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Search of human proteins with 45238854
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|45238854 basic leucine zipper transcription factor, ATF-like
2 [Homo sapiens]
(274 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|45238854 basic leucine zipper transcription factor, ATF-like ... 566 e-162
gi|5453563 basic leucine zipper transcription factor, ATF-like [... 77 1e-14
gi|8924246 basic leucine zipper transcription factor, ATF-like 3... 77 2e-14
gi|194239643 activating transcription factor 7 isoform 3 [Homo s... 47 1e-05
gi|5802980 activating transcription factor 7 isoform 2 [Homo sap... 47 1e-05
gi|194239640 activating transcription factor 7 isoform 1 [Homo s... 47 1e-05
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 45 9e-05
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 45 9e-05
gi|59938776 cAMP responsive element binding protein 5 isoform de... 45 9e-05
gi|59938774 cAMP responsive element binding protein 5 isoform be... 45 9e-05
gi|59938772 cAMP responsive element binding protein 5 isoform ga... 45 9e-05
gi|59938770 cAMP responsive element binding protein 5 isoform al... 45 9e-05
gi|56550067 cAMP responsive element binding protein 3-like 2 [Ho... 42 4e-04
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 41 0.001
gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 41 0.001
gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 41 0.001
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 41 0.001
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 41 0.001
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 41 0.001
gi|22538422 activating transcription factor 2 [Homo sapiens] 40 0.002
gi|40353729 Ras and Rab interactor 3 [Homo sapiens] 40 0.002
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 40 0.003
gi|237757308 synaptojanin 1 isoform b [Homo sapiens] 40 0.003
gi|4504421 hepatic leukemia factor [Homo sapiens] 40 0.003
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 39 0.004
gi|24307909 ral guanine nucleotide dissociation stimulator isofo... 39 0.004
gi|108796058 ral guanine nucleotide dissociation stimulator isof... 39 0.004
gi|237757312 synaptojanin 1 isoform c [Homo sapiens] 39 0.005
gi|167466190 forkhead box P3 isoform b [Homo sapiens] 39 0.005
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 39 0.005
>gi|45238854 basic leucine zipper transcription factor, ATF-like 2
[Homo sapiens]
Length = 274
Score = 566 bits (1458), Expect = e-162
Identities = 274/274 (100%), Positives = 274/274 (100%)
Query: 1 MHLCGGNGLLTQTDPKEQQRQLKKQKNRAAAQRSRQKHTDKADALHQQHESLEKDNLALR 60
MHLCGGNGLLTQTDPKEQQRQLKKQKNRAAAQRSRQKHTDKADALHQQHESLEKDNLALR
Sbjct: 1 MHLCGGNGLLTQTDPKEQQRQLKKQKNRAAAQRSRQKHTDKADALHQQHESLEKDNLALR 60
Query: 61 KEIQSLQAELAWWSRTLHVHERLCPMDCASCSAPGLLGCWDQAEGLLGPGPQGQHGCREQ 120
KEIQSLQAELAWWSRTLHVHERLCPMDCASCSAPGLLGCWDQAEGLLGPGPQGQHGCREQ
Sbjct: 61 KEIQSLQAELAWWSRTLHVHERLCPMDCASCSAPGLLGCWDQAEGLLGPGPQGQHGCREQ 120
Query: 121 LELFQTPGSCYPAQPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLSPSPLLFASH 180
LELFQTPGSCYPAQPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLSPSPLLFASH
Sbjct: 121 LELFQTPGSCYPAQPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLSPSPLLFASH 180
Query: 181 TGSSLQGSSSKLSALQPSLTAQTAPPQPLELEHPTRGKLGSSPDNPSSALGLARLQSREH 240
TGSSLQGSSSKLSALQPSLTAQTAPPQPLELEHPTRGKLGSSPDNPSSALGLARLQSREH
Sbjct: 181 TGSSLQGSSSKLSALQPSLTAQTAPPQPLELEHPTRGKLGSSPDNPSSALGLARLQSREH 240
Query: 241 KPALSAATWQGLVVDPSPHPLLAFPLLSSAQVHF 274
