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Search of human proteins with 4507753
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4507753 tyrosinase precursor [Homo sapiens]
(529 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4507753 tyrosinase precursor [Homo sapiens] 1124 0.0
gi|4507757 tyrosinase-related protein 1 precursor [Homo sapiens] 407 e-113
gi|6041667 dopachrome tautomerase isoform 1 [Homo sapiens] 397 e-110
gi|193788640 dopachrome tautomerase isoform 2 [Homo sapiens] 381 e-105
gi|61743978 stabilin 1 precursor [Homo sapiens] 42 0.001
gi|33598931 scavenger receptor class F, member 1 isoform 3 precu... 36 0.099
gi|33598929 scavenger receptor class F, member 1 isoform 1 precu... 36 0.099
gi|145309306 scavenger receptor class F, member 1 isoform 5 prec... 36 0.099
gi|14192943 multiple EGF-like-domains 10 [Homo sapiens] 35 0.17
gi|145553959 elaC homolog 2 [Homo sapiens] 35 0.22
gi|21264602 laminin alpha 5 [Homo sapiens] 33 0.49
gi|181336739 multiple EGF-like-domains 11 [Homo sapiens] 33 0.84
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 32 1.1
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 32 1.1
gi|40807489 egf-like module containing, mucin-like, hormone rece... 32 1.1
gi|122937343 platelet endothelial aggregation receptor 1 [Homo s... 32 1.4
gi|61743980 stabilin 2 precursor [Homo sapiens] 32 1.4
gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens] 32 1.4
gi|4503173 coxsackie virus and adenovirus receptor precursor [Ho... 32 1.9
gi|148612831 kinesin family member 18A [Homo sapiens] 31 2.5
gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens] 31 2.5
gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens] 31 2.5
gi|143770880 laminin, beta 4 [Homo sapiens] 31 3.2
gi|219842266 usherin isoform B [Homo sapiens] 30 4.2
gi|219842259 usherin isoform A [Homo sapiens] 30 4.2
gi|157384973 tenascin R [Homo sapiens] 30 4.2
gi|144226234 metastasis suppressor 1 [Homo sapiens] 30 4.2
gi|145309326 laminin, gamma 1 precursor [Homo sapiens] 30 5.5
gi|16933525 unc5C [Homo sapiens] 30 5.5
gi|40217794 hypothetical protein LOC151050 [Homo sapiens] 30 5.5
>gi|4507753 tyrosinase precursor [Homo sapiens]
Length = 529
Score = 1124 bits (2907), Expect = 0.0
Identities = 529/529 (100%), Positives = 529/529 (100%)
Query: 1 MLLAVLYCLLWSFQTSAGHFPRACVSSKNLMEKECCPPWSGDRSPCGQLSGRGSCQNILL 60
MLLAVLYCLLWSFQTSAGHFPRACVSSKNLMEKECCPPWSGDRSPCGQLSGRGSCQNILL
Sbjct: 1 MLLAVLYCLLWSFQTSAGHFPRACVSSKNLMEKECCPPWSGDRSPCGQLSGRGSCQNILL 60
Query: 61 SNAPLGPQFPFTGVDDRESWPSVFYNRTCQCSGNFMGFNCGNCKFGFWGPNCTERRLLVR 120
SNAPLGPQFPFTGVDDRESWPSVFYNRTCQCSGNFMGFNCGNCKFGFWGPNCTERRLLVR
Sbjct: 61 SNAPLGPQFPFTGVDDRESWPSVFYNRTCQCSGNFMGFNCGNCKFGFWGPNCTERRLLVR 120
Query: 121 RNIFDLSAPEKDKFFAYLTLAKHTISSDYVIPIGTYGQMKNGSTPMFNDINIYDLFVWMH 180
RNIFDLSAPEKDKFFAYLTLAKHTISSDYVIPIGTYGQMKNGSTPMFNDINIYDLFVWMH
Sbjct: 121 RNIFDLSAPEKDKFFAYLTLAKHTISSDYVIPIGTYGQMKNGSTPMFNDINIYDLFVWMH 180
Query: 181 YYVSMDALLGGSEIWRDIDFAHEAPAFLPWHRLFLLRWEQEIQKLTGDENFTIPYWDWRD 240
YYVSMDALLGGSEIWRDIDFAHEAPAFLPWHRLFLLRWEQEIQKLTGDENFTIPYWDWRD
