Guide to the Human Genome
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Name: FAM98C Sequence: fasta or formatted (349aa) NCBI GI: 116812620
Description:

hypothetical protein LOC147965

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.3         43           3
 C cysteine            3.7         13           2
 D aspartate           4.6         16           1
 E glutamate           7.4         26           2
 F phenylalanine       1.1          4           1
 G glycine             9.5         33           2
 H histidine           1.1          4           1
 I isoleucine          1.7          6           1
 K lysine              2.9         10           6
 L leucine            16.0         56           3
 M methionine          1.4          5           1
 N asparagine          0.9          3           1
 P proline             7.7         27           2
 Q glutamine           4.3         15           2
 R arginine            9.2         32           2
 S serine              6.6         23           1
 T threonine           2.9         10           2
 V valine              4.6         16           2
 W tryptophan          1.4          5           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC147965 
FAM98A                0.290   hypothetical protein LOC25940 
FAM98B                0.246   family with sequence similarity 98, member B isofor...
FAM98B                0.175   family with sequence similarity 98, member B isofor...
FBXL15                0.013   F-box and leucine-rich repeat protein 15 
EDA                   0.012   ectodysplasin A isoform EDA-O 
EDA                   0.012   ectodysplasin A isoform EDA-D 
EDA                   0.012   ectodysplasin A isoform EDA-C 
EDA                   0.012   ectodysplasin A isoform EDA-B 
EDA                   0.012   ectodysplasin A isoform EDA-A2 
EDA                   0.012   ectodysplasin A isoform EDA-A1 
SMARCA2               0.012   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.012   SWI/SNF-related matrix-associated actin-dependent re...
AMOTL2                0.012   angiomotin like 2 
GGA3                  0.010   ADP-ribosylation factor binding protein 3 isoform sh...
SH3BP1                0.010   SH3-domain binding protein 1 
GGA3                  0.010   ADP-ribosylation factor binding protein 3 isoform lo...
PKP4                  0.010   plakophilin 4 isoform b 
PKP4                  0.010   plakophilin 4 isoform a 
NT5DC4                0.010   PREDICTED: 5'-nucleotidase domain containing 4 [Hom...
NT5DC4                0.010   PREDICTED: 5'-nucleotidase domain containing 4 [Hom...
LOC100292392          0.010   PREDICTED: hypothetical protein 
LOC100287377          0.010   PREDICTED: hypothetical protein 
LOC100287377          0.010   PREDICTED: hypothetical protein XP_002342514 
LOC100293110          0.009   PREDICTED: hypothetical protein 
LOC100289572          0.009   PREDICTED: hypothetical protein 
LOC100289572          0.009   PREDICTED: hypothetical protein XP_002343123 
HSD17B8               0.009   estradiol 17 beta-dehydrogenase 8 
LONRF2                0.009   LON peptidase N-terminal domain and ring finger 2 [...
GLB1L3                0.009   galactosidase, beta 1 like 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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