KPALSAATWQGLVVDPSPHPLLAFPLLSSAQVHF
Sbjct: 241 KPALSAATWQGLVVDPSPHPLLAFPLLSSAQVHF 274
>gi|5453563 basic leucine zipper transcription factor, ATF-like
[Homo sapiens]
Length = 125
Score = 77.4 bits (189), Expect = 1e-14
Identities = 39/83 (46%), Positives = 54/83 (65%)
Query: 12 QTDPKEQQRQLKKQKNRAAAQRSRQKHTDKADALHQQHESLEKDNLALRKEIQSLQAELA 71
Q + +R +++KNR AAQ+SRQ+ T KAD LH + E LEK N ALRKEI+ L EL
Sbjct: 21 QDSSDDVRRVQRREKNRIAAQKSRQRQTQKADTLHLESEDLEKQNAALRKEIKQLTEELK 80
Query: 72 WWSRTLHVHERLCPMDCASCSAP 94
+++ L+ HE LC + AS +P
Sbjct: 81 YFTSVLNSHEPLCSVLAASTPSP 103
>gi|8924246 basic leucine zipper transcription factor, ATF-like 3
[Homo sapiens]
Length = 127
Score = 76.6 bits (187), Expect = 2e-14
Identities = 36/76 (47%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 12 QTDPKEQQRQLKK-QKNRAAAQRSRQKHTDKADALHQQHESLEKDNLALRKEIQSLQAEL 70
Q P++ R++++ +KNR AAQRSR+K T KAD LH+++ESLE++N LR+EI L EL
Sbjct: 29 QQSPEDDDRKVRRREKNRVAAQRSRKKQTQKADKLHEEYESLEQENTMLRREIGKLTEEL 88
Query: 71 AWWSRTLHVHERLCPM 86
+ L HE++CP+
Sbjct: 89 KHLTEALKEHEKMCPL 104
>gi|194239643 activating transcription factor 7 isoform 3 [Homo
sapiens]
Length = 462
Score = 47.4 bits (111), Expect = 1e-05
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 5 GGNGLLTQTDPKEQQRQLKKQKNRAAAQRSRQKHTDKADALHQQHESLEKDNLALRKEIQ 64
GG T + +++RQ ++NRAAA R RQK +L ++ E L N+ L E+
Sbjct: 299 GGRRRRTVDEDPDERRQRFLERNRAAASRCRQKRKLWVSSLEKKAEELTSQNIQLSNEVT 358
Query: 65 SLQAELAWWSRTLHVHERLCPMDCASCSAPGLL-GCWDQAEGLLGPGPQGQH 115
L+ E+A + L H+ CP+ G L + +E P P QH
Sbjct: 359 LLRNEVAQLKQLLLAHKD-CPVTALQKKTQGYLESPKESSEPTGSPAPVIQH 409
>gi|5802980 activating transcription factor 7 isoform 2 [Homo
sapiens]
Length = 483
Score = 47.4 bits (111), Expect = 1e-05
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 5 GGNGLLTQTDPKEQQRQLKKQKNRAAAQRSRQKHTDKADALHQQHESLEKDNLALRKEIQ 64
GG T + +++RQ ++NRAAA R RQK +L ++ E L N+ L E+
Sbjct: 320 GGRRRRTVDEDPDERRQRFLERNRAAASRCRQKRKLWVSSLEKKAEELTSQNIQLSNEVT 379
Query: 65 SLQAELAWWSRTLHVHERLCPMDCASCSAPGLL-GCWDQAEGLLGPGPQGQH 115
L+ E+A + L H+ CP+ G L + +E P P QH
Sbjct: 380 LLRNEVAQLKQLLLAHKD-CPVTALQKKTQGYLESPKESSEPTGSPAPVIQH 430
>gi|194239640 activating transcription factor 7 isoform 1 [Homo
sapiens]
Length = 494
Score = 47.4 bits (111), Expect = 1e-05
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 5 GGNGLLTQTDPKEQQRQLKKQKNRAAAQRSRQKHTDKADALHQQHESLEKDNLALRKEIQ 64
GG T + +++RQ ++NRAAA R RQK +L ++ E L N+ L E+
Sbjct: 331 GGRRRRTVDEDPDERRQRFLERNRAAASRCRQKRKLWVSSLEKKAEELTSQNIQLSNEVT 390
Query: 65 SLQAELAWWSRTLHVHERLCPMDCASCSAPGLL-GCWDQAEGLLGPGPQGQH 115
L+ E+A + L H+ CP+ G L + +E P P QH
Sbjct: 391 LLRNEVAQLKQLLLAHKD-CPVTALQKKTQGYLESPKESSEPTGSPAPVIQH 441
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 44.7 bits (104), Expect = 9e-05
Identities = 47/164 (28%), Positives = 68/164 (41%), Gaps = 17/164 (10%)
Query: 106 LLGPGPQGQHGCREQLELFQTPGSCYPAQPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAE 165
L P PQ + + L Q P S P+ P+ P SP + P S P +A
Sbjct: 420 LATPSPQAPNALA--VHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPP-SQAPPSLAA 476
Query: 166 PPVQLSPSPLLFASHTGSSLQGSSSKLSALQPSLTAQTAPPQ--------PLE-LEHPTR 216
PP+Q+ PSP + S+ + P L PPQ PL+ L P
Sbjct: 477 PPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPA 536
Query: 217 GKLGSSPDNPSSALGLARLQS--REHKPALSAATWQGLVVDPSP 258
G +P +PS++L ++ L + + P L+A Q V PSP
Sbjct: 537 SFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQ---VPPSP 577
Score = 33.1 bits (74), Expect = 0.27
Identities = 41/149 (27%), Positives = 52/149 (34%), Gaps = 20/149 (13%)
