Guide to the Human Genome
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Name: STAB2 Sequence: fasta or formatted (2551aa) NCBI GI: 61743980
Description:

stabilin 2 precursor

Referenced in:

Epidermal Growth Factor
Extracellular Matrix

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7        145           2
 C cysteine            7.9        202           2
 D aspartate           5.3        135           2
 E glutamate           4.9        126           2
 F phenylalanine       3.4         87           2
 G glycine             9.8        251           2
 H histidine           2.4         62           2
 I isoleucine          4.9        124           2
 K lysine              4.7        120           3
 L leucine             8.3        213           3
 M methionine          1.3         33           2
 N asparagine          6.2        157           3
 P proline             5.0        128           2
 Q glutamine           4.0        102           2
 R arginine            4.2        106           2
 S serine              6.2        159           3
 T threonine           7.1        181           2
 V valine              4.8        123           2
 W tryptophan          0.7         18           1
 Y tyrosine            3.1         79           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   stabilin 2 precursor 
STAB1                 0.376   stabilin 1 precursor 
FBN1                  0.019   fibrillin 1 precursor 
CUBN                  0.018   cubilin 
FBN2                  0.018   fibrillin 2 precursor 
MEGF10                0.016   multiple EGF-like-domains 10 
MEGF6                 0.016   EGF-like-domain, multiple 3 
MEGF11                0.015   multiple EGF-like-domains 11 
NOTCH3                0.015   Notch homolog 3 
TNFAIP6               0.015   tumor necrosis factor, alpha-induced protein 6 precu...
TNC                   0.015   tenascin C precursor 
FBN3                  0.015   fibrillin 3 precursor 
NOTCH2                0.015   notch 2 preproprotein 
PEAR1                 0.015   platelet endothelial aggregation receptor 1 
JAG1                  0.014   jagged 1 precursor 
TNXB                  0.014   tenascin XB isoform 1 precursor 
NOTCH1                0.014   notch1 preproprotein 
NOTCH4                0.014   notch4 preproprotein 
ODZ3                  0.014   odz, odd Oz/ten-m homolog 3 
SLIT1                 0.014   slit homolog 1 
NID2                  0.013   nidogen 2 precursor 
ODZ2                  0.013   odz, odd Oz/ten-m homolog 2 
NID1                  0.013   nidogen 1 precursor 
CRELD2                0.013   cysteine-rich with EGF-like domains 2 isoform b [Ho...
LRP1                  0.013   low density lipoprotein-related protein 1 
SCUBE1                0.013   signal peptide, CUB domain, EGF-like 1 
LTBP1                 0.013   latent transforming growth factor beta binding prote...
LTBP1                 0.013   latent transforming growth factor beta binding prote...
JAG2                  0.013   jagged 2 isoform b precursor 
JAG2                  0.013   jagged 2 isoform a precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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