Guide to the Human Genome
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Name: SYNJ1 Sequence: fasta or formatted (1295aa) NCBI GI: 237757312
Description:

synaptojanin 1 isoform c

Referenced in:

Inositol Pathways
Synapses

Other entries for this name:
alt prot [1350aa] synaptojanin 1 isoform b
alt prot [1612aa] synaptojanin 1 isoform a
alt prot [1526aa] synaptojanin 1 isoform d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         96           2
 C cysteine            1.3         17           1
 D aspartate           5.1         66           2
 E glutamate           6.1         79           3
 F phenylalanine       4.8         62           2
 G glycine             6.3         82           2
 H histidine           1.9         25           1
 I isoleucine          4.4         57           2
 K lysine              5.4         70           2
 L leucine             9.5        123           3
 M methionine          1.7         22           1
 N asparagine          3.6         47           2
 P proline             7.3         95           4
 Q glutamine           5.3         68           2
 R arginine            5.6         73           3
 S serine              9.7        126           4
 T threonine           5.2         67           2
 V valine              6.0         78           2
 W tryptophan          1.2         16           1
 Y tyrosine            2.0         26           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   synaptojanin 1 isoform c 
SYNJ1                 0.996   synaptojanin 1 isoform b 
SYNJ1                 0.991   synaptojanin 1 isoform a 
SYNJ1                 0.958   synaptojanin 1 isoform d 
SYNJ2                 0.445   synaptojanin 2 
INPP5B                0.072   inositol polyphosphate-5-phosphatase, 75kDa precurs...
OCRL                  0.070   phosphatidylinositol polyphosphate 5-phosphatase iso...
OCRL                  0.070   phosphatidylinositol polyphosphate 5-phosphatase iso...
SACM1L                0.069   suppressor of actin 1 
INPP5F                0.065   inositol polyphosphate-5-phosphatase F 
INPP5D                0.056   SH2 containing inositol phosphatase isoform b 
INPP5D                0.056   SH2 containing inositol phosphatase isoform a 
INPP5J                0.052   phosphatidylinositol (4,5) bisphosphate 5-phosphatas...
INPPL1                0.052   inositol polyphosphate phosphatase-like 1 
INPP5E                0.043   inositol polyphosphate-5-phosphatase E 
INPP5K                0.042   inositol polyphosphate-5-phosphatase K isoform 1 [Ho...
FIG4                  0.041   Sac domain-containing inositol phosphatase 3 
INPP5K                0.039   inositol polyphosphate-5-phosphatase K isoform 2 [H...
INPP5K                0.039   inositol polyphosphate-5-phosphatase K isoform 2 [Ho...
PRB2                  0.028   proline-rich protein BstNI subfamily 2 
PRG4                  0.027   proteoglycan 4 isoform D 
PRG4                  0.027   proteoglycan 4 isoform C 
PRG4                  0.027   proteoglycan 4 isoform B 
PRG4                  0.027   proteoglycan 4 isoform A 
NACA                  0.026   nascent polypeptide-associated complex alpha subuni...
PRB1                  0.025   proline-rich protein BstNI subfamily 1 isoform 1 pre...
WBP11                 0.024   WW domain binding protein 11 
MUC2                  0.023   mucin 2 precursor 
PRB3                  0.023   proline-rich protein BstNI subfamily 3 precursor [H...
PTPN23                0.023   protein tyrosine phosphatase, non-receptor type 23 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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