Guide to the Human Genome
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Name: FCN2 Sequence: fasta or formatted (313aa) NCBI GI: 61744445
Description:

ficolin 2 isoform a precursor

Referenced in:

Collagen

Other entries for this name:
alt prot [275aa] ficolin 2 isoform b precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         23           2
 C cysteine            2.6          8           1
 D aspartate           6.7         21           1
 E glutamate           4.2         13           1
 F phenylalanine       4.5         14           1
 G glycine            13.7         43           3
 H histidine           1.9          6           1
 I isoleucine          1.3          4           1
 K lysine              5.1         16           1
 L leucine             9.3         29           3
 M methionine          1.9          6           1
 N asparagine          5.4         17           2
 P proline             6.1         19           2
 Q glutamine           2.9          9           1
 R arginine            5.1         16           2
 S serine              5.1         16           1
 T threonine           5.4         17           1
 V valine              5.4         17           1
 W tryptophan          2.6          8           2
 Y tyrosine            3.5         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ficolin 2 isoform a precursor 
FCN2                  0.829   ficolin 2 isoform b precursor 
FCN1                  0.764   ficolin 1 precursor 
FCN3                  0.423   ficolin 3 isoform 1 precursor 
FCN3                  0.408   ficolin 3 isoform 2 precursor 
FIBCD1                0.322   fibrinogen C domain containing 1 
FIBCD1                0.322   fibrinogen C domain containing 1 
MFAP4                 0.307   microfibrillar-associated protein 4 
TNR                   0.290   tenascin R 
TNN                   0.270   tenascin N 
TNXB                  0.267   tenascin XB isoform 2 
TNXB                  0.267   tenascin XB isoform 1 precursor 
TNC                   0.265   tenascin C precursor 
ANGPTL7               0.262   angiopoietin-like 7 
ANGPTL2               0.259   angiopoietin-like 2 precursor 
ANGPTL1               0.251   angiopoietin-like 1 precursor 
FGL1                  0.243   fibrinogen-like 1 precursor 
FGL1                  0.243   fibrinogen-like 1 precursor 
FGL1                  0.243   fibrinogen-like 1 precursor 
FGL1                  0.243   fibrinogen-like 1 precursor 
ANGPT1                0.236   angiopoietin 1 
ANGPTL6               0.226   angiopoietin-like 6 
FGA                   0.220   fibrinogen, alpha polypeptide isoform alpha-E preprop...
FGG                   0.216   fibrinogen, gamma chain isoform gamma-B precursor [H...
FGG                   0.216   fibrinogen, gamma chain isoform gamma-A precursor [H...
ANGPT4                0.214   angiopoietin 4 
ANGPT2                0.212   angiopoietin 2 isoform c precursor 
ANGPT2                0.212   angiopoietin 2 isoform b precursor 
ANGPT2                0.212   angiopoietin 2 isoform a precursor 
FGL2                  0.211   fibrinogen-like 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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