Guide to the Human Genome
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Search of human proteins with 4507753

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4507753 tyrosinase precursor [Homo sapiens]
         (529 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4507753 tyrosinase precursor [Homo sapiens]                       1124   0.0  
gi|4507757 tyrosinase-related protein 1 precursor [Homo sapiens]      407   e-113
gi|6041667 dopachrome tautomerase isoform 1 [Homo sapiens]            397   e-110
gi|193788640 dopachrome tautomerase isoform 2 [Homo sapiens]          381   e-105
gi|61743978 stabilin 1 precursor [Homo sapiens]                        42   0.001
gi|33598931 scavenger receptor class F, member 1 isoform 3 precu...    36   0.099
gi|33598929 scavenger receptor class F, member 1 isoform 1 precu...    36   0.099
gi|145309306 scavenger receptor class F, member 1 isoform 5 prec...    36   0.099
gi|14192943 multiple EGF-like-domains 10 [Homo sapiens]                35   0.17 
gi|145553959 elaC homolog 2 [Homo sapiens]                             35   0.22 
gi|21264602 laminin alpha 5 [Homo sapiens]                             33   0.49 
gi|181336739 multiple EGF-like-domains 11 [Homo sapiens]               33   0.84 
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo...    32   1.1  
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo...    32   1.1  
gi|40807489 egf-like module containing, mucin-like, hormone rece...    32   1.1  
gi|122937343 platelet endothelial aggregation receptor 1 [Homo s...    32   1.4  
gi|61743980 stabilin 2 precursor [Homo sapiens]                        32   1.4  
gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens]                32   1.4  
gi|4503173 coxsackie virus and adenovirus receptor precursor [Ho...    32   1.9  
gi|148612831 kinesin family member 18A [Homo sapiens]                  31   2.5  
gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens]           31   2.5  
gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens]          31   2.5  
gi|143770880 laminin, beta 4 [Homo sapiens]                            31   3.2  
gi|219842266 usherin isoform B [Homo sapiens]                          30   4.2  
gi|219842259 usherin isoform A [Homo sapiens]                          30   4.2  
gi|157384973 tenascin R [Homo sapiens]                                 30   4.2  
gi|144226234 metastasis suppressor 1 [Homo sapiens]                    30   4.2  
gi|145309326 laminin, gamma 1 precursor [Homo sapiens]                 30   5.5  
gi|16933525 unc5C [Homo sapiens]                                       30   5.5  
gi|40217794 hypothetical protein LOC151050 [Homo sapiens]              30   5.5  

>gi|4507753 tyrosinase precursor [Homo sapiens]
          Length = 529

 Score = 1124 bits (2907), Expect = 0.0
 Identities = 529/529 (100%), Positives = 529/529 (100%)

Query: 1   MLLAVLYCLLWSFQTSAGHFPRACVSSKNLMEKECCPPWSGDRSPCGQLSGRGSCQNILL 60
           MLLAVLYCLLWSFQTSAGHFPRACVSSKNLMEKECCPPWSGDRSPCGQLSGRGSCQNILL
Sbjct: 1   MLLAVLYCLLWSFQTSAGHFPRACVSSKNLMEKECCPPWSGDRSPCGQLSGRGSCQNILL 60

Query: 61  SNAPLGPQFPFTGVDDRESWPSVFYNRTCQCSGNFMGFNCGNCKFGFWGPNCTERRLLVR 120
           SNAPLGPQFPFTGVDDRESWPSVFYNRTCQCSGNFMGFNCGNCKFGFWGPNCTERRLLVR
Sbjct: 61  SNAPLGPQFPFTGVDDRESWPSVFYNRTCQCSGNFMGFNCGNCKFGFWGPNCTERRLLVR 120

Query: 121 RNIFDLSAPEKDKFFAYLTLAKHTISSDYVIPIGTYGQMKNGSTPMFNDINIYDLFVWMH 180
           RNIFDLSAPEKDKFFAYLTLAKHTISSDYVIPIGTYGQMKNGSTPMFNDINIYDLFVWMH
Sbjct: 121 RNIFDLSAPEKDKFFAYLTLAKHTISSDYVIPIGTYGQMKNGSTPMFNDINIYDLFVWMH 180

Query: 181 YYVSMDALLGGSEIWRDIDFAHEAPAFLPWHRLFLLRWEQEIQKLTGDENFTIPYWDWRD 240
           YYVSMDALLGGSEIWRDIDFAHEAPAFLPWHRLFLLRWEQEIQKLTGDENFTIPYWDWRD
Sbjct: 181 YYVSMDALLGGSEIWRDIDFAHEAPAFLPWHRLFLLRWEQEIQKLTGDENFTIPYWDWRD 240

Query: 241 AEKCDICTDEYMGGQHPTNPNLLSPASFFSSWQIVCSRLEEYNSHQSLCNGTPEGPLRRN 300
           AEKCDICTDEYMGGQHPTNPNLLSPASFFSSWQIVCSRLEEYNSHQSLCNGTPEGPLRRN
Sbjct: 241 AEKCDICTDEYMGGQHPTNPNLLSPASFFSSWQIVCSRLEEYNSHQSLCNGTPEGPLRRN 300