Query: 125 QTPGSCYPAQPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLSP----SPLLFASH 180
Q S P+ PLSP L P P P +A PP+Q P SP L
Sbjct: 375 QATHSFLPSPPLSP----------LATPPPQ---APPALALPPLQAPPSPPASPPLSPLA 421
Query: 181 TGSSLQGSSSKLSALQPSLTAQTAPPQPLELEHPTRGKLGSSPDNPSSA---LGLARLQS 237
T S ++ + LQ + +PP P + S PS A L LQ
Sbjct: 422 TPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQV 481
Query: 238 REHKPALSAATWQGLVVDPSPHPLLAFPL 266
PA + +P PL A PL
Sbjct: 482 PPSPPASPPMSPSATPPPQAPPPLAAPPL 510
Score = 32.3 bits (72), Expect = 0.46
Identities = 41/149 (27%), Positives = 55/149 (36%), Gaps = 12/149 (8%)
Query: 89 ASCSAPGLLGCWDQAEGLLGPGPQGQHGCREQLELFQTPGSCYPA---QPLSPGPQPHDS 145
A ++PG + +A G PGP GQ G R E G A LS G + S
Sbjct: 106 AKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTS 165
Query: 146 PSLLQCPLPSL-----SLGPAV-VAEPPVQLSPSPLLFASHTGSSLQGSSSKLSALQPSL 199
P P++ + G V + P P P S S+S+ S +PS
Sbjct: 166 GPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVS---SASEHSTTEPSP 222
Query: 200 TAQTAPPQPLELEHPTRGKLGSSPDNPSS 228
A+ P L+ P L SS SS
Sbjct: 223 AARRRPSAGGGLQRPASRSLSSSATPLSS 251
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 44.7 bits (104), Expect = 9e-05
Identities = 47/164 (28%), Positives = 68/164 (41%), Gaps = 17/164 (10%)
Query: 106 LLGPGPQGQHGCREQLELFQTPGSCYPAQPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAE 165
L P PQ + + L Q P S P+ P+ P SP + P S P +A
Sbjct: 381 LATPSPQAPNALA--VHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPP-SQAPPSLAA 437
Query: 166 PPVQLSPSPLLFASHTGSSLQGSSSKLSALQPSLTAQTAPPQ--------PLE-LEHPTR 216
PP+Q+ PSP + S+ + P L PPQ PL+ L P
Sbjct: 438 PPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPA 497
Query: 217 GKLGSSPDNPSSALGLARLQS--REHKPALSAATWQGLVVDPSP 258
G +P +PS++L ++ L + + P L+A Q V PSP
Sbjct: 498 SFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQ---VPPSP 538
Score = 33.1 bits (74), Expect = 0.27
Identities = 41/149 (27%), Positives = 52/149 (34%), Gaps = 20/149 (13%)
Query: 125 QTPGSCYPAQPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLSP----SPLLFASH 180
Q S P+ PLSP L P P P +A PP+Q P SP L
Sbjct: 336 QATHSFLPSPPLSP----------LATPPPQ---APPALALPPLQAPPSPPASPPLSPLA 382
Query: 181 TGSSLQGSSSKLSALQPSLTAQTAPPQPLELEHPTRGKLGSSPDNPSSA---LGLARLQS 237
T S ++ + LQ + +PP P + S PS A L LQ
Sbjct: 383 TPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQV 442
Query: 238 REHKPALSAATWQGLVVDPSPHPLLAFPL 266
PA + +P PL A PL
Sbjct: 443 PPSPPASPPMSPSATPPPQAPPPLAAPPL 471
Score = 32.3 bits (72), Expect = 0.46
Identities = 41/149 (27%), Positives = 55/149 (36%), Gaps = 12/149 (8%)
Query: 89 ASCSAPGLLGCWDQAEGLLGPGPQGQHGCREQLELFQTPGSCYPA---QPLSPGPQPHDS 145
A ++PG + +A G PGP GQ G R E G A LS G + S
Sbjct: 97 AKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTS 156
Query: 146 PSLLQCPLPSL-----SLGPAV-VAEPPVQLSPSPLLFASHTGSSLQGSSSKLSALQPSL 199
P P++ + G V + P P P S S+S+ S +PS
Sbjct: 157 GPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVS---SASEHSTTEPSP 213
Query: 200 TAQTAPPQPLELEHPTRGKLGSSPDNPSS 228
A+ P L+ P L SS SS
Sbjct: 214 AARRRPSAGGGLQRPASRSLSSSATPLSS 242
Score = 29.3 bits (64), Expect = 3.9
Identities = 37/132 (28%), Positives = 47/132 (35%), Gaps = 19/132 (14%)
Query: 154 PSLSLGPAVVAEPPVQLSPSPLLFASHTGSSLQG--------SSSKLSALQPSLTAQTAP 205
PS G A + S +PL + +G S +G S K LQ Q P
Sbjct: 219 PSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTP 278
Query: 206 PQPLELEHPTRGKLGSSP---------DNPSSALGLARLQSREHKPALSAATWQGLVVDP 256
P+ + P G L SSP +PS+ L L S P A T G
