Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RIN3 Sequence: fasta or formatted (985aa) NCBI GI: 40353729
Description:

Ras and Rab interactor 3

Referenced in:

Rab
Ras

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         82           2
 C cysteine            2.3         23           1
 D aspartate           4.2         41           2
 E glutamate           7.1         70           6
 F phenylalanine       2.7         27           1
 G glycine             5.2         51           8
 H histidine           2.2         22           1
 I isoleucine          3.0         30           1
 K lysine              4.7         46           3
 L leucine            11.4        112           2
 M methionine          2.6         26           2
 N asparagine          2.1         21           2
 P proline            11.2        110           6
 Q glutamine           4.9         48           2
 R arginine            5.6         55           3
 S serine              9.0         89           3
 T threonine           5.3         52           4
 V valine              5.4         53           2
 W tryptophan          0.5          5           1
 Y tyrosine            2.2         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Ras and Rab interactor 3 
RIN2                  0.152   Ras and Rab interactor 2 
RIN1                  0.071   ras inhibitor RIN1 
RINL                  0.053   Ras and Rab interactor-like 
FLJ22184              0.032   PREDICTED: hypothetical protein FLJ22184 
BRD4                  0.030   bromodomain-containing protein 4 isoform long 
MLL2                  0.030   myeloid/lymphoid or mixed-lineage leukemia 2 
FLJ22184              0.028   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.027   PREDICTED: hypothetical protein LOC80164 
PCLO                  0.026   piccolo isoform 2 
PCLO                  0.026   piccolo isoform 1 
NACA                  0.025   nascent polypeptide-associated complex alpha subuni...
PRG4                  0.025   proteoglycan 4 isoform D 
PRG4                  0.025   proteoglycan 4 isoform C 
PRG4                  0.025   proteoglycan 4 isoform B 
PRG4                  0.025   proteoglycan 4 isoform A 
RAPH1                 0.025   Ras association and pleckstrin homology domains 1 is...
GLTSCR1               0.024   glioma tumor suppressor candidate region gene 1 [Ho...
YLPM1                 0.023   YLP motif containing 1 
MLL4                  0.023   myeloid/lymphoid or mixed-lineage leukemia 4 
SYNJ1                 0.022   synaptojanin 1 isoform a 
SYNJ1                 0.022   synaptojanin 1 isoform b 
IQSEC2                0.022   IQ motif and Sec7 domain 2 isoform1 
CASKIN2               0.022   cask-interacting protein 2 isoform b 
CASKIN2               0.022   cask-interacting protein 2 isoform a 
MUC2                  0.022   mucin 2 precursor 
WIPF3                 0.021   WAS/WASL interacting protein family, member 3 [Homo...
KIAA0754              0.021   hypothetical protein LOC643314 
PELP1                 0.021   proline, glutamic acid and leucine rich protein 1 [...
WIPF1                 0.021   WAS/WASL interacting protein family, member 1 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press