Query: 301 PGNHDKSRTPRLPSSADVEFCLSLTQYESGSMDKAANFSFRNTLEGFASPLTGIADASQS 360
           PGNHDKSRTPRLPSSADVEFCLSLTQYESGSMDKAANFSFRNTLEGFASPLTGIADASQS
Sbjct: 301 PGNHDKSRTPRLPSSADVEFCLSLTQYESGSMDKAANFSFRNTLEGFASPLTGIADASQS 360

Query: 361 SMHNALHIYMNGTMSQVQGSANDPIFLLHHAFVDSIFEQWLRRHRPLQEVYPEANAPIGH 420
           SMHNALHIYMNGTMSQVQGSANDPIFLLHHAFVDSIFEQWLRRHRPLQEVYPEANAPIGH
Sbjct: 361 SMHNALHIYMNGTMSQVQGSANDPIFLLHHAFVDSIFEQWLRRHRPLQEVYPEANAPIGH 420

Query: 421 NRESYMVPFIPLYRNGDFFISSKDLGYDYSYLQDSDPDSFQDYIKSYLEQASRIWSWLLG 480
           NRESYMVPFIPLYRNGDFFISSKDLGYDYSYLQDSDPDSFQDYIKSYLEQASRIWSWLLG
Sbjct: 421 NRESYMVPFIPLYRNGDFFISSKDLGYDYSYLQDSDPDSFQDYIKSYLEQASRIWSWLLG 480

Query: 481 AAMVGAVLTALLAGLVSLLCRHKRKQLPEEKQPLLMEKEDYHSLYQSHL 529
           AAMVGAVLTALLAGLVSLLCRHKRKQLPEEKQPLLMEKEDYHSLYQSHL
Sbjct: 481 AAMVGAVLTALLAGLVSLLCRHKRKQLPEEKQPLLMEKEDYHSLYQSHL 529


>gi|4507757 tyrosinase-related protein 1 precursor [Homo sapiens]
          Length = 537

 Score =  407 bits (1045), Expect = e-113
 Identities = 220/538 (40%), Positives = 311/538 (57%), Gaps = 33/538 (6%)

Query: 3   LAVLYCLLWSFQTSAGHFPRACVSSKNLMEKECCPPWSGDRSP----CGQLSGRGSCQNI 58
           L  ++  L  FQ +   FPR C + + L    CCP  S    P    CG  SGRG C+ +
Sbjct: 9   LGCIFFPLLLFQQARAQFPRQCATVEALRSGMCCPDLSPVSGPGTDRCGSSSGRGRCEAV 68

Query: 59  LLSNAPLGPQFPFTGVDDRESWPSVFYNRTCQCSGNFMGFNCGNCKFGFWGPNCTERRLL 118
              + P  PQ+P  G DDRE WP  F+NRTC C+GNF G NCG C+ G+ G  C +R L+
Sbjct: 69  TADSRPHSPQYPHDGRDDREVWPLRFFNRTCHCNGNFSGHNCGTCRPGWRGAACDQRVLI 128

Query: 119 VRRNIFDLSAPEKDKFFAYLTLAKHTISSDYVIPIGTYGQM--KNGSTPMFNDINIYDLF 176
           VRRN+ DLS  EK+ F   L +AK T    +VI      ++   +G+TP F +I+IY+ F
Sbjct: 129 VRRNLLDLSKEEKNHFVRALDMAKRTTHPLFVIATRRSEEILGPDGNTPQFENISIYNYF 188

Query: 177 VWMHYYVSMDALLG-GSEIWRDIDFAHEAPAFLPWHRLFLLRWEQEIQKLTGDENFTIPY 235
           VW HYY      LG G E + ++DF+HE PAFL WHR  LLR E+++Q++  + +F++PY
Sbjct: 189 VWTHYYSVKKTFLGVGQESFGEVDFSHEGPAFLTWHRYHLLRLEKDMQEMLQEPSFSLPY 248

Query: 236 WDWRDAEK-CDICTDEYMGGQHPTNPNLLSPASFFSSWQIVCSRLEEYNSHQSLCNGTPE 294
           W++   +  CDICTD+ MG +   +  L+SP S FS W++VC  LE+Y++  +LCN T +
Sbjct: 249 WNFATGKNVCDICTDDLMGSRSNFDSTLISPNSVFSQWRVVCDSLEDYDTLGTLCNSTED 308

Query: 295 GPLRRNP-GNHDKSRTPRLPSSADVEFCLSLTQYESGSMDKAANFSFRNTLEGFASPLTG 353
           GP+RRNP GN  +    RLP   DV  CL +  +++      +  SFRNT+EG++ P TG
Sbjct: 309 GPIRRNPAGNVARPMVQRLPEPQDVAQCLEVGLFDTPPFYSNSTNSFRNTVEGYSDP-TG 367

Query: 354 IADASQSSMHNALHIYMNGTMSQVQGSANDPIFLLHHAFVDSIFEQWLRRHRPLQEVYPE 413
             D +  S+HN  H+++NGT  Q   S NDPIF+L H F D++F++WLRR+      +P 
Sbjct: 368 KYDPAVRSLHNLAHLFLNGTGGQTHLSPNDPIFVLLHTFTDAVFDEWLRRYNADISTFPL 427