Sbjct: 279 PR--KDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQ 336
Query: 257 SPHPLLAFPLLS 268
+ H L P LS
Sbjct: 337 ATHSFLPSPPLS 348
>gi|59938776 cAMP responsive element binding protein 5 isoform delta
[Homo sapiens]
Length = 369
Score = 44.7 bits (104), Expect = 9e-05
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 14 DPKEQQRQLKKQKNRAAAQRSRQKHTDKADALHQQHESLEKDNLALRKEIQSLQAELAWW 73
DP E++R+ ++NRAAA R RQK +L ++ E L + N+ L+ E+ L+ E+A
Sbjct: 234 DPDERRRKFL-ERNRAAATRCRQKRKVWVMSLEKKAEELTQTNMQLQNEVSMLKNEVAQL 292
Query: 74 SRTLHVHERLCPMDCASCSAPGLL 97
+ L H+ CP+ + G L
Sbjct: 293 KQLLLTHKD-CPITAMQKESQGYL 315
>gi|59938774 cAMP responsive element binding protein 5 isoform beta
[Homo sapiens]
Length = 501
Score = 44.7 bits (104), Expect = 9e-05
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 14 DPKEQQRQLKKQKNRAAAQRSRQKHTDKADALHQQHESLEKDNLALRKEIQSLQAELAWW 73
DP E++R+ ++NRAAA R RQK +L ++ E L + N+ L+ E+ L+ E+A
Sbjct: 366 DPDERRRKFL-ERNRAAATRCRQKRKVWVMSLEKKAEELTQTNMQLQNEVSMLKNEVAQL 424
Query: 74 SRTLHVHERLCPMDCASCSAPGLL 97
+ L H+ CP+ + G L
Sbjct: 425 KQLLLTHKD-CPITAMQKESQGYL 447
>gi|59938772 cAMP responsive element binding protein 5 isoform gamma
[Homo sapiens]
Length = 475
Score = 44.7 bits (104), Expect = 9e-05
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 14 DPKEQQRQLKKQKNRAAAQRSRQKHTDKADALHQQHESLEKDNLALRKEIQSLQAELAWW 73
DP E++R+ ++NRAAA R RQK +L ++ E L + N+ L+ E+ L+ E+A
Sbjct: 340 DPDERRRKFL-ERNRAAATRCRQKRKVWVMSLEKKAEELTQTNMQLQNEVSMLKNEVAQL 398
Query: 74 SRTLHVHERLCPMDCASCSAPGLL 97
+ L H+ CP+ + G L
Sbjct: 399 KQLLLTHKD-CPITAMQKESQGYL 421
>gi|59938770 cAMP responsive element binding protein 5 isoform alpha
[Homo sapiens]
Length = 508
Score = 44.7 bits (104), Expect = 9e-05
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 14 DPKEQQRQLKKQKNRAAAQRSRQKHTDKADALHQQHESLEKDNLALRKEIQSLQAELAWW 73
DP E++R+ ++NRAAA R RQK +L ++ E L + N+ L+ E+ L+ E+A
Sbjct: 373 DPDERRRKFL-ERNRAAATRCRQKRKVWVMSLEKKAEELTQTNMQLQNEVSMLKNEVAQL 431
Query: 74 SRTLHVHERLCPMDCASCSAPGLL 97
+ L H+ CP+ + G L
Sbjct: 432 KQLLLTHKD-CPITAMQKESQGYL 454
>gi|56550067 cAMP responsive element binding protein 3-like 2 [Homo
sapiens]
Length = 520
Score = 42.4 bits (98), Expect = 4e-04
Identities = 20/58 (34%), Positives = 39/58 (67%)
Query: 10 LTQTDPKEQQRQLKKQKNRAAAQRSRQKHTDKADALHQQHESLEKDNLALRKEIQSLQ 67
L++++ K ++ +K KN+ +AQ SR+K + D+L ++ ES +NL LRK+++ L+
Sbjct: 287 LSKSEEKALKKIRRKIKNKISAQESRRKKKEYMDSLEKKVESCSTENLELRKKVEVLE 344
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 41.2 bits (95), Expect = 0.001
Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 24/129 (18%)
Query: 132 PAQPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAE-------PPVQLSPSPLLFASHTGSS 184
PA P +P P P L P P + P E PP Q +P+P + A+ T S
Sbjct: 512 PAAPSTPAPPPAVPKELPAPPAPPPASAPTPETEPEEPAQAPPAQSTPTPGVAAAPTLVS 571
Query: 185 LQGSSSKLSA-------LQPSLTAQTAPPQPLELEHPTR----------GKLGSSPDNPS 227
GS+S S+ ++P L ++ P P E+ PT +G + PS
Sbjct: 572 GGGSTSSTSSGSFEASPVEPQLPSKEGPEPPEEVPPPTTPPVPKVEPKGDGIGPTRQPPS 631
Query: 228 SALGLARLQ 236
LG + Q
Sbjct: 632 QGLGYPKYQ 640
>gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 40.8 bits (94), Expect = 0.001
Identities = 37/119 (31%), Positives = 43/119 (36%), Gaps = 18/119 (15%)
Query: 125 QTPGSCYPAQPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAE---------PPVQLSPSPL 175
QT G P P PGP PH P P PS L PP PS +
Sbjct: 1671 QTAGHHLPPPPPPPGPAPHHHPP----PHPSTGLQGLQAQHQHVVNSAPPPPPPPPPSSV 1726
Query: 176 LFASHTGSSLQG---SSSKLSALQPSLTAQTAPPQPLELEHPTRGKLGSSPDNPSSALG 231
