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQ-GPPGLQGMPGERGAAGIAGPKG 696
Query: 129 DGHQVSHLVGAAAAPSPRG 147
D V G AP G
Sbjct: 697 DRGDVGE-KGPEGAPGKDG 714
>gi|4758168 distal-less homeobox 2 [Homo sapiens]
Length = 328
Score = 32.3 bits (72), Expect = 0.15
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 73 GAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLG------QPSPKQQPLEPGEAALH-S 125
G R+ G G PG+ G+ + G P S ++ LG Q S L+ LH +
Sbjct: 244 GVPQRMAGGGGPGSGGSGAGSSGSSPSSAASAFLGNYPWYHQTSGSASHLQATAPLLHPT 303
Query: 126 DSQDGHQVSHLVGAAAAPSPRG 147
+ H H G AP G
Sbjct: 304 QTPQPHHHHHHHGGGGAPVSAG 325
>gi|61744445 ficolin 2 isoform a precursor [Homo sapiens]
Length = 313
Score = 32.3 bits (72), Expect = 0.15
Identities = 26/82 (31%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 42 LFLGFFGLSLALHLLTLC-----CYLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGL 96
L L F G++ AL C LE +L RG G G G +GT G
Sbjct: 15 LLLSFLGMAWALQAADTCPEVKMVGLEGSDKLTILRGCPGLPGAPGPKGEAGTNGKRGER 74
Query: 97 DPDSPITSHLGQPSPKQQPLEP 118
P P G P P P EP
Sbjct: 75 GPPGP-PGKAGPPGPNGAPGEP 95
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 32.3 bits (72), Expect = 0.15
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHL-GQPSPKQQPLEPGEAALHSDSQD 129
E G++ G G PG SG L GL D+ T + G P PK QP E G + +D
Sbjct: 1046 ESGSQGIRGSPGLPGASG----LPGLKGDNGQTVEISGSPGPKGQPGESGFKG--TKGRD 1099
Query: 130 GHQVSHLVGAAAAPSPRG 147
G L+G P +G
Sbjct: 1100 G-----LIGNIGFPGNKG 1112
Score = 28.1 bits (61), Expect = 2.8
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 68 LRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSP 111
LR E+G + LG G G SG + GG+ P T G+P P
Sbjct: 460 LRGEQGPKGNLGLKGIKGDSGFCACDGGV----PNTGPPGEPGP 499
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 32.3 bits (72), Expect = 0.15
Identities = 27/81 (33%), Positives = 30/81 (37%), Gaps = 10/81 (12%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSD---- 126
ERG G GTPGT G G P G+ P P +PGEA
Sbjct: 423 ERGGPGERGPRGTPGTRGPRGDPGEAGPQ----GDQGREGPVGVPGDPGEAGPIGPKGYR 478
Query: 127 SQDGHQVSHLVGAAAAPSPRG 147
+G S GA AP P G
Sbjct: 479 GDEGPPGSE--GARGAPGPAG 497
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 32.3 bits (72), Expect = 0.15
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHL-GQPSPKQQPLEPGEAALHSDSQD 129
E G++ G G PG SG L GL D+ T + G P PK QP E G + +D
Sbjct: 1045 ESGSQGIRGSPGLPGASG----LPGLKGDNGQTVEISGSPGPKGQPGESGFKG--TKGRD 1098
Query: 130 GHQVSHLVGAAAAPSPRG 147
G L+G P +G
Sbjct: 1099 G-----LIGNIGFPGNKG 1111
Score = 28.1 bits (61), Expect = 2.8
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 68 LRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSP 111
LR E+G + LG G G SG + GG+ P T G+P P
Sbjct: 459 LRGEQGPKGNLGLKGIKGDSGFCACDGGV----PNTGPPGEPGP 498
>gi|122937215 prospero homeobox 2 [Homo sapiens]
Length = 592
Score = 32.3 bits (72), Expect = 0.15
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 8 RRELLPAAAPRE--RGSQGCGCGGAPARAGEGNSC 40
+ +L AA PR+ +G GCG G P A +GN C
Sbjct: 147 QEHILQAAKPRDTAQGPGGCGTGKGPLSAKQGNGC 181
>gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens]
Length = 511
Score = 32.0 bits (71), Expect = 0.19
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 8 RRELLPAAAPRERGSQGCGCGGAPARAGE 36