Query: 414 ANAPIGHNRESYMVPFIPLYRNGDFFISSKD-LGYDYSYLQDSDPDSFQDYIKSYLEQAS 472
            NAPIGHNR+  MVPF P   N + F+++ D LGY Y     S   S  +          
Sbjct: 428 ENAPIGHNRQYNMVPFWPPVTNTEMFVTAPDNLGYTYEIQWPSREFSVPE---------- 477

Query: 473 RIWSWLLGAAMVGA-VLTALLAGLVSLLCRHKRKQLPEEKQPLLMEK-----EDYHSL 524
                ++  A+VGA +L AL+ G  S L R  R+ + E  QPLL ++     E+Y  L
Sbjct: 478 -----IIAIAVVGALLLVALIFGTASYLIR-ARRSMDEANQPLLTDQYQCYAEEYEKL 529


>gi|6041667 dopachrome tautomerase isoform 1 [Homo sapiens]
          Length = 519

 Score =  397 bits (1019), Expect = e-110
 Identities = 193/456 (42%), Positives = 280/456 (61%), Gaps = 15/456 (3%)

Query: 2   LLAVLYCLLWSFQTSAGHFPRACVSSKNLMEKECCPPWSGDRSP-CGQLSGRGSCQNILL 60
           LL+ L C +     + G FPR C++  +L+ KECCP    + +  CG   GRG C  +  
Sbjct: 9   LLSCLGCKI--LPGAQGQFPRVCMTVDSLVNKECCPRLGAESANVCGSQQGRGQCTEVRA 66

Query: 61  SNAPLGPQFPFTGVDDRESWPSVFYNRTCQCSGNFMGFNCGNCKFGFWGPNCTERRL-LV 119
              P    +     DDRE WP  F++RTC+C+GNF G+NCG+CKFG+ GPNC  ++  ++
Sbjct: 67  DTRPWSGPYILRNQDDRELWPRKFFHRTCKCTGNFAGYNCGDCKFGWTGPNCERKKPPVI 126

Query: 120 RRNIFDLSAPEKDKFFAYLTLAKHTISSDYVIP----IGTYGQMKNGSTPMFNDINIYDL 175
           R+NI  LS  E+++F   L LAK  +  DYVI     +G  G   NG+ P F + ++YD 
Sbjct: 127 RQNIHSLSPQEREQFLGALDLAKKRVHPDYVITTQHWLGLLGP--NGTQPQFANCSVYDF 184

Query: 176 FVWMHYYVSMDALLGGSEIWRDIDFAHEAPAFLPWHRLFLLRWEQEIQKLTGDENFTIPY 235
           FVW+HYY   D LLG    +R IDF+H+ PAF+ WHR  LL  E+++Q+L G+E+F +PY
Sbjct: 185 FVWLHYYSVRDTLLGPGRPYRAIDFSHQGPAFVTWHRYHLLCLERDLQRLIGNESFALPY 244

Query: 236 WDWRDAE-KCDICTDEYMGGQHPTNPNLLSPASFFSSWQIVCSRLEEYNSHQSLCNGTPE 294
           W++     +CD+CTD+  G   P +P L+S  S FSSW+ VC  L++YN   +LCNGT E
Sbjct: 245 WNFATGRNECDVCTDQLFGAARPDDPTLISRNSRFSSWETVCDSLDDYNHLVTLCNGTYE 304

Query: 295 GPLRRNPGNHDKSRTPRLPSSADVEFCLSLTQYESGSMDKAANFSFRNTLEGFASPLTGI 354
           G LRRN    +  +   LP+  D+  CLSL ++++    + + FSFRN LEGF     G 
Sbjct: 305 GLLRRNQMGRNSMK---LPTLKDIRDCLSLQKFDNPPFFQNSTFSFRNALEGF-DKADGT 360

Query: 355 ADASQSSMHNALHIYMNGTMSQVQGSANDPIFLLHHAFVDSIFEQWLRRHRPLQEVYPEA 414
            D+   S+HN +H ++NGT +    +ANDPIF++ H+F D+IF++W++R  P  + +P+ 
Sbjct: 361 LDSQVMSLHNLVHSFLNGTNALPHSAANDPIFVVLHSFTDAIFDEWMKRFNPPADAWPQE 420

Query: 415 NAPIGHNRESYMVPFIPLYRNGDFFISSKDLGYDYS 450
            APIGHNR   MVPF P   N + F++S  LGY Y+
Sbjct: 421 LAPIGHNRMYNMVPFFPPVTNEELFLTSDQLGYSYA 456


>gi|193788640 dopachrome tautomerase isoform 2 [Homo sapiens]
          Length = 552

 Score =  381 bits (978), Expect = e-105
 Identities = 194/489 (39%), Positives = 281/489 (57%), Gaps = 48/489 (9%)

Query: 2   LLAVLYCLLWSFQTSAGHFPRACVSSKNLMEKECCPPWSGDRSP-CGQLSGRGSCQNILL 60
           LL+ L C +     + G FPR C++  +L+ KECCP    + +  CG   GRG C  +  
Sbjct: 9   LLSCLGCKI--LPGAQGQFPRVCMTVDSLVNKECCPRLGAESANVCGSQQGRGQCTEVRA 66