L + H +S Q + L PS T PP P + H T LG P + S G
Sbjct: 1727 LASGHHTTSAQALHHPPHQGPPLFPSSAHPTVPPYPSQATHHT--TLGPGPQHQPSGTG 1783
Score = 28.9 bits (63), Expect = 5.1
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 131 YPAQP-----LSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQL-SPSPLLFASHTGS 183
YP+Q L PGPQ S + CPLP GP + + P + +P+ F H GS
Sbjct: 1761 YPSQATHHTTLGPGPQHQPSGTGPHCPLP--VTGPHLQPQGPNSIPTPTASGFCPHPGS 1817
>gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 40.8 bits (94), Expect = 0.001
Identities = 37/119 (31%), Positives = 43/119 (36%), Gaps = 18/119 (15%)
Query: 125 QTPGSCYPAQPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAE---------PPVQLSPSPL 175
QT G P P PGP PH P P PS L PP PS +
Sbjct: 1671 QTAGHHLPPPPPPPGPAPHHHPP----PHPSTGLQGLQAQHQHVVNSAPPPPPPPPPSSV 1726
Query: 176 LFASHTGSSLQG---SSSKLSALQPSLTAQTAPPQPLELEHPTRGKLGSSPDNPSSALG 231
L + H +S Q + L PS T PP P + H T LG P + S G
Sbjct: 1727 LASGHHTTSAQALHHPPHQGPPLFPSSAHPTVPPYPSQATHHT--TLGPGPQHQPSGTG 1783
Score = 28.9 bits (63), Expect = 5.1
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 131 YPAQP-----LSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQL-SPSPLLFASHTGS 183
YP+Q L PGPQ S + CPLP GP + + P + +P+ F H GS
Sbjct: 1761 YPSQATHHTTLGPGPQHQPSGTGPHCPLP--VTGPHLQPQGPNSIPTPTASGFCPHPGS 1817
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 40.8 bits (94), Expect = 0.001
Identities = 44/148 (29%), Positives = 60/148 (40%), Gaps = 22/148 (14%)
Query: 106 LLGPGPQGQHGCREQLELFQTPGSCYPAQPL---SPGPQPHDSPSLL-----QCPLPSLS 157
L+ P C L + P P PL S PH PS L Q PLP LS
Sbjct: 764 LIPTDPSSPPPCPPVLTVATPPPPLLPTVPLPAPSSSASPHPCPSPLSNATAQSPLPILS 823
Query: 158 --LGPAVVAEPPVQLSPSPLLFASHTG----SSLQGSSSKLSALQPSLTAQTAPPQPLEL 211
+ P+ PPV+ PL+ A+ G SS SSS S+ S ++ + P PL
Sbjct: 824 PTVSPSPSPIPPVE----PLMSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLS- 878
Query: 212 EHPTRGKLGSSPDNPSSALGLARLQSRE 239
+ SS DN ++L + + E
Sbjct: 879 ---AISSVVSSGDNLEASLPMISFKQEE 903
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 40.8 bits (94), Expect = 0.001
Identities = 44/148 (29%), Positives = 60/148 (40%), Gaps = 22/148 (14%)
Query: 106 LLGPGPQGQHGCREQLELFQTPGSCYPAQPL---SPGPQPHDSPSLL-----QCPLPSLS 157
L+ P C L + P P PL S PH PS L Q PLP LS
Sbjct: 965 LIPTDPSSPPPCPPVLTVATPPPPLLPTVPLPAPSSSASPHPCPSPLSNATAQSPLPILS 1024
Query: 158 --LGPAVVAEPPVQLSPSPLLFASHTG----SSLQGSSSKLSALQPSLTAQTAPPQPLEL 211
+ P+ PPV+ PL+ A+ G SS SSS S+ S ++ + P PL
Sbjct: 1025 PTVSPSPSPIPPVE----PLMSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLS- 1079
Query: 212 EHPTRGKLGSSPDNPSSALGLARLQSRE 239
+ SS DN ++L + + E
Sbjct: 1080 ---AISSVVSSGDNLEASLPMISFKQEE 1104
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 40.8 bits (94), Expect = 0.001
Identities = 44/148 (29%), Positives = 60/148 (40%), Gaps = 22/148 (14%)
Query: 106 LLGPGPQGQHGCREQLELFQTPGSCYPAQPL---SPGPQPHDSPSLL-----QCPLPSLS 157
L+ P C L + P P PL S PH PS L Q PLP LS
Sbjct: 965 LIPTDPSSPPPCPPVLTVATPPPPLLPTVPLPAPSSSASPHPCPSPLSNATAQSPLPILS 1024
Query: 158 --LGPAVVAEPPVQLSPSPLLFASHTG----SSLQGSSSKLSALQPSLTAQTAPPQPLEL 211
+ P+ PPV+ PL+ A+ G SS SSS S+ S ++ + P PL
Sbjct: 1025 PTVSPSPSPIPPVE----PLMSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLS- 1079
Query: 212 EHPTRGKLGSSPDNPSSALGLARLQSRE 239
+ SS DN ++L + + E
Sbjct: 1080 ---AISSVVSSGDNLEASLPMISFKQEE 1104
>gi|22538422 activating transcription factor 2 [Homo sapiens]
Length = 505
Score = 40.4 bits (93), Expect = 0.002
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 14 DPKEQQRQLKKQKNRAAAQRSRQKHTDKADALHQQHESLEKDNLALRKEIQSLQAELAWW 73
