Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: BATF Sequence: fasta or formatted (125aa) NCBI GI: 5453563
Description:

basic leucine zipper transcription factor, ATF-like

Referenced in:

Jun / Fos Complexes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2          9           2
 C cysteine            0.8          1           1
 D aspartate           5.6          7           2
 E glutamate           7.2          9           2
 F phenylalanine       3.2          4           1
 G glycine             0.8          1           1
 H histidine           4.8          6           1
 I isoleucine          1.6          2           1
 K lysine              6.4          8           1
 L leucine             7.2          9           1
 M methionine          0.8          1           1
 N asparagine          2.4          3           1
 P proline             8.8         11           3
 Q glutamine           8.0         10           1
 R arginine            8.0         10           2
 S serine             16.0         20           2
 T threonine           4.0          5           1
 V valine              5.6          7           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   basic leucine zipper transcription factor, ATF-like [... 
BATF3                 0.332   basic leucine zipper transcription factor, ATF-like 3...
BATF2                 0.230   basic leucine zipper transcription factor, ATF-like ...
ATF3                  0.181   activating transcription factor 3 isoform 1 
ATF3                  0.181   activating transcription factor 3 isoform 1 
JDP2                  0.177   Jun dimerization protein 2 isoform b 
JDP2                  0.177   Jun dimerization protein 2 isoform a 
JDP2                  0.177   Jun dimerization protein 2 isoform a 
JDP2                  0.177   Jun dimerization protein 2 isoform a 
FOSL1                 0.155   FOS-like antigen 1 
FOSL2                 0.155   FOS-like antigen 2 
FOSB                  0.142   FBJ murine osteosarcoma viral oncogene homolog B is...
FOS                   0.137   v-fos FBJ murine osteosarcoma viral oncogene homolog ...
TEF                   0.097   thyrotrophic embryonic factor isoform 2 
TEF                   0.097   thyrotrophic embryonic factor isoform 1 
HLF                   0.093   hepatic leukemia factor 
DBP                   0.088   D site of albumin promoter (albumin D-box) binding p...
JUND                  0.084   jun D proto-oncogene 
CEBPG                 0.084   CCAAT/enhancer binding protein gamma 
DDIT3                 0.080   DNA-damage-inducible transcript 3 
ATF4                  0.075   activating transcription factor 4 
ATF4                  0.075   activating transcription factor 4 
ATF7                  0.075   activating transcription factor 7 isoform 3 
ATF7                  0.075   activating transcription factor 7 isoform 2 
ATF7                  0.075   activating transcription factor 7 isoform 1 
ATF2                  0.075   activating transcription factor 2 
CREB5                 0.066   cAMP responsive element binding protein 5 isoform de...
CREB5                 0.066   cAMP responsive element binding protein 5 isoform be...
CREB5                 0.066   cAMP responsive element binding protein 5 isoform ga...
CREB5                 0.066   cAMP responsive element binding protein 5 isoform al...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press