Query: 61  SNAPLGPQFPFTGVDDRESWPSVFYNRTCQCSGNFMGFNCGNCKFGFWGPNCTERRL-LV 119
              P    +     DDRE WP  F++RTC+C+GNF G+NCG+CKFG+ GPNC  ++  ++
Sbjct: 67  DTRPWSGPYILRNQDDRELWPRKFFHRTCKCTGNFAGYNCGDCKFGWTGPNCERKKPPVI 126

Query: 120 RRNIFDLSAPEKDKFFAYLTLAKHTISSDYVIP----IGTYGQMKNGSTPMFNDINIYDL 175
           R+NI  LS  E+++F   L LAK  +  DYVI     +G  G   NG+ P F + ++YD 
Sbjct: 127 RQNIHSLSPQEREQFLGALDLAKKRVHPDYVITTQHWLGLLGP--NGTQPQFANCSVYDF 184

Query: 176 FVWMHYYVSMDALLGGSEIWRDIDFAHEAPAFLPWHRLFLLRWEQEIQKLTGDENFTIPY 235
           FVW+HYY   D LLG    +R IDF+H+ PAF+ WHR  LL  E+++Q+L G+E+F +PY
Sbjct: 185 FVWLHYYSVRDTLLGPGRPYRAIDFSHQGPAFVTWHRYHLLCLERDLQRLIGNESFALPY 244

Query: 236 WDWRDA-EKCDICTDEYMGGQHPTNPNLLSPASFFSSWQIVCSRLEEYNSHQSLCNGTPE 294
           W++     +CD+CTD+  G   P +P L+S  S FSSW+ VC  L++YN   +LCNGT E
Sbjct: 245 WNFATGRNECDVCTDQLFGAARPDDPTLISRNSRFSSWETVCDSLDDYNHLVTLCNGTYE 304

Query: 295 GPLRRNPGNHDKSRTPRLPSSADVEFCLSLTQYESGSMDKAANFSFRNTLEGFASPLTGI 354
           G LRRN    +   + +LP+  D+  CLSL ++++    + + FSFRN LEGF     G 
Sbjct: 305 GLLRRNQMGRN---SMKLPTLKDIRDCLSLQKFDNPPFFQNSTFSFRNALEGF-DKADGT 360

Query: 355 ADASQSSMHNALHIYMNGTMSQVQGSANDPIF---------------------------- 386
            D+   S+HN +H ++NGT +    +ANDPIF                            
Sbjct: 361 LDSQVMSLHNLVHSFLNGTNALPHSAANDPIFVVISNRLLYNATTNILEHVRKEKATKEL 420

Query: 387 -----LLHHAFVDSIFEQWLRRHRPLQEVYPEANAPIGHNRESYMVPFIPLYRNGDFFIS 441
                L+ H+F D+IF++W++R  P  + +P+  APIGHNR   MVPF P   N + F++
Sbjct: 421 PSLHVLVLHSFTDAIFDEWMKRFNPPADAWPQELAPIGHNRMYNMVPFFPPVTNEELFLT 480

Query: 442 SKDLGYDYS 450
           S  LGY Y+
Sbjct: 481 SDQLGYSYA 489


>gi|61743978 stabilin 1 precursor [Homo sapiens]
          Length = 2570

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 29/102 (28%), Positives = 37/102 (36%), Gaps = 32/102 (31%)

Query: 20   FPRAC--VSSKNLMEKECCPPWSGDR-SPC-----GQLSGRGSCQNILLSNAPLGPQFPF 71
            F R C    +K +   +CCP + G    PC     G  SG G CQ+  L +         
Sbjct: 1303 FSRGCSYTCAKKIQVPDCCPGFFGTLCEPCPGGLGGVCSGHGQCQDRFLGSGE------- 1355

Query: 72   TGVDDRESWPSVFYNRTCQCSGNFMGFNCGNCKFGFWGPNCT 113
                             C C   F G  C  C+ G +GPNCT
Sbjct: 1356 -----------------CHCHEGFHGTACEVCELGRYGPNCT 1380



 Score = 33.5 bits (75), Expect = 0.49
 Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 37/95 (38%)

Query: 28  KNLMEKECCPPWSGDR---------SPCGQLSGRGSCQNILLSNAPLGPQFPFTGVDDRE 78
           K +++K CCP + G R         +PC   +G G+C +               G+D   
Sbjct: 93  KQVVQKACCPGYWGSRCHECPGGAETPC---NGHGTCLD---------------GMDR-- 132

Query: 79  SWPSVFYNRTCQCSGNFMGFNCGNCKF-GFWGPNC 112
                  N TC C  NF G  C  C+    +GP+C
Sbjct: 133 -------NGTCVCQENFRGSACQECQDPNRFGPDC 160


>gi|33598931 scavenger receptor class F, member 1 isoform 3
           precursor [Homo sapiens]
          Length = 569

 Score = 35.8 bits (81), Expect = 0.099
 Identities = 30/121 (24%), Positives = 42/121 (34%), Gaps = 31/121 (25%)