DP E++R+ ++NRAAA R RQK +L ++ E L N L+ E+ L+ E+A
Sbjct: 350 DPDEKRRKFL-ERNRAAASRCRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 408
Query: 74 SRTLHVHERLCPM 86
+ L H+ CP+
Sbjct: 409 KQLLLAHKD-CPV 420
>gi|40353729 Ras and Rab interactor 3 [Homo sapiens]
Length = 985
Score = 40.0 bits (92), Expect = 0.002
Identities = 40/150 (26%), Positives = 56/150 (37%), Gaps = 23/150 (15%)
Query: 117 CREQLELFQTP-GSCYPAQPLSP-----GPQPHDSPSLLQCPLPSLSLGPAVVAEPPV-- 168
C L Q P G+C PA+PL P P +P P P L L P A+PPV
Sbjct: 243 CSSALPTDQPPLGNC-PARPLPPTSDATSPTSRWAPRRPPPPPPVLPLQPCSPAQPPVLP 301
Query: 169 QLSPSPLLFASHTGSSLQGSSSKLSALQPSLTAQTAPPQPLELEHPTRGKLGSSPDNPSS 228
L+P+P + L P P P +HP + + + P
Sbjct: 302 ALAPAP--------------ACPLPTSPPVPAPHVTPHAPGPPDHPNQPPMMTCERLPCP 347
Query: 229 ALGLARLQSREHKPALSAATWQGLVVDPSP 258
GL L+ KP +++ Q + P P
Sbjct: 348 TAGLGPLREEAMKPGAASSPLQQVPAPPLP 377
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 39.7 bits (91), Expect = 0.003
Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 7/132 (5%)
Query: 127 PGSCYPAQPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLSPSPLLFASHTGSSLQ 186
P P+ G P SP C P++S GP V P++ S +P S T
Sbjct: 1066 PQHLQPSSSSGLGTSPSSSPRTSPCQSPTISEGP--VPSLPIRPSRAP----SRTPGPPS 1119
Query: 187 GSSSKLSALQPSLTAQTAPPQPLELEHPTRGKLGSSPDNPSSALGLARLQSREHKPALSA 246
SS + A + Q P QPLE + P + + P P+ S PA +
Sbjct: 1120 AQSSPIDAQPATPLPQKDPAQPLEPKRPPPPRPVAPPTRPAPP-QRPPPPSGARSPAPTR 1178
Query: 247 ATWQGLVVDPSP 258
+ G+ PSP
Sbjct: 1179 KEFGGIGAPPSP 1190
>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
Length = 1350
Score = 39.7 bits (91), Expect = 0.003
Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 7/132 (5%)
Query: 127 PGSCYPAQPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLSPSPLLFASHTGSSLQ 186
P P+ G P SP C P++S GP V P++ S +P S T
Sbjct: 1066 PQHLQPSSSSGLGTSPSSSPRTSPCQSPTISEGP--VPSLPIRPSRAP----SRTPGPPS 1119
Query: 187 GSSSKLSALQPSLTAQTAPPQPLELEHPTRGKLGSSPDNPSSALGLARLQSREHKPALSA 246
SS + A + Q P QPLE + P + + P P+ S PA +
Sbjct: 1120 AQSSPIDAQPATPLPQKDPAQPLEPKRPPPPRPVAPPTRPAPP-QRPPPPSGARSPAPTR 1178
Query: 247 ATWQGLVVDPSP 258
+ G+ PSP
Sbjct: 1179 KEFGGIGAPPSP 1190
>gi|4504421 hepatic leukemia factor [Homo sapiens]
Length = 295
Score = 39.7 bits (91), Expect = 0.003
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 14 DPKEQQRQLKKQKNRAAAQRSRQKHTDKADALHQQHESLEKDNLALRKEIQSLQAELAWW 73
D K+ + +++KN AA+RSR K + + + LEK+N ALR+E+ L+ EL
Sbjct: 222 DLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVADLRKELGKC 281
Query: 74 SRTLHVHE 81
L +E
Sbjct: 282 KNILAKYE 289
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 39.3 bits (90), Expect = 0.004
Identities = 60/258 (23%), Positives = 96/258 (37%), Gaps = 47/258 (18%)
Query: 12 QTDPKEQQRQLKKQKNRAAAQRSRQKHTDKADALHQQHESLEKDNLALRKEIQSLQAELA 71
Q ++QQ+QL++Q+ + Q+ +Q + Q + ++ + L + ++L +
Sbjct: 3930 QLQQQQQQQQLQQQQQQQLQQQQQQLQQQQQQQQQQFQQQQQQQQMGLLNQSRTLLSPQQ 3989
Query: 72 WWSRTLHVHERLCPMDCASCSAPGLLG----CWDQAEGLLGP--------GPQGQHGCRE 119
+ + + + S+PG LG + + + P GP G
Sbjct: 3990 QQQQQVALGPGMPAKPLQHFSSPGALGPTLLLTGKEQNTVDPAVSSEATEGPSTHQGGPL 4049
Query: 120 QL-----ELFQTPGSCYPA-----QPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQ 169
+ + PG P+ Q L PQP PS LQ P L L P Q
Sbjct: 4050 AIGTTPESMATEPGEVKPSLSGDSQLLLVQPQPQPQPSSLQLQ-PPLRL-------PGQQ 4101
Query: 170 LSPSPLLFASHTGSSLQ---GSSSKLSAL-----QPSLTAQTAP---------PQPLELE 212
LL + GS Q GSSS+ S++ QPS++ P PQ LE
Sbjct: 4102 QQQVSLLHTAGGGSHGQLGSGSSSEASSVPHLLAQPSVSLGDQPGSMTQNLLGPQQPMLE 4161