Sbjct: 181 YYVSMDALLGGSEIWRDIDFAHEAPAFLPWHRLFLLRWEQEIQKLTGDENFTIPYWDWRD 240
Query: 241 AEKCDICTDEYMGGQHPTNPNLLSPASFFSSWQIVCSRLEEYNSHQSLCNGTPEGPLRRN 300
AEKCDICTDEYMGGQHPTNPNLLSPASFFSSWQIVCSRLEEYNSHQSLCNGTPEGPLRRN
Sbjct: 241 AEKCDICTDEYMGGQHPTNPNLLSPASFFSSWQIVCSRLEEYNSHQSLCNGTPEGPLRRN 300
Query: 301 PGNHDKSRTPRLPSSADVEFCLSLTQYESGSMDKAANFSFRNTLEGFASPLTGIADASQS 360
PGNHDKSRTPRLPSSADVEFCLSLTQYESGSMDKAANFSFRNTLEGFASPLTGIADASQS
Sbjct: 301 PGNHDKSRTPRLPSSADVEFCLSLTQYESGSMDKAANFSFRNTLEGFASPLTGIADASQS 360
Query: 361 SMHNALHIYMNGTMSQVQGSANDPIFLLHHAFVDSIFEQWLRRHRPLQEVYPEANAPIGH 420
SMHNALHIYMNGTMSQVQGSANDPIFLLHHAFVDSIFEQWLRRHRPLQEVYPEANAPIGH
Sbjct: 361 SMHNALHIYMNGTMSQVQGSANDPIFLLHHAFVDSIFEQWLRRHRPLQEVYPEANAPIGH 420
Query: 421 NRESYMVPFIPLYRNGDFFISSKDLGYDYSYLQDSDPDSFQDYIKSYLEQASRIWSWLLG 480
NRESYMVPFIPLYRNGDFFISSKDLGYDYSYLQDSDPDSFQDYIKSYLEQASRIWSWLLG
Sbjct: 421 NRESYMVPFIPLYRNGDFFISSKDLGYDYSYLQDSDPDSFQDYIKSYLEQASRIWSWLLG 480
Query: 481 AAMVGAVLTALLAGLVSLLCRHKRKQLPEEKQPLLMEKEDYHSLYQSHL 529
AAMVGAVLTALLAGLVSLLCRHKRKQLPEEKQPLLMEKEDYHSLYQSHL
Sbjct: 481 AAMVGAVLTALLAGLVSLLCRHKRKQLPEEKQPLLMEKEDYHSLYQSHL 529
>gi|4507757 tyrosinase-related protein 1 precursor [Homo sapiens]
Length = 537
Score = 407 bits (1045), Expect = e-113
Identities = 220/538 (40%), Positives = 311/538 (57%), Gaps = 33/538 (6%)
Query: 3 LAVLYCLLWSFQTSAGHFPRACVSSKNLMEKECCPPWSGDRSP----CGQLSGRGSCQNI 58
L ++ L FQ + FPR C + + L CCP S P CG SGRG C+ +
Sbjct: 9 LGCIFFPLLLFQQARAQFPRQCATVEALRSGMCCPDLSPVSGPGTDRCGSSSGRGRCEAV 68
Query: 59 LLSNAPLGPQFPFTGVDDRESWPSVFYNRTCQCSGNFMGFNCGNCKFGFWGPNCTERRLL 118
+ P PQ+P G DDRE WP F+NRTC C+GNF G NCG C+ G+ G C +R L+
Sbjct: 69 TADSRPHSPQYPHDGRDDREVWPLRFFNRTCHCNGNFSGHNCGTCRPGWRGAACDQRVLI 128
Query: 119 VRRNIFDLSAPEKDKFFAYLTLAKHTISSDYVIPIGTYGQM--KNGSTPMFNDINIYDLF 176
VRRN+ DLS EK+ F L +AK T +VI ++ +G+TP F +I+IY+ F
Sbjct: 129 VRRNLLDLSKEEKNHFVRALDMAKRTTHPLFVIATRRSEEILGPDGNTPQFENISIYNYF 188
Query: 177 VWMHYYVSMDALLG-GSEIWRDIDFAHEAPAFLPWHRLFLLRWEQEIQKLTGDENFTIPY 235
VW HYY LG G E + ++DF+HE PAFL WHR LLR E+++Q++ + +F++PY
Sbjct: 189 VWTHYYSVKKTFLGVGQESFGEVDFSHEGPAFLTWHRYHLLRLEKDMQEMLQEPSFSLPY 248
Query: 236 WDWRDAEK-CDICTDEYMGGQHPTNPNLLSPASFFSSWQIVCSRLEEYNSHQSLCNGTPE 294
W++ + CDICTD+ MG + + L+SP S FS W++VC LE+Y++ +LCN T +
Sbjct: 249 WNFATGKNVCDICTDDLMGSRSNFDSTLISPNSVFSQWRVVCDSLEDYDTLGTLCNSTED 308
Query: 295 GPLRRNP-GNHDKSRTPRLPSSADVEFCLSLTQYESGSMDKAANFSFRNTLEGFASPLTG 353
GP+RRNP GN + RLP DV CL + +++ + SFRNT+EG++ P TG
Sbjct: 309 GPIRRNPAGNVARPMVQRLPEPQDVAQCLEVGLFDTPPFYSNSTNSFRNTVEGYSDP-TG 367
Query: 354 IADASQSSMHNALHIYMNGTMSQVQGSANDPIFLLHHAFVDSIFEQWLRRHRPLQEVYPE 413
D + S+HN H+++NGT Q S NDPIF+L H F D++F++WLRR+ +P
Sbjct: 368 KYDPAVRSLHNLAHLFLNGTGGQTHLSPNDPIFVLLHTFTDAVFDEWLRRYNADISTFPL 427
Query: 414 ANAPIGHNRESYMVPFIPLYRNGDFFISSKD-LGYDYSYLQDSDPDSFQDYIKSYLEQAS 472
NAPIGHNR+ MVPF P N + F+++ D LGY Y S S +
Sbjct: 428 ENAPIGHNRQYNMVPFWPPVTNTEMFVTAPDNLGYTYEIQWPSREFSVPE---------- 477
Query: 473 RIWSWLLGAAMVGA-VLTALLAGLVSLLCRHKRKQLPEEKQPLLMEK-----EDYHSL 524
++ A+VGA +L AL+ G S L R R+ + E QPLL ++ E+Y L