RR LPAAAP E GSQ A AR G+
Sbjct: 104 RRFSLPAAAPGEHGSQAAAARAAAARCGQ 132
>gi|16076875 tripartite motif-containing 7 isoform 4 [Homo sapiens]
Length = 221
Score = 32.0 bits (71), Expect = 0.19
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 8 RRELLPAAAPRERGSQGCGCGGAPARAGE 36
RR LPAAAP E GSQ A AR G+
Sbjct: 104 RRFSLPAAAPGEHGSQAAAARAAAARCGQ 132
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 31.6 bits (70), Expect = 0.25
Identities = 28/89 (31%), Positives = 32/89 (35%), Gaps = 10/89 (11%)
Query: 69 RRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSH--LGQPSPKQQPLEPG-EAALHS 125
R ERG G G PG G G P + S G P + PG +
Sbjct: 879 RGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGR 938
Query: 126 DSQDGHQVSH-------LVGAAAAPSPRG 147
D Q GH+ VGAA AP P G
Sbjct: 939 DGQPGHKGERGYPGNIGPVGAAGAPGPHG 967
Score = 27.7 bits (60), Expect = 3.6
Identities = 28/98 (28%), Positives = 33/98 (33%), Gaps = 6/98 (6%)
Query: 50 SLALHLLTLCCYLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQP 109
+L L +TLC L L+ E + G G G G G D P G P
Sbjct: 9 TLLLLAVTLC--LATCQSLQEETVRKGPAGDRGPRGERGPPGPPGRDGEDGPT----GPP 62
Query: 110 SPKQQPLEPGEAALHSDSQDGHQVSHLVGAAAAPSPRG 147
P P PG + DG V G PRG
Sbjct: 63 GPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGPRG 100
Score = 27.3 bits (59), Expect = 4.7
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 71 ERGAESRLGGSGTPGTSGT--LSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQ 128
ERG G G PGT G + G + + G P K +P PGE + Q
Sbjct: 155 ERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENG--TPGQ 212
Query: 129 DGHQ-VSHLVGAAAAPSPRG 147
G + + G AP P G
Sbjct: 213 TGARGLPGERGRVGAPGPAG 232
Score = 27.3 bits (59), Expect = 4.7
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 73 GAESRLGGSGTPGTSGTLSSLGGLDPDSPITS-----HLGQPSPK 112
G R+G G G G+ S+G + P PI S G P PK
Sbjct: 220 GERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPK 264
Score = 26.9 bits (58), Expect = 6.1
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 66 SELRRERGAESRLGGSGTPGTSGTLSSLG--GLDPDSPITSHLGQPSPKQQPLEPGEA 121
S L ERGA GG G G G +G G D +G P P + GEA
Sbjct: 639 SGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEA 696
>gi|39930511 collagen and calcium binding EGF domains 1 [Homo
sapiens]
Length = 406
Score = 31.6 bits (70), Expect = 0.25
Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 16/78 (20%)
Query: 72 RGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHL--GQPSPKQQPLEPGEAALHSDSQD 129
+G+ G G PG G S+G + P SP SH+ G+ P P PG +D
Sbjct: 264 KGSPGFPGMPGPPGQPGPRGSMGPMGP-SPDLSHIKQGRRGPVGPPGAPG--------RD 314
Query: 130 GHQVSHLVGAAAAPSPRG 147
G + G AP PRG
Sbjct: 315 GSK-----GERGAPGPRG 327
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.136 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,426,280
Number of Sequences: 37866
Number of extensions: 401748
Number of successful extensions: 2189
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 1671
Number of HSP's gapped (non-prelim): 614
length of query: 147
length of database: 18,247,518
effective HSP length: 93
effective length of query: 54
effective length of database: 14,725,980
effective search space: 795202920
effective search space used: 795202920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.