Query: 213 HPTRGKLGSSPDNPSSAL 230
P + G P P L
Sbjct: 4162 RPMQNNTGPQPPKPGPVL 4179
Score = 37.7 bits (86), Expect = 0.011
Identities = 50/160 (31%), Positives = 63/160 (39%), Gaps = 45/160 (28%)
Query: 135 PLSPGPQ-PHDSPSLLQCPLPS-LSLGPAVVAEPPVQLSPSPLL---FASHTG----SSL 185
PLSP P+ P + P QCP P L L P PP + S SPLL S G S L
Sbjct: 859 PLSPRPEKPPEEPG--QCPAPEELPLFP-----PPGEPSLSPLLGEPALSEPGEPPLSPL 911
Query: 186 QGSSSKLSALQPSLTAQTAPPQPL--------------------ELEHPTRGKLGSSPDN 225
+ +PSL+ Q PP PL ELE+P K S P++
Sbjct: 912 PEELPLSPSGEPSLSPQLMPPDPLPPPLSPIITAAAPPALSPLGELEYPFGAKGDSDPES 971
Query: 226 PSSALGLARLQSREHKPALSAATWQGLVVDPSPHPLLAFP 265
P L L++ P + T DP P P + P
Sbjct: 972 P---LAAPILETPISPPPEANCT------DPEPVPPMILP 1002
Score = 35.4 bits (80), Expect = 0.054
Identities = 54/198 (27%), Positives = 74/198 (37%), Gaps = 43/198 (21%)
Query: 21 QLKKQKNRAAAQRSRQKHTDKADALHQQHESLEKDNLALRKEIQSLQAELAWWSRTLHVH 80
QL+ Q A+ + +H QQ + L+ L +++++Q QA V
Sbjct: 4196 QLRAQLQGVLAKNPQLRHLSP-----QQQQQLQA--LLMQRQLQQSQA----------VR 4238
Query: 81 ERLCPMDCASCSAP--GLLGCWDQAEGLLGPGPQGQHGCREQLELFQTPGSCYPAQPLSP 138
+ + + ++P GLLGC Q G PGPQ P Q L
Sbjct: 4239 QTPPYQEPGTQTSPLQGLLGCQPQLGGF--PGPQ-----------------TGPLQELGA 4279
Query: 139 GPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLSPSPLLFASHTGSSLQGSSSKL--SALQ 196
GP+P P L P +LS GP + P SP S L SS+L A
Sbjct: 4280 GPRP-QGPPRLPAPPGALSTGPVLGPVHPTPPPSSPQ--EPKRPSQLPSPSSQLPTEAQL 4336
Query: 197 PSLTAQTAPPQPLELEHP 214
P T PQ LE P
Sbjct: 4337 PPTHPGTPKPQGPTLEPP 4354
Score = 30.8 bits (68), Expect = 1.3
Identities = 37/120 (30%), Positives = 44/120 (36%), Gaps = 25/120 (20%)
Query: 127 PGSC---YPAQPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLSPSPLLFASHTGS 183
PGS Y PL+P PQP P P + A PP L P S +
Sbjct: 2371 PGSYTDPYAQPPLTPRPQP---------PPPE-----SCCALPPRSLPSDPF---SRVPA 2413
Query: 184 SLQGSSSKLSALQP-SLTAQTAPPQPLELEHPTRGKLGSSPDNPSSALGLARLQSREHKP 242
S Q SS S L P L+A+ P P+ + P P S A L HKP
Sbjct: 2414 SPQSQSSSQSPLTPRPLSAEAFCPSPVTPRFQSPDPYSRPPSRPQSRDPFAPL----HKP 2469
Score = 30.4 bits (67), Expect = 1.7
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 14/76 (18%)
Query: 132 PAQPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLSPSPLLFASHTGSSLQGSSSK 191
P PL+P P + L++ P L AEPPV PSPL A SS + + K
Sbjct: 4917 PPSPLAPSPASPPTEPLVELPTEPL-------AEPPV---PSPLPLA----SSPESARPK 4962
Query: 192 LSALQPSLTAQTAPPQ 207
A P + PP+
Sbjct: 4963 PRARPPEEGEDSRPPR 4978
Score = 28.5 bits (62), Expect = 6.6
Identities = 61/240 (25%), Positives = 87/240 (36%), Gaps = 42/240 (17%)
Query: 27 NRAAAQRSRQKHTDKADALHQQHESLEKDNLALR------KEIQSLQAELAWWSRTLHVH 80
N A AQ+ +Q+H+ A +L NLALR + +Q Q +L + + +
Sbjct: 3674 NTALAQQQQQQHSGGAGSLAGPSGGFFPGNLALRSLGPDSRLLQERQLQLQ--QQRMQLA 3731
Query: 81 ERLCPMDCASCSAPGLLG-CWDQAEGLLGPGPQGQHGCREQLELFQTPGSCYPAQPLSPG 139
++L LLG Q + GPG Q + + P S
Sbjct: 3732 QKLQQQQQQQQQQQHLLGQVAIQQQQQQGPGVQTNQALGPKPQGLMPPSSHQGLLVQQLS 3791
Query: 140 PQPHDSPSLLQCPLPSLSLGPAVVA----EPPVQLSP-----SPLLFASHTGSSLQGSSS 190
PQP P + LGPA VA + P L P L+ S SS Q +
Sbjct: 3792 PQPPQGPQGM--------LGPAQVAVLQQQHPGALGPQGPHRQVLMTQSRVLSSPQLAQQ 3843
Query: 191 KLSALQPSLTAQTAPPQPLELEHPTRGKLGSSPDNPSSALGLARLQ----SREHKPALSA 246
+ L TA Q + +H +G S GL+ LQ S +P LSA
Sbjct: 3844 GQGLMGHRLV--TAQQQQQQQQHQQQG----------SMAGLSHLQQSLMSHSGQPKLSA 3891
>gi|24307909 ral guanine nucleotide dissociation stimulator isoform
1 [Homo sapiens]
Length = 914
Score = 39.3 bits (90), Expect = 0.004
Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 9/113 (7%)