Sbjct: 478 -----IIAIAVVGALLLVALIFGTASYLIR-ARRSMDEANQPLLTDQYQCYAEEYEKL 529
>gi|6041667 dopachrome tautomerase isoform 1 [Homo sapiens]
Length = 519
Score = 397 bits (1019), Expect = e-110
Identities = 193/456 (42%), Positives = 280/456 (61%), Gaps = 15/456 (3%)
Query: 2 LLAVLYCLLWSFQTSAGHFPRACVSSKNLMEKECCPPWSGDRSP-CGQLSGRGSCQNILL 60
LL+ L C + + G FPR C++ +L+ KECCP + + CG GRG C +
Sbjct: 9 LLSCLGCKI--LPGAQGQFPRVCMTVDSLVNKECCPRLGAESANVCGSQQGRGQCTEVRA 66
Query: 61 SNAPLGPQFPFTGVDDRESWPSVFYNRTCQCSGNFMGFNCGNCKFGFWGPNCTERRL-LV 119
P + DDRE WP F++RTC+C+GNF G+NCG+CKFG+ GPNC ++ ++
Sbjct: 67 DTRPWSGPYILRNQDDRELWPRKFFHRTCKCTGNFAGYNCGDCKFGWTGPNCERKKPPVI 126
Query: 120 RRNIFDLSAPEKDKFFAYLTLAKHTISSDYVIP----IGTYGQMKNGSTPMFNDINIYDL 175
R+NI LS E+++F L LAK + DYVI +G G NG+ P F + ++YD
Sbjct: 127 RQNIHSLSPQEREQFLGALDLAKKRVHPDYVITTQHWLGLLGP--NGTQPQFANCSVYDF 184
Query: 176 FVWMHYYVSMDALLGGSEIWRDIDFAHEAPAFLPWHRLFLLRWEQEIQKLTGDENFTIPY 235
FVW+HYY D LLG +R IDF+H+ PAF+ WHR LL E+++Q+L G+E+F +PY
Sbjct: 185 FVWLHYYSVRDTLLGPGRPYRAIDFSHQGPAFVTWHRYHLLCLERDLQRLIGNESFALPY 244
Query: 236 WDWRDAE-KCDICTDEYMGGQHPTNPNLLSPASFFSSWQIVCSRLEEYNSHQSLCNGTPE 294
W++ +CD+CTD+ G P +P L+S S FSSW+ VC L++YN +LCNGT E
Sbjct: 245 WNFATGRNECDVCTDQLFGAARPDDPTLISRNSRFSSWETVCDSLDDYNHLVTLCNGTYE 304
Query: 295 GPLRRNPGNHDKSRTPRLPSSADVEFCLSLTQYESGSMDKAANFSFRNTLEGFASPLTGI 354
G LRRN + + LP+ D+ CLSL ++++ + + FSFRN LEGF G
Sbjct: 305 GLLRRNQMGRNSMK---LPTLKDIRDCLSLQKFDNPPFFQNSTFSFRNALEGF-DKADGT 360
Query: 355 ADASQSSMHNALHIYMNGTMSQVQGSANDPIFLLHHAFVDSIFEQWLRRHRPLQEVYPEA 414
D+ S+HN +H ++NGT + +ANDPIF++ H+F D+IF++W++R P + +P+
Sbjct: 361 LDSQVMSLHNLVHSFLNGTNALPHSAANDPIFVVLHSFTDAIFDEWMKRFNPPADAWPQE 420
Query: 415 NAPIGHNRESYMVPFIPLYRNGDFFISSKDLGYDYS 450
APIGHNR MVPF P N + F++S LGY Y+
Sbjct: 421 LAPIGHNRMYNMVPFFPPVTNEELFLTSDQLGYSYA 456
>gi|193788640 dopachrome tautomerase isoform 2 [Homo sapiens]
Length = 552
Score = 381 bits (978), Expect = e-105
Identities = 194/489 (39%), Positives = 281/489 (57%), Gaps = 48/489 (9%)
Query: 2 LLAVLYCLLWSFQTSAGHFPRACVSSKNLMEKECCPPWSGDRSP-CGQLSGRGSCQNILL 60
LL+ L C + + G FPR C++ +L+ KECCP + + CG GRG C +
Sbjct: 9 LLSCLGCKI--LPGAQGQFPRVCMTVDSLVNKECCPRLGAESANVCGSQQGRGQCTEVRA 66
Query: 61 SNAPLGPQFPFTGVDDRESWPSVFYNRTCQCSGNFMGFNCGNCKFGFWGPNCTERRL-LV 119
P + DDRE WP F++RTC+C+GNF G+NCG+CKFG+ GPNC ++ ++
Sbjct: 67 DTRPWSGPYILRNQDDRELWPRKFFHRTCKCTGNFAGYNCGDCKFGWTGPNCERKKPPVI 126
Query: 120 RRNIFDLSAPEKDKFFAYLTLAKHTISSDYVIP----IGTYGQMKNGSTPMFNDINIYDL 175
R+NI LS E+++F L LAK + DYVI +G G NG+ P F + ++YD
Sbjct: 127 RQNIHSLSPQEREQFLGALDLAKKRVHPDYVITTQHWLGLLGP--NGTQPQFANCSVYDF 184
Query: 176 FVWMHYYVSMDALLGGSEIWRDIDFAHEAPAFLPWHRLFLLRWEQEIQKLTGDENFTIPY 235
FVW+HYY D LLG +R IDF+H+ PAF+ WHR LL E+++Q+L G+E+F +PY
Sbjct: 185 FVWLHYYSVRDTLLGPGRPYRAIDFSHQGPAFVTWHRYHLLCLERDLQRLIGNESFALPY 244
Query: 236 WDWRDA-EKCDICTDEYMGGQHPTNPNLLSPASFFSSWQIVCSRLEEYNSHQSLCNGTPE 294
W++ +CD+CTD+ G P +P L+S S FSSW+ VC L++YN +LCNGT E
Sbjct: 245 WNFATGRNECDVCTDQLFGAARPDDPTLISRNSRFSSWETVCDSLDDYNHLVTLCNGTYE 304
