EDA 32472

Name: EDA	Sequence: fasta or formatted (178aa)		NCBI GI: 54112103
Description: ectodysplasin A isoform EDA-B		Referenced in: TNF and Related Signals
Other entries for this name: alt prot [391aa] ectodysplasin A isoform EDA-A1 alt prot [389aa] ectodysplasin A isoform EDA-A2 alt prot [147aa] ectodysplasin A isoform EDA-C alt prot [142aa] ectodysplasin A isoform EDA-D alt prot [135aa] ectodysplasin A isoform EDA-O
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.7 12 3 C cysteine 2.8 5 2 D aspartate 3.4 6 1 E glutamate 9.0 16 3 F phenylalanine 3.9 7 3 G glycine 12.9 23 2 H histidine 2.8 5 1 I isoleucine 1.1 2 1 K lysine 2.8 5 1 L leucine 14.0 25 2 M methionine 1.1 2 1 N asparagine 2.2 4 1 P proline 7.3 13 1 Q glutamine 3.9 7 2 R arginine 8.4 15 2 S serine 10.7 19 2 T threonine 3.4 6 1 V valine 1.1 2 1 W tryptophan 0.0 0 0 Y tyrosine 2.2 4 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 ectodysplasin A isoform EDA-B EDA 0.941 ectodysplasin A isoform EDA-A2 EDA 0.941 ectodysplasin A isoform EDA-A1 EDA 0.733 ectodysplasin A isoform EDA-C EDA 0.730 ectodysplasin A isoform EDA-O EDA 0.730 ectodysplasin A isoform EDA-D JUB 0.029 ajuba isoform 1 GPR25 0.029 G protein-coupled receptor 25 LOC100290283 0.029 PREDICTED: hypothetical protein XP_002347961 COL27A1 0.023 collagen, type XXVII, alpha 1 FAM98C 0.023 hypothetical protein LOC147965 COL21A1 0.023 collagen, type XXI, alpha 1 precursor COL4A4 0.023 alpha 4 type IV collagen precursor COL5A1 0.021 alpha 1 type V collagen preproprotein FCN2 0.021 ficolin 2 isoform a precursor COL16A1 0.021 alpha 1 type XVI collagen precursor PROX2 0.021 prospero homeobox 2 COL4A6 0.021 type IV alpha 6 collagen isoform A precursor COL4A6 0.021 type IV alpha 6 collagen isoform B precursor TRIM7 0.021 tripartite motif-containing 7 isoform 1 TRIM7 0.021 tripartite motif-containing 7 isoform 4 COL8A2 0.018 collagen, type VIII, alpha 2 COL6A1 0.018 collagen, type VI, alpha 1 precursor COL9A1 0.018 alpha 1 type IX collagen isoform 1 precursor COL3A1 0.018 collagen type III alpha 1 preproprotein COL5A3 0.018 collagen, type V, alpha 3 preproprotein SOX18 0.018 SRY-box 18 MLL 0.015 myeloid/lymphoid or mixed-lineage leukemia protein [... PTCH1 0.015 patched isoform L COL5A2 0.015 alpha 2 type V collagen preproprotein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.