Query: 1   MLLAVLYCLLWSFQTSAGHFP----RACVSSKNLMEKECCPPWSGDRSPCGQ--LSGRGS 54
           +LL +L  LLW+  T            CV+S    E +CC  W      C      G  +
Sbjct: 5   LLLPLL--LLWTRGTQGSELDPKGQHVCVASSPSAELQCCAGWRQKDQECTIPICEGPDA 62

Query: 55  CQNILLSNAPLGPQFPFTGVDDRESWPSVFYNRTCQCSGNFMGFNCGN-CKFGFWGPNCT 113
           CQ   +   P                        C+C   F G +C + C   +WGP+C 
Sbjct: 63  CQKDEVCVKP----------------------GLCRCKPGFFGAHCSSRCPGQYWGPDCR 100

Query: 114 E 114
           E
Sbjct: 101 E 101


>gi|33598929 scavenger receptor class F, member 1 isoform 1
           precursor [Homo sapiens]
          Length = 830

 Score = 35.8 bits (81), Expect = 0.099
 Identities = 30/121 (24%), Positives = 42/121 (34%), Gaps = 31/121 (25%)

Query: 1   MLLAVLYCLLWSFQTSAGHFP----RACVSSKNLMEKECCPPWSGDRSPCGQ--LSGRGS 54
           +LL +L  LLW+  T            CV+S    E +CC  W      C      G  +
Sbjct: 5   LLLPLL--LLWTRGTQGSELDPKGQHVCVASSPSAELQCCAGWRQKDQECTIPICEGPDA 62

Query: 55  CQNILLSNAPLGPQFPFTGVDDRESWPSVFYNRTCQCSGNFMGFNCGN-CKFGFWGPNCT 113
           CQ   +   P                        C+C   F G +C + C   +WGP+C 
Sbjct: 63  CQKDEVCVKP----------------------GLCRCKPGFFGAHCSSRCPGQYWGPDCR 100

Query: 114 E 114
           E
Sbjct: 101 E 101


>gi|145309306 scavenger receptor class F, member 1 isoform 5
           precursor [Homo sapiens]
          Length = 744

 Score = 35.8 bits (81), Expect = 0.099
 Identities = 30/121 (24%), Positives = 42/121 (34%), Gaps = 31/121 (25%)

Query: 1   MLLAVLYCLLWSFQTSAGHFP----RACVSSKNLMEKECCPPWSGDRSPCGQ--LSGRGS 54
           +LL +L  LLW+  T            CV+S    E +CC  W      C      G  +
Sbjct: 5   LLLPLL--LLWTRGTQGSELDPKGQHVCVASSPSAELQCCAGWRQKDQECTIPICEGPDA 62

Query: 55  CQNILLSNAPLGPQFPFTGVDDRESWPSVFYNRTCQCSGNFMGFNCGN-CKFGFWGPNCT 113
           CQ   +   P                        C+C   F G +C + C   +WGP+C 
Sbjct: 63  CQKDEVCVKP----------------------GLCRCKPGFFGAHCSSRCPGQYWGPDCR 100

Query: 114 E 114
           E
Sbjct: 101 E 101


>gi|14192943 multiple EGF-like-domains 10 [Homo sapiens]
          Length = 1140

 Score = 35.0 bits (79), Expect = 0.17
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 88  TCQCSGNFMGFNCGN-CKFGFWGPNCTER 115
           TCQC   + G NC + C    WGP+CT R
Sbjct: 123 TCQCEPGWGGTNCSSACDGDHWGPHCTSR 151



 Score = 32.3 bits (72), Expect = 1.1
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 86  NRTCQCSGNFMGFNCGN-CKFGFWGPNC 112
           +R+CQC   ++G +C   C    WGPNC
Sbjct: 685 DRSCQCYPGWIGSDCSQPCPPAHWGPNC 712



 Score = 30.0 bits (66), Expect = 5.5
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 89  CQCSGNFMGFNCGN-CKFGFWGPNCT 113
           C+C   + G +C + C  G WGPNC+
Sbjct: 557 CRCLPGWSGVHCDSVCAEGRWGPNCS 582


>gi|145553959 elaC homolog 2 [Homo sapiens]
          Length = 826

 Score = 34.7 bits (78), Expect = 0.22
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 371 NGTMSQVQGSANDPIFLLHH-----AFVDSIFEQWLRRHRP-LQEVYPEANAPIGHNRES 424
           N T  + QG A+ P+ L+ H       VDS ++QW+ R  P  Q +    N    HN  S
Sbjct: 323 NATFQRYQGKADAPVALVVHMAPASVLVDSRYQQWMERFGPDTQHLVLNENCASVHNLRS 382

Query: 425 YMV 427
           + +
Sbjct: 383 HKI 385


>gi|21264602 laminin alpha 5 [Homo sapiens]
          Length = 3695

 Score = 33.5 bits (75), Expect = 0.49
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 89  CQCSGNFMGFNCGNCKFGFWGPNC 112
           C C  NF G +C  C  GF+GP C
Sbjct: 515 CLCKPNFQGTHCELCAPGFYGPGC 538



 Score = 32.3 bits (72), Expect = 1.1
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 89   CQCSGNFMGFNCGNCKFGFWG-PNC 112
            C C  + +G +C  C  G+WG PNC
Sbjct: 1457 CPCHAHVIGRDCSRCATGYWGFPNC 1481