Query: 295 GPLRRNPGNHDKSRTPRLPSSADVEFCLSLTQYESGSMDKAANFSFRNTLEGFASPLTGI 354
G LRRN + + +LP+ D+ CLSL ++++ + + FSFRN LEGF G
Sbjct: 305 GLLRRNQMGRN---SMKLPTLKDIRDCLSLQKFDNPPFFQNSTFSFRNALEGF-DKADGT 360
Query: 355 ADASQSSMHNALHIYMNGTMSQVQGSANDPIF---------------------------- 386
D+ S+HN +H ++NGT + +ANDPIF
Sbjct: 361 LDSQVMSLHNLVHSFLNGTNALPHSAANDPIFVVISNRLLYNATTNILEHVRKEKATKEL 420
Query: 387 -----LLHHAFVDSIFEQWLRRHRPLQEVYPEANAPIGHNRESYMVPFIPLYRNGDFFIS 441
L+ H+F D+IF++W++R P + +P+ APIGHNR MVPF P N + F++
Sbjct: 421 PSLHVLVLHSFTDAIFDEWMKRFNPPADAWPQELAPIGHNRMYNMVPFFPPVTNEELFLT 480
Query: 442 SKDLGYDYS 450
S LGY Y+
Sbjct: 481 SDQLGYSYA 489
>gi|61743978 stabilin 1 precursor [Homo sapiens]
Length = 2570
Score = 42.4 bits (98), Expect = 0.001
Identities = 29/102 (28%), Positives = 37/102 (36%), Gaps = 32/102 (31%)
Query: 20 FPRAC--VSSKNLMEKECCPPWSGDR-SPC-----GQLSGRGSCQNILLSNAPLGPQFPF 71
F R C +K + +CCP + G PC G SG G CQ+ L +
Sbjct: 1303 FSRGCSYTCAKKIQVPDCCPGFFGTLCEPCPGGLGGVCSGHGQCQDRFLGSGE------- 1355
Query: 72 TGVDDRESWPSVFYNRTCQCSGNFMGFNCGNCKFGFWGPNCT 113
C C F G C C+ G +GPNCT
Sbjct: 1356 -----------------CHCHEGFHGTACEVCELGRYGPNCT 1380
Score = 33.5 bits (75), Expect = 0.49
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 37/95 (38%)
Query: 28 KNLMEKECCPPWSGDR---------SPCGQLSGRGSCQNILLSNAPLGPQFPFTGVDDRE 78
K +++K CCP + G R +PC +G G+C + G+D
Sbjct: 93 KQVVQKACCPGYWGSRCHECPGGAETPC---NGHGTCLD---------------GMDR-- 132
Query: 79 SWPSVFYNRTCQCSGNFMGFNCGNCKF-GFWGPNC 112
N TC C NF G C C+ +GP+C
Sbjct: 133 -------NGTCVCQENFRGSACQECQDPNRFGPDC 160
>gi|33598931 scavenger receptor class F, member 1 isoform 3
precursor [Homo sapiens]
Length = 569
Score = 35.8 bits (81), Expect = 0.099
Identities = 30/121 (24%), Positives = 42/121 (34%), Gaps = 31/121 (25%)
Query: 1 MLLAVLYCLLWSFQTSAGHFP----RACVSSKNLMEKECCPPWSGDRSPCGQ--LSGRGS 54
+LL +L LLW+ T CV+S E +CC W C G +
Sbjct: 5 LLLPLL--LLWTRGTQGSELDPKGQHVCVASSPSAELQCCAGWRQKDQECTIPICEGPDA 62
Query: 55 CQNILLSNAPLGPQFPFTGVDDRESWPSVFYNRTCQCSGNFMGFNCGN-CKFGFWGPNCT 113
CQ + P C+C F G +C + C +WGP+C
Sbjct: 63 CQKDEVCVKP----------------------GLCRCKPGFFGAHCSSRCPGQYWGPDCR 100
Query: 114 E 114
E
Sbjct: 101 E 101
>gi|33598929 scavenger receptor class F, member 1 isoform 1
precursor [Homo sapiens]
Length = 830
Score = 35.8 bits (81), Expect = 0.099
Identities = 30/121 (24%), Positives = 42/121 (34%), Gaps = 31/121 (25%)
Query: 1 MLLAVLYCLLWSFQTSAGHFP----RACVSSKNLMEKECCPPWSGDRSPCGQ--LSGRGS 54
+LL +L LLW+ T CV+S E +CC W C G +
Sbjct: 5 LLLPLL--LLWTRGTQGSELDPKGQHVCVASSPSAELQCCAGWRQKDQECTIPICEGPDA 62
Query: 55 CQNILLSNAPLGPQFPFTGVDDRESWPSVFYNRTCQCSGNFMGFNCGN-CKFGFWGPNCT 113
CQ + P C+C F G +C + C +WGP+C
Sbjct: 63 CQKDEVCVKP----------------------GLCRCKPGFFGAHCSSRCPGQYWGPDCR 100
Query: 114 E 114
E
Sbjct: 101 E 101
>gi|145309306 scavenger receptor class F, member 1 isoform 5
precursor [Homo sapiens]
Length = 744
Score = 35.8 bits (81), Expect = 0.099
Identities = 30/121 (24%), Positives = 42/121 (34%), Gaps = 31/121 (25%)
Query: 1 MLLAVLYCLLWSFQTSAGHFP----RACVSSKNLMEKECCPPWSGDRSPCGQ--LSGRGS 54
+LL +L LLW+ T CV+S E +CC W C G +
