Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ATF7 Sequence: fasta or formatted (494aa) NCBI GI: 194239640
Description:

activating transcription factor 7 isoform 1

Referenced in:

CREB / ATF Family

Other entries for this name:
alt prot [462aa] activating transcription factor 7 isoform 3
alt prot [483aa] activating transcription factor 7 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         39           3
 C cysteine            1.4          7           1
 D aspartate           3.4         17           2
 E glutamate           6.1         30           3
 F phenylalanine       1.6          8           1
 G glycine             5.3         26           2
 H histidine           2.8         14           1
 I isoleucine          3.8         19           2
 K lysine              5.3         26           2
 L leucine             7.9         39           3
 M methionine          2.8         14           1
 N asparagine          2.8         14           1
 P proline            12.1         60           2
 Q glutamine           5.5         27           1
 R arginine            5.5         27           4
 S serine             11.1         55           2
 T threonine           7.1         35           1
 V valine              6.9         34           2
 W tryptophan          0.2          1           1
 Y tyrosine            0.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   activating transcription factor 7 isoform 1 
ATF7                  0.972   activating transcription factor 7 isoform 2 
ATF7                  0.913   activating transcription factor 7 isoform 3 
ATF2                  0.478   activating transcription factor 2 
CREB5                 0.331   cAMP responsive element binding protein 5 isoform be...
CREB5                 0.331   cAMP responsive element binding protein 5 isoform al...
CREB5                 0.291   cAMP responsive element binding protein 5 isoform ga...
CREB5                 0.203   cAMP responsive element binding protein 5 isoform de...
JUN                   0.054   jun oncogene 
JUND                  0.050   jun D proto-oncogene 
FOSL1                 0.037   FOS-like antigen 1 
RAPH1                 0.036   Ras association and pleckstrin homology domains 1 is...
FLJ22184              0.036   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.036   PREDICTED: hypothetical protein LOC80164 
FOSL2                 0.036   FOS-like antigen 2 
FLJ22184              0.035   PREDICTED: hypothetical protein FLJ22184 
JUNB                  0.035   jun B proto-oncogene 
BCL9L                 0.033   B-cell CLL/lymphoma 9-like 
FOSB                  0.032   FBJ murine osteosarcoma viral oncogene homolog B is...
CREB3L1               0.031   cAMP responsive element binding protein 3-like 1 [Ho...
ATF3                  0.031   activating transcription factor 3 isoform 1 
ATF3                  0.031   activating transcription factor 3 isoform 1 
CEBPB                 0.030   CCAAT/enhancer binding protein beta 
SRCAP                 0.029   Snf2-related CBP activator protein 
RREB1                 0.029   ras responsive element binding protein 1 isoform 2 [...
RREB1                 0.029   ras responsive element binding protein 1 isoform 1 [...
WNK4                  0.028   WNK lysine deficient protein kinase 4 
ATF6B                 0.028   activating transcription factor 6 beta isoform a [Ho...
ATF6B                 0.027   activating transcription factor 6 beta isoform b [H...
MLL2                  0.026   myeloid/lymphoid or mixed-lineage leukemia 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press