 Score = 30.0 bits (66), Expect = 5.5
 Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 15/57 (26%)

Query: 53  GSCQNILLSNAPLGPQFPFTGVDDRESWPSVFYNRTCQCSGNFMGFNCGNCKFGFWG 109
           GSC    L  AP+ P  P   V              C C  +  G +C  CK GFWG
Sbjct: 723 GSCHPAGL--APVDPALPEAQVP-------------CMCRAHVEGPSCDRCKPGFWG 764


>gi|181336739 multiple EGF-like-domains 11 [Homo sapiens]
          Length = 1044

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 22/84 (26%)

Query: 34  ECCPPWSGDRSPCGQLSGRG----SCQNILLSNAPLGPQFPFTGVDDRESWPSVFYNRTC 89
           EC P +SG  + C Q+   G     C   L S A  G   P  G              +C
Sbjct: 640 ECLPGFSG--ALCNQVCAGGYFGQDCAQ-LCSCANNGTCSPIDG--------------SC 682

Query: 90  QCSGNFMGFNCGN-CKFGFWGPNC 112
           QC   ++G +C   C  GFWGP C
Sbjct: 683 QCFPGWIGKDCSQACPPGFWGPAC 706



 Score = 30.0 bits (66), Expect = 5.5
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 89  CQCSGNFMGFNCG-NCKFGFWGPNCT 113
           C C+  FMG  C  +C  G +GPNC+
Sbjct: 422 CTCAPGFMGEVCAVSCAAGTYGPNCS 447



 Score = 29.3 bits (64), Expect = 9.3
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 88  TCQCSGNFMGFNCGN-CKFGFWGPNCTER 115
           TC C   + G +C + C    WGP+C+ R
Sbjct: 117 TCHCEPGWGGPDCSSGCDSDHWGPHCSNR 145


>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
           sapiens]
          Length = 870

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 89  CQCSGNFMGFNCGN-CKFGFWGPNCTE 114
           C+C   + G NC   C   FWGP+C E
Sbjct: 98  CRCRHGYFGANCDTKCPRQFWGPDCKE 124



 Score = 30.0 bits (66), Expect = 5.5
 Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 20/100 (20%)

Query: 23  ACVSSKNLMEKECCPPWSGDRSPCGQLSGRGSCQNILLSNAPLGPQFPFTGVDDRESWPS 82
           AC+       + C    + + SPC Q SGR  C+           +  F    DR  +  
Sbjct: 199 ACLCHAGWWGRSCNNQCACNSSPCEQQSGRCQCR-----------ERTFGARCDR--YCQ 245

Query: 83  VFYNR------TCQCSGNFMGFNCGN-CKFGFWGPNCTER 115
            F  R      TC C   + G  C   C  GF+G  C  R
Sbjct: 246 CFRGRCHPVDGTCACEPGYRGKYCREPCPAGFYGLGCRRR 285


>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
           sapiens]
          Length = 865

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 89  CQCSGNFMGFNCGN-CKFGFWGPNCTE 114
           C+C   + G NC   C   FWGP+C E
Sbjct: 98  CRCRHGYFGANCDTKCPRQFWGPDCKE 124



 Score = 30.0 bits (66), Expect = 5.5
 Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 20/100 (20%)

Query: 23  ACVSSKNLMEKECCPPWSGDRSPCGQLSGRGSCQNILLSNAPLGPQFPFTGVDDRESWPS 82
           AC+       + C    + + SPC Q SGR  C+           +  F    DR  +  
Sbjct: 199 ACLCHAGWWGRSCNNQCACNSSPCEQQSGRCQCR-----------ERTFGARCDR--YCQ 245

Query: 83  VFYNR------TCQCSGNFMGFNCGN-CKFGFWGPNCTER 115
            F  R      TC C   + G  C   C  GF+G  C  R
Sbjct: 246 CFRGRCHPVDGTCACEPGYRGKYCREPCPAGFYGLGCRRR 285


>gi|40807489 egf-like module containing, mucin-like, hormone
           receptor-like sequence 1 [Homo sapiens]
          Length = 886

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 7/101 (6%)

Query: 19  HFPRACVSSKNLMEKECCPPWSGDRSPCGQLSGRGSCQNILLSNAPLG----PQFP--FT 72
           HF    V  K++ E    P   G  S C  LSGR  C  +   ++P G    P  P  F+
Sbjct: 70  HFKDPGVRCKDIDECSQSPQPCGPNSSCKNLSGRYKCSCLDGFSSPTGNDWVPGKPGNFS 129

Query: 73  GVDDRESWPSVFYNRTCQCSGNFMGFNCGNCKFGFWGPNCT 113
             D  E   S        C  +   ++C +C+ GF   N T
Sbjct: 130 CTDINECLTSSVCPEHSDCVNSMGSYSC-SCQVGFISRNST 169


>gi|122937343 platelet endothelial aggregation receptor 1 [Homo
           sapiens]
          Length = 1037

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 89  CQCSGNFMGFNCG-NCKFGFWGPNCT 113
           CQC   +MG  C  +C  G WG NC+
Sbjct: 552 CQCQAGWMGARCHLSCPEGLWGVNCS 577