Sbjct: 5 LLLPLL--LLWTRGTQGSELDPKGQHVCVASSPSAELQCCAGWRQKDQECTIPICEGPDA 62
Query: 55 CQNILLSNAPLGPQFPFTGVDDRESWPSVFYNRTCQCSGNFMGFNCGN-CKFGFWGPNCT 113
CQ + P C+C F G +C + C +WGP+C
Sbjct: 63 CQKDEVCVKP----------------------GLCRCKPGFFGAHCSSRCPGQYWGPDCR 100
Query: 114 E 114
E
Sbjct: 101 E 101
>gi|14192943 multiple EGF-like-domains 10 [Homo sapiens]
Length = 1140
Score = 35.0 bits (79), Expect = 0.17
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 88 TCQCSGNFMGFNCGN-CKFGFWGPNCTER 115
TCQC + G NC + C WGP+CT R
Sbjct: 123 TCQCEPGWGGTNCSSACDGDHWGPHCTSR 151
Score = 32.3 bits (72), Expect = 1.1
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 86 NRTCQCSGNFMGFNCGN-CKFGFWGPNC 112
+R+CQC ++G +C C WGPNC
Sbjct: 685 DRSCQCYPGWIGSDCSQPCPPAHWGPNC 712
Score = 30.0 bits (66), Expect = 5.5
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 89 CQCSGNFMGFNCGN-CKFGFWGPNCT 113
C+C + G +C + C G WGPNC+
Sbjct: 557 CRCLPGWSGVHCDSVCAEGRWGPNCS 582
>gi|145553959 elaC homolog 2 [Homo sapiens]
Length = 826
Score = 34.7 bits (78), Expect = 0.22
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 371 NGTMSQVQGSANDPIFLLHH-----AFVDSIFEQWLRRHRP-LQEVYPEANAPIGHNRES 424
N T + QG A+ P+ L+ H VDS ++QW+ R P Q + N HN S
Sbjct: 323 NATFQRYQGKADAPVALVVHMAPASVLVDSRYQQWMERFGPDTQHLVLNENCASVHNLRS 382
Query: 425 YMV 427
+ +
Sbjct: 383 HKI 385
>gi|21264602 laminin alpha 5 [Homo sapiens]
Length = 3695
Score = 33.5 bits (75), Expect = 0.49
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 89 CQCSGNFMGFNCGNCKFGFWGPNC 112
C C NF G +C C GF+GP C
Sbjct: 515 CLCKPNFQGTHCELCAPGFYGPGC 538
Score = 32.3 bits (72), Expect = 1.1
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 89 CQCSGNFMGFNCGNCKFGFWG-PNC 112
C C + +G +C C G+WG PNC
Sbjct: 1457 CPCHAHVIGRDCSRCATGYWGFPNC 1481
Score = 30.0 bits (66), Expect = 5.5
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 15/57 (26%)
Query: 53 GSCQNILLSNAPLGPQFPFTGVDDRESWPSVFYNRTCQCSGNFMGFNCGNCKFGFWG 109
GSC L AP+ P P V C C + G +C CK GFWG
Sbjct: 723 GSCHPAGL--APVDPALPEAQVP-------------CMCRAHVEGPSCDRCKPGFWG 764
>gi|181336739 multiple EGF-like-domains 11 [Homo sapiens]
Length = 1044
Score = 32.7 bits (73), Expect = 0.84
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 22/84 (26%)
Query: 34 ECCPPWSGDRSPCGQLSGRG----SCQNILLSNAPLGPQFPFTGVDDRESWPSVFYNRTC 89
EC P +SG + C Q+ G C L S A G P G +C
Sbjct: 640 ECLPGFSG--ALCNQVCAGGYFGQDCAQ-LCSCANNGTCSPIDG--------------SC 682
Query: 90 QCSGNFMGFNCGN-CKFGFWGPNC 112
QC ++G +C C GFWGP C
Sbjct: 683 QCFPGWIGKDCSQACPPGFWGPAC 706
Score = 30.0 bits (66), Expect = 5.5
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 89 CQCSGNFMGFNCG-NCKFGFWGPNCT 113
C C+ FMG C +C G +GPNC+
Sbjct: 422 CTCAPGFMGEVCAVSCAAGTYGPNCS 447
Score = 29.3 bits (64), Expect = 9.3
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 88 TCQCSGNFMGFNCGN-CKFGFWGPNCTER 115
TC C + G +C + C WGP+C+ R
Sbjct: 117 TCHCEPGWGGPDCSSGCDSDHWGPHCSNR 145
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 32.3 bits (72), Expect = 1.1