Query: 132 PAQPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLSPSPLLFASHTGSSLQGSSSK 191
PA+ SP P P P P P L A P +Q +P P + L+ + +
Sbjct: 279 PARAPSPVPAPAPEPEPAPTPAPGSELEVAPAPAPELQQAPEPAV-------GLESAPAP 331
Query: 192 LSALQPSLTAQTAPPQPLELEHPTRGKLGSSPDNPSSALGLARLQSREHKPAL 244
L+P+ AP Q LELE P PS + L E KP L
Sbjct: 332 ALELEPAPEQDPAPSQTLELEPAPAPVPSLQPSWPSPVVAENGLS--EEKPHL 382
>gi|108796058 ral guanine nucleotide dissociation stimulator isoform
2 [Homo sapiens]
Length = 859
Score = 39.3 bits (90), Expect = 0.004
Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 9/113 (7%)
Query: 132 PAQPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLSPSPLLFASHTGSSLQGSSSK 191
PA+ SP P P P P P L A P +Q +P P + L+ + +
Sbjct: 224 PARAPSPVPAPAPEPEPAPTPAPGSELEVAPAPAPELQQAPEPAV-------GLESAPAP 276
Query: 192 LSALQPSLTAQTAPPQPLELEHPTRGKLGSSPDNPSSALGLARLQSREHKPAL 244
L+P+ AP Q LELE P PS + L E KP L
Sbjct: 277 ALELEPAPEQDPAPSQTLELEPAPAPVPSLQPSWPSPVVAENGLS--EEKPHL 327
>gi|237757312 synaptojanin 1 isoform c [Homo sapiens]
Length = 1295
Score = 38.9 bits (89), Expect = 0.005
Identities = 42/150 (28%), Positives = 54/150 (36%), Gaps = 17/150 (11%)
Query: 127 PGSCYPAQPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLSPSPLLFASHTGSSLQ 186
P P+ G P SP C P++S GP V P++ S +P S T
Sbjct: 1027 PQHLQPSSSSGLGTSPSSSPRTSPCQSPTISEGP--VPSLPIRPSRAP----SRTPGPPS 1080
Query: 187 GSSSKLSALQPSLTAQTAPPQPLE---------LEHPTRGKLGSSPDNPSSALGLARLQS 237
SS + A + Q P QPLE + PTR P PS A A +
Sbjct: 1081 AQSSPIDAQPATPLPQKDPAQPLEPKRPPPPRPVAPPTRPAPPQRPPPPSGARSPAPTRK 1140
Query: 238 REHKPALSAATWQGLV--VDPSPHPLLAFP 265
P T + + PSP LA P
Sbjct: 1141 EFGAPKSPGTTRKDNIGRSQPSPQAGLAGP 1170
>gi|167466190 forkhead box P3 isoform b [Homo sapiens]
Length = 396
Score = 38.9 bits (89), Expect = 0.005
Identities = 42/146 (28%), Positives = 59/146 (40%), Gaps = 28/146 (19%)
Query: 138 PGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLSP--SPLLFASHTGSSLQGSSSKLSAL 195
P P+P PS PSL+LGP+ A P + +P S LL A G + QG + A
Sbjct: 2 PNPRP-GKPSA-----PSLALGPSPGASPSWRAAPKASDLLGARGPGGTFQGRDLRGGAH 55
Query: 196 QPSLTAQTAPPQPLELE-------------HPTRGKLGSSPDNPSSALGLARLQSREHKP 242
S + PP L+L HP S P++A G+ L++R P
Sbjct: 56 ASSSSLNPMPPSQLQLSTVDAHARTPVLQVHPLESPAMISLTPPTTATGVFSLKARPGLP 115
Query: 243 A---LSAATWQGLVVDPSPHPLLAFP 265
+++ W V P L FP
Sbjct: 116 PGINVASLEW----VSREPALLCTFP 137
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 38.9 bits (89), Expect = 0.005
Identities = 34/128 (26%), Positives = 48/128 (37%), Gaps = 19/128 (14%)
Query: 119 EQLELFQTPGSCYPAQPLSPGPQPHDSPSLLQCPLPSLSLGPAVVAEPPVQLSPSPLLFA 178
E +EL+ A P +PGP P P Q P P P +P ++ S
Sbjct: 43 EPMELYGEHAKAVAALPCAPGPPPQPPP---QPPPPQYDYPPQSTFKPKAEVPSS----- 94
Query: 179 SHTGSSLQGSSSKLSALQPSLTAQTAPPQPLELEHPTRGKLGSSPDN------PSSALGL 232
S + SS SSS S+ S ++Q P P P G+ P P+ G+
Sbjct: 95 SSSSSSSSSSSSSSSSSSSSSSSQAKKPDP-----PLPPAFGAPPPPLFDAAFPTPQWGI 149
Query: 233 ARLQSREH 240
L +H
Sbjct: 150 VDLSGHQH 157
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,963,967
Number of Sequences: 37866
Number of extensions: 853739
Number of successful extensions: 5372
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 457
Number of HSP's that attempted gapping in prelim test: 4554
Number of HSP's gapped (non-prelim): 1157
length of query: 274
length of database: 18,247,518
effective HSP length: 101
effective length of query: 173
effective length of database: 14,423,052
effective search space: 2495187996
effective search space used: 2495187996
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.