 Score = 30.0 bits (66), Expect = 5.5
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 86  NRTCQCSGNFMGFNCGN-CKFGFWGPNCTE 114
           N TC C   + G +C   C  G WG NC +
Sbjct: 634 NGTCYCLAGWTGPDCSQPCPPGHWGENCAQ 663



 Score = 29.3 bits (64), Expect = 9.3
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 89  CQCSGNFMGFNCGN-CKFGFWGPNC 112
           CQC   + G +C + C  G WGP C
Sbjct: 120 CQCVPGWRGDDCSSECAPGMWGPQC 144



 Score = 29.3 bits (64), Expect = 9.3
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 88  TCQCSGNFMGFNCG-NCKFGFWGPNCTE 114
           +C C   +MG  C   C  GF GPNC++
Sbjct: 247 SCSCPPGWMGTICSLPCPEGFHGPNCSQ 274


>gi|61743980 stabilin 2 precursor [Homo sapiens]
          Length = 2551

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 20/88 (22%)

Query: 28   KNLMEKECCPPWSGDR-SPCGQLSGRGSCQNILLSNAPLGPQFPFTGVDDRESWPSVFYN 86
            + ++ +ECC  + G +  PC      G+ QN+   N         TGV            
Sbjct: 1329 RTVITRECCAGFFGPQCQPCP-----GNAQNVCFGNGICLDGVNGTGV------------ 1371

Query: 87   RTCQCSGNFMGFNCGNCKFGFWGPNCTE 114
              C+C   F G  C  C  G +G +C +
Sbjct: 1372 --CECGEGFSGTACETCTEGKYGIHCDQ 1397



 Score = 29.6 bits (65), Expect = 7.1
 Identities = 28/109 (25%), Positives = 39/109 (35%), Gaps = 20/109 (18%)

Query: 21   PRACVSSKNLMEKEC--CPPWSGDRSPCGQLSGRGSCQNILLSNAPLGPQFPFTGVDDRE 78
            PR C   K    ++C  CP   G  +PC   + RG C +   +         F G     
Sbjct: 1948 PRCC---KGYFGRDCQACP--GGPDAPC---NNRGVCLDQYSATGECKCNTGFNGTACEM 1999

Query: 79   SWPSVFYNRTC---------QCSGNFMGFNCGNCKFGFWGPNCTERRLL 118
             WP  F    C         QC     G     C+ G+ GP+C  + +L
Sbjct: 2000 CWPGRF-GPDCLPCGCSDHGQCDDGITGSGQCLCETGWTGPSCDTQAVL 2047


>gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens]
          Length = 1541

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 89  CQCSGNFMGFNCGN-CKFGFWGPNCT 113
           C C+  + GF+C   C  G WGP+C+
Sbjct: 845 CSCAPGWTGFSCQRACDTGHWGPDCS 870



 Score = 30.8 bits (68), Expect = 3.2
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 89   CQCSGNFMGFNCG-NCKFGFWGPNCT 113
            C+C   F+G +C   C  G +GPNCT
Sbjct: 1234 CRCPTGFLGTDCNLTCPQGRFGPNCT 1259


>gi|4503173 coxsackie virus and adenovirus receptor precursor [Homo
           sapiens]
          Length = 365

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 7/47 (14%)

Query: 478 LLGAAMVGAVLTALLAGLVSLLCRHKRKQLPEEKQPLLMEKEDYHSL 524
           L+  A++G +L   L GL+   CR KR+   EEK     EKE +H +
Sbjct: 238 LIAGAIIGTLLALALIGLIIFCCRKKRR---EEK----YEKEVHHDI 277


>gi|148612831 kinesin family member 18A [Homo sapiens]
          Length = 898

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 255 QHPTNPNLLSPASFFSSWQIVCSRLEEYNSHQSLCNGTPEGPLRRNPGNHDKSRT 309
           Q+P+   L+ P+SF +S+Q + S +   N  + LC        R+  G  D   T
Sbjct: 715 QNPSTVTLMKPSSFTTSFQAISSNINSDNCLKMLCEVAIPHNRRKECGQEDLDST 769


>gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens]
          Length = 3333

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%)

Query: 89  CQCSGNFMGFNCGNCKFGFWG-PNCTERRLLVRRNIFDLSAPEKD 132
           C C  NF G NC  C  G++  P C      +R  IF +S P  +
Sbjct: 443 CHCKPNFHGDNCEKCAIGYYNFPFC------LRIPIFPVSTPSSE 481


>gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens]
          Length = 3277

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%)

Query: 89  CQCSGNFMGFNCGNCKFGFWG-PNCTERRLLVRRNIFDLSAPEKD 132
           C C  NF G NC  C  G++  P C      +R  IF +S P  +
Sbjct: 443 CHCKPNFHGDNCEKCAIGYYNFPFC------LRIPIFPVSTPSSE 481


>gi|143770880 laminin, beta 4 [Homo sapiens]
          Length = 1761

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 19/92 (20%)

