Guide to the Human Genome
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Name: LOC100133142 Sequence: fasta or formatted (1059aa) NCBI GI: 239757409
Description:

PREDICTED: similar to zinc finger protein 208

Not currently referenced in the text

Other entries for this name:
alt prot {1059aa} PREDICTED: similar to zinc finger protein 208
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.0        127           7
 C cysteine            4.4         47           2
 D aspartate           2.7         29           2
 E glutamate           3.7         39           1
 F phenylalanine       4.2         44           2
 G glycine            12.2        129           4
 H histidine           5.5         58           2
 I isoleucine          0.8          9           2
 K lysine              4.8         51           2
 L leucine             7.7         82           3
 M methionine          0.8          8           1
 N asparagine          0.9         10           1
 P proline            11.2        119           4
 Q glutamine           3.5         37           1
 R arginine            6.3         67           2
 S serine              8.5         90          25
 T threonine           3.3         35           2
 V valine              4.4         47           2
 W tryptophan          0.5          5           1
 Y tyrosine            2.5         26           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to zinc finger protein 208 [Homo... 
LOC100133142          0.999   PREDICTED: similar to zinc finger protein 208 [Homo...
ZNF721                0.147   zinc finger protein 721 
ZNF814                0.143   zinc finger protein 814 
ZNF227                0.137   zinc finger protein 227 
ZNF268                0.135   zinc finger protein 268 
ZNF229                0.134   zinc finger protein 229 
ZNF135                0.126   zinc finger protein 135 
ZNF45                 0.124   zinc finger protein 45 
ZNF418                0.124   zinc finger protein 418 
ZNF16                 0.122   zinc finger protein 16 
ZNF16                 0.122   zinc finger protein 16 
ZNF471                0.121   zinc finger protein 471 
ZSCAN2                0.121   zinc finger protein 29 isoform 1 
ZNF226                0.121   zinc finger protein 226 isoform a 
ZNF226                0.121   zinc finger protein 226 isoform a 
ZNF835                0.119   zinc finger protein 835 
ZNF345                0.117   zinc finger protein 345 
ZNF728                0.117   PREDICTED: zinc finger protein 728 
ZNF728                0.117   PREDICTED: zinc finger protein 728 
ZNF728                0.117   PREDICTED: zinc finger protein 728 
ZNF23                 0.117   zinc finger protein 23 
ZNF629                0.117   zinc finger protein 629 
ZNF571                0.115   zinc finger protein 571 
ZFP28                 0.115   zinc finger protein 28 
ZNF256                0.114   zinc finger protein 256 
ZNF551                0.112   zinc finger protein 551 
ZNF628                0.112   zinc finger protein 628 
ZNF235                0.109   zinc finger protein 93 homolog 
MZF1                  0.107   zinc finger protein 42 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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