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 89 CQCSGNFMGFNCGN-CKFGFWGPNCTE 114
C+C + G NC C FWGP+C E
Sbjct: 98 CRCRHGYFGANCDTKCPRQFWGPDCKE 124
Score = 30.0 bits (66), Expect = 5.5
Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 20/100 (20%)
Query: 23 ACVSSKNLMEKECCPPWSGDRSPCGQLSGRGSCQNILLSNAPLGPQFPFTGVDDRESWPS 82
AC+ + C + + SPC Q SGR C+ + F DR +
Sbjct: 199 ACLCHAGWWGRSCNNQCACNSSPCEQQSGRCQCR-----------ERTFGARCDR--YCQ 245
Query: 83 VFYNR------TCQCSGNFMGFNCGN-CKFGFWGPNCTER 115
F R TC C + G C C GF+G C R
Sbjct: 246 CFRGRCHPVDGTCACEPGYRGKYCREPCPAGFYGLGCRRR 285
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 32.3 bits (72), Expect = 1.1
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 89 CQCSGNFMGFNCGN-CKFGFWGPNCTE 114
C+C + G NC C FWGP+C E
Sbjct: 98 CRCRHGYFGANCDTKCPRQFWGPDCKE 124
Score = 30.0 bits (66), Expect = 5.5
Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 20/100 (20%)
Query: 23 ACVSSKNLMEKECCPPWSGDRSPCGQLSGRGSCQNILLSNAPLGPQFPFTGVDDRESWPS 82
AC+ + C + + SPC Q SGR C+ + F DR +
Sbjct: 199 ACLCHAGWWGRSCNNQCACNSSPCEQQSGRCQCR-----------ERTFGARCDR--YCQ 245
Query: 83 VFYNR------TCQCSGNFMGFNCGN-CKFGFWGPNCTER 115
F R TC C + G C C GF+G C R
Sbjct: 246 CFRGRCHPVDGTCACEPGYRGKYCREPCPAGFYGLGCRRR 285
>gi|40807489 egf-like module containing, mucin-like, hormone
receptor-like sequence 1 [Homo sapiens]
Length = 886
Score = 32.3 bits (72), Expect = 1.1
Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 7/101 (6%)
Query: 19 HFPRACVSSKNLMEKECCPPWSGDRSPCGQLSGRGSCQNILLSNAPLG----PQFP--FT 72
HF V K++ E P G S C LSGR C + ++P G P P F+
Sbjct: 70 HFKDPGVRCKDIDECSQSPQPCGPNSSCKNLSGRYKCSCLDGFSSPTGNDWVPGKPGNFS 129
Query: 73 GVDDRESWPSVFYNRTCQCSGNFMGFNCGNCKFGFWGPNCT 113
D E S C + ++C +C+ GF N T
Sbjct: 130 CTDINECLTSSVCPEHSDCVNSMGSYSC-SCQVGFISRNST 169
>gi|122937343 platelet endothelial aggregation receptor 1 [Homo
sapiens]
Length = 1037
Score = 32.0 bits (71), Expect = 1.4
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 89 CQCSGNFMGFNCG-NCKFGFWGPNCT 113
CQC +MG C +C G WG NC+
Sbjct: 552 CQCQAGWMGARCHLSCPEGLWGVNCS 577
Score = 30.0 bits (66), Expect = 5.5
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 86 NRTCQCSGNFMGFNCGN-CKFGFWGPNCTE 114
N TC C + G +C C G WG NC +
Sbjct: 634 NGTCYCLAGWTGPDCSQPCPPGHWGENCAQ 663
Score = 29.3 bits (64), Expect = 9.3
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 89 CQCSGNFMGFNCGN-CKFGFWGPNC 112
CQC + G +C + C G WGP C
Sbjct: 120 CQCVPGWRGDDCSSECAPGMWGPQC 144
Score = 29.3 bits (64), Expect = 9.3
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 88 TCQCSGNFMGFNCG-NCKFGFWGPNCTE 114
+C C +MG C C GF GPNC++
Sbjct: 247 SCSCPPGWMGTICSLPCPEGFHGPNCSQ 274
>gi|61743980 stabilin 2 precursor [Homo sapiens]
Length = 2551
Score = 32.0 bits (71), Expect = 1.4
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 20/88 (22%)
Query: 28 KNLMEKECCPPWSGDR-SPCGQLSGRGSCQNILLSNAPLGPQFPFTGVDDRESWPSVFYN 86
+ ++ +ECC + G + PC G+ QN+ N TGV
Sbjct: 1329 RTVITRECCAGFFGPQCQPCP-----GNAQNVCFGNGICLDGVNGTGV------------ 1371
Query: 87 RTCQCSGNFMGFNCGNCKFGFWGPNCTE 114
C+C F G C C G +G +C +