Query: 34  ECCPPWSGDRSPCGQLSGRGSCQNIL---LSNAPLG-PQFPFTGVDDRES---------- 79
           E C P +G    CG  +   +C+  +     N   G P  P    DD  S          
Sbjct: 870 ELCDPETGSCFNCGGFTTGRNCERCIDGYYGNPSSGQPCRPCLCPDDPSSNQYFAHSCYQ 929

Query: 80  --WPSVFYNRTCQCSGNFMGFNCGNCKFGFWG 109
             W S   +  C C   + G  CG C  GF+G
Sbjct: 930 NLWSS---DVICNCLQGYTGTQCGECSTGFYG 958



 Score = 29.3 bits (64), Expect = 9.3
 Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 12/108 (11%)

Query: 8    CLLWSFQTSAGHFPRACVSSKNLMEKE----CCPPWSGDRSPCGQLSGRGSCQNILLSNA 63
            CL     +S  +F  +C   +NL   +    C   ++G +  CG+ S  G   N  +S A
Sbjct: 911  CLCPDDPSSNQYFAHSCY--QNLWSSDVICNCLQGYTGTQ--CGECS-TGFYGNPRISGA 965

Query: 64   PLGPQFPFTGVD--DRESWPSVFYNRTCQCSGNFMGFNCGNCKFGFWG 109
            P  P      +D  D ES   V      +C  N  G NC  CK G +G
Sbjct: 966  PCQPCACNNNIDVTDPESCSRVT-GECLRCLHNTQGANCQLCKPGHYG 1012


>gi|219842266 usherin isoform B [Homo sapiens]
          Length = 5202

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 89  CQCSGNFMGFNCGNCKFGF 107
           C+C  N +G  C +C FGF
Sbjct: 715 CKCKANVIGLRCDHCNFGF 733


>gi|219842259 usherin isoform A [Homo sapiens]
          Length = 1546

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 89  CQCSGNFMGFNCGNCKFGF 107
           C+C  N +G  C +C FGF
Sbjct: 715 CKCKANVIGLRCDHCNFGF 733


>gi|157384973 tenascin R [Homo sapiens]
          Length = 1358

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 31/127 (24%), Positives = 48/127 (37%), Gaps = 31/127 (24%)

Query: 16  SAGHFPRACVSSKNLMEKECC--PPWSGDRSPCGQLSGRGSCQNI-LLSNAPLGPQFPFT 72
           S  + P  C S    ++ +C     +SGD   C +L     C +  L  +     + P+T
Sbjct: 200 SEPYCPLGCSSRGVCVDGQCICDSEYSGD--DCSELRCPTDCSSRGLCVDGECVCEEPYT 257

Query: 73  GVDDRE-------SWPSVFYNRTCQCSGNFMGFNCGN-------------------CKFG 106
           G D RE       S      N TC C   ++G +CG                    C+ G
Sbjct: 258 GEDCRELRCPGDCSGKGRCANGTCLCEEGYVGEDCGQRQCLNACSGRGQCEEGLCVCEEG 317

Query: 107 FWGPNCT 113
           + GP+C+
Sbjct: 318 YQGPDCS 324


>gi|144226234 metastasis suppressor 1 [Homo sapiens]
          Length = 755

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 264 SPASFFSSWQIVCSRLEEYNSHQSLCNGTPEGPLRRNPGNHDKSRTPRLPSSADVEFCLS 323
           SP++  S    VCS L   NS  S  +G+       +P +H + R+  L   A V    S
Sbjct: 262 SPSTTMSRKSSVCSSLNSVNSSDSRSSGSHS----HSPSSHYRYRSSNLAQQAPVRLS-S 316

Query: 324 LTQYESGSMDKAA 336
           ++ ++SG + + A
Sbjct: 317 VSSHDSGFISQDA 329


>gi|145309326 laminin, gamma 1 precursor [Homo sapiens]
          Length = 1609

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)

Query: 89  CQCSGNFMGFNCGNCKFGFW 108
           C C  N  GFNC  CK GF+
Sbjct: 463 CVCKDNVEGFNCERCKPGFF 482


>gi|16933525 unc5C [Homo sapiens]
          Length = 931

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 217 RWEQEIQKLTGDENFTIPYWDWRDAEKCDICTD 249
           +WE  +  + G+ENFT P +   DAE C I T+
Sbjct: 632 QWEDVV--VVGEENFTTPCYIKLDAEACHILTE 662


>gi|40217794 hypothetical protein LOC151050 [Homo sapiens]
          Length = 987

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 440 ISSKDLGYDYSYLQDSDPDSFQDYI--KSYLEQASRIWSWLLGAAMVGAVLTALLAGLVS 497
           +S  + G D      S  D   +Y   K+     S  W WL+  A VG+  T L A +  
Sbjct: 332 LSHVEEGLDSDATDSSSDDDLDEYTLRKNVAVNCSTEWKWLVDRARVGSRWTWLQAQISD 391

Query: 498 LLCR 501
           L C+
Sbjct: 392 LECK 395


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.137    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,822,459
Number of Sequences: 37866
Number of extensions: 1099703
Number of successful extensions: 2730
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2606
Number of HSP's gapped (non-prelim): 136
length of query: 529
length of database: 18,247,518
effective HSP length: 107
effective length of query: 422
effective length of database: 14,195,856
effective search space: 5990651232
effective search space used: 5990651232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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