Guide to the Human Genome
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Name: PROX2 Sequence: fasta or formatted (592aa) NCBI GI: 122937215
Description:

prospero homeobox 2

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         38           2
 C cysteine            1.9         11           1
 D aspartate           4.1         24           1
 E glutamate           5.1         30           1
 F phenylalanine       3.5         21           3
 G glycine             6.4         38           2
 H histidine           2.9         17           1
 I isoleucine          3.4         20           2
 K lysine              5.6         33           2
 L leucine            10.5         62           2
 M methionine          1.9         11           1
 N asparagine          3.4         20           2
 P proline            11.3         67           2
 Q glutamine           7.4         44           3
 R arginine            6.1         36           2
 S serine              9.8         58           3
 T threonine           3.0         18           2
 V valine              4.6         27           2
 W tryptophan          1.4          8           1
 Y tyrosine            1.5          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   prospero homeobox 2 
PROX1                 0.236   prospero homeobox 1 
ARID1A                0.013   AT rich interactive domain 1A isoform a 
ARID1A                0.013   AT rich interactive domain 1A isoform b 
SOS2                  0.011   son of sevenless homolog 2 
BSN                   0.011   bassoon protein 
FLJ22184              0.010   PREDICTED: hypothetical protein LOC80164 
FLJ37078              0.010   hypothetical protein LOC222183 
APC2                  0.009   adenomatosis polyposis coli 2 
BRD4                  0.008   bromodomain-containing protein 4 isoform long 
RERE                  0.008   atrophin-1 like protein isoform b 
RERE                  0.008   atrophin-1 like protein isoform a 
RERE                  0.008   atrophin-1 like protein isoform a 
POU6F2                0.008   POU domain, class 6, transcription factor 2 
TNRC18                0.008   trinucleotide repeat containing 18 
GLTSCR1               0.008   glioma tumor suppressor candidate region gene 1 [Ho...
TRIOBP                0.008   TRIO and F-actin binding protein isoform 6 
BAHCC1                0.008   BAH domain and coiled-coil containing 1 
REXO1                 0.008   transcription elongation factor B polypeptide 3 bin...
C14orf43              0.008   hypothetical protein LOC91748 
C14orf43              0.008   hypothetical protein LOC91748 
OTUD1                 0.008   OTU domain containing 1 
FLJ22184              0.008   PREDICTED: hypothetical protein FLJ22184 
C11orf41              0.008   hypothetical protein LOC25758 
MEX3D                 0.008   ring finger and KH domain containing 1 
SNAI2                 0.008   snail 2 
LOC100287553          0.008   PREDICTED: hypothetical protein XP_002342985 
RBM33                 0.008   RNA binding motif protein 33 
NCOA6                 0.008   nuclear receptor coactivator 6 
C10orf47              0.007   hypothetical protein LOC254427 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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