Sbjct: 1372 --CECGEGFSGTACETCTEGKYGIHCDQ 1397
Score = 29.6 bits (65), Expect = 7.1
Identities = 28/109 (25%), Positives = 39/109 (35%), Gaps = 20/109 (18%)
Query: 21 PRACVSSKNLMEKEC--CPPWSGDRSPCGQLSGRGSCQNILLSNAPLGPQFPFTGVDDRE 78
PR C K ++C CP G +PC + RG C + + F G
Sbjct: 1948 PRCC---KGYFGRDCQACP--GGPDAPC---NNRGVCLDQYSATGECKCNTGFNGTACEM 1999
Query: 79 SWPSVFYNRTC---------QCSGNFMGFNCGNCKFGFWGPNCTERRLL 118
WP F C QC G C+ G+ GP+C + +L
Sbjct: 2000 CWPGRF-GPDCLPCGCSDHGQCDDGITGSGQCLCETGWTGPSCDTQAVL 2047
>gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens]
Length = 1541
Score = 32.0 bits (71), Expect = 1.4
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 89 CQCSGNFMGFNCGN-CKFGFWGPNCT 113
C C+ + GF+C C G WGP+C+
Sbjct: 845 CSCAPGWTGFSCQRACDTGHWGPDCS 870
Score = 30.8 bits (68), Expect = 3.2
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 89 CQCSGNFMGFNCG-NCKFGFWGPNCT 113
C+C F+G +C C G +GPNCT
Sbjct: 1234 CRCPTGFLGTDCNLTCPQGRFGPNCT 1259
>gi|4503173 coxsackie virus and adenovirus receptor precursor [Homo
sapiens]
Length = 365
Score = 31.6 bits (70), Expect = 1.9
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 478 LLGAAMVGAVLTALLAGLVSLLCRHKRKQLPEEKQPLLMEKEDYHSL 524
L+ A++G +L L GL+ CR KR+ EEK EKE +H +
Sbjct: 238 LIAGAIIGTLLALALIGLIIFCCRKKRR---EEK----YEKEVHHDI 277
>gi|148612831 kinesin family member 18A [Homo sapiens]
Length = 898
Score = 31.2 bits (69), Expect = 2.5
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 255 QHPTNPNLLSPASFFSSWQIVCSRLEEYNSHQSLCNGTPEGPLRRNPGNHDKSRT 309
Q+P+ L+ P+SF +S+Q + S + N + LC R+ G D T
Sbjct: 715 QNPSTVTLMKPSSFTTSFQAISSNINSDNCLKMLCEVAIPHNRRKECGQEDLDST 769
>gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens]
Length = 3333
Score = 31.2 bits (69), Expect = 2.5
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 89 CQCSGNFMGFNCGNCKFGFWG-PNCTERRLLVRRNIFDLSAPEKD 132
C C NF G NC C G++ P C +R IF +S P +
Sbjct: 443 CHCKPNFHGDNCEKCAIGYYNFPFC------LRIPIFPVSTPSSE 481
>gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens]
Length = 3277
Score = 31.2 bits (69), Expect = 2.5
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 89 CQCSGNFMGFNCGNCKFGFWG-PNCTERRLLVRRNIFDLSAPEKD 132
C C NF G NC C G++ P C +R IF +S P +
Sbjct: 443 CHCKPNFHGDNCEKCAIGYYNFPFC------LRIPIFPVSTPSSE 481
>gi|143770880 laminin, beta 4 [Homo sapiens]
Length = 1761
Score = 30.8 bits (68), Expect = 3.2
Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 19/92 (20%)
Query: 34 ECCPPWSGDRSPCGQLSGRGSCQNIL---LSNAPLG-PQFPFTGVDDRES---------- 79
E C P +G CG + +C+ + N G P P DD S
Sbjct: 870 ELCDPETGSCFNCGGFTTGRNCERCIDGYYGNPSSGQPCRPCLCPDDPSSNQYFAHSCYQ 929
Query: 80 --WPSVFYNRTCQCSGNFMGFNCGNCKFGFWG 109
W S + C C + G CG C GF+G
Sbjct: 930 NLWSS---DVICNCLQGYTGTQCGECSTGFYG 958
Score = 29.3 bits (64), Expect = 9.3
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 12/108 (11%)
Query: 8 CLLWSFQTSAGHFPRACVSSKNLMEKE----CCPPWSGDRSPCGQLSGRGSCQNILLSNA 63
CL +S +F +C +NL + C ++G + CG+ S G N +S A
Sbjct: 911 CLCPDDPSSNQYFAHSCY--QNLWSSDVICNCLQGYTGTQ--CGECS-TGFYGNPRISGA 965
Query: 64 PLGPQFPFTGVD--DRESWPSVFYNRTCQCSGNFMGFNCGNCKFGFWG 109
P P +D D ES V +C N G NC CK G +G
Sbjct: 966 PCQPCACNNNIDVTDPESCSRVT-GECLRCLHNTQGANCQLCKPGHYG 1012
>gi|219842266 usherin isoform B [Homo sapiens]
Length = 5202
Score = 30.4 bits (67), Expect = 4.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 89 CQCSGNFMGFNCGNCKFGF 107
C+C N +G C +C FGF
Sbjct: 715 CKCKANVIGLRCDHCNFGF 733
>gi|219842259 usherin isoform A [Homo sapiens]
Length = 1546
Score = 30.4 bits (67), Expect = 4.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 89 CQCSGNFMGFNCGNCKFGF 107
C+C N +G C +C FGF
Sbjct: 715 CKCKANVIGLRCDHCNFGF 733
>gi|157384973 tenascin R [Homo sapiens]
Length = 1358
Score = 30.4 bits (67), Expect = 4.2
Identities = 31/127 (24%), Positives = 48/127 (37%), Gaps = 31/127 (24%)
Query: 16 SAGHFPRACVSSKNLMEKECC--PPWSGDRSPCGQLSGRGSCQNI-LLSNAPLGPQFPFT 72
S + P C S ++ +C +SGD C +L C + L + + P+T
Sbjct: 200 SEPYCPLGCSSRGVCVDGQCICDSEYSGD--DCSELRCPTDCSSRGLCVDGECVCEEPYT 257
Query: 73 GVDDRE-------SWPSVFYNRTCQCSGNFMGFNCGN-------------------CKFG 106
G D RE S N TC C ++G +CG C+ G
Sbjct: 258 GEDCRELRCPGDCSGKGRCANGTCLCEEGYVGEDCGQRQCLNACSGRGQCEEGLCVCEEG 317
Query: 107 FWGPNCT 113
+ GP+C+
Sbjct: 318 YQGPDCS 324
>gi|144226234 metastasis suppressor 1 [Homo sapiens]
Length = 755
Score = 30.4 bits (67), Expect = 4.2
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 264 SPASFFSSWQIVCSRLEEYNSHQSLCNGTPEGPLRRNPGNHDKSRTPRLPSSADVEFCLS 323
SP++ S VCS L NS S +G+ +P +H + R+ L A V S
Sbjct: 262 SPSTTMSRKSSVCSSLNSVNSSDSRSSGSHS----HSPSSHYRYRSSNLAQQAPVRLS-S 316
Query: 324 LTQYESGSMDKAA 336
++ ++SG + + A
Sbjct: 317 VSSHDSGFISQDA 329
>gi|145309326 laminin, gamma 1 precursor [Homo sapiens]
Length = 1609
Score = 30.0 bits (66), Expect = 5.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 89 CQCSGNFMGFNCGNCKFGFW 108
C C N GFNC CK GF+
Sbjct: 463 CVCKDNVEGFNCERCKPGFF 482
>gi|16933525 unc5C [Homo sapiens]
Length = 931
Score = 30.0 bits (66), Expect = 5.5
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 217 RWEQEIQKLTGDENFTIPYWDWRDAEKCDICTD 249
+WE + + G+ENFT P + DAE C I T+
Sbjct: 632 QWEDVV--VVGEENFTTPCYIKLDAEACHILTE 662
>gi|40217794 hypothetical protein LOC151050 [Homo sapiens]
Length = 987
Score = 30.0 bits (66), Expect = 5.5
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 440 ISSKDLGYDYSYLQDSDPDSFQDYI--KSYLEQASRIWSWLLGAAMVGAVLTALLAGLVS 497
+S + G D S D +Y K+ S W WL+ A VG+ T L A +
Sbjct: 332 LSHVEEGLDSDATDSSSDDDLDEYTLRKNVAVNCSTEWKWLVDRARVGSRWTWLQAQISD 391
Query: 498 LLCR 501
L C+
Sbjct: 392 LECK 395
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,822,459
Number of Sequences: 37866
Number of extensions: 1099703
Number of successful extensions: 2730
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2606
Number of HSP's gapped (non-prelim): 136
length of query: 529
length of database: 18,247,518
effective HSP length: 107
effective length of query: 422
effective length of database: 14,195,856
effective search space: 5990651232
effective search space used: 5990651232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.