Guide to the Human Genome
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Name: UNC5C Sequence: fasta or formatted (931aa) NCBI GI: 16933525
Description:

unc5C

Referenced in:

Netrins and Laminins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         70           3
 C cysteine            3.5         33           2
 D aspartate           5.2         48           3
 E glutamate           6.1         57           2
 F phenylalanine       2.7         25           2
 G glycine             5.8         54           2
 H histidine           2.6         24           2
 I isoleucine          4.9         46           2
 K lysine              4.8         45           1
 L leucine            10.7        100           2
 M methionine          1.4         13           1
 N asparagine          4.0         37           1
 P proline             6.1         57           2
 Q glutamine           4.3         40           2
 R arginine            4.5         42           3
 S serine              7.0         65           2
 T threonine           7.0         65           2
 V valine              7.1         66           4
 W tryptophan          1.8         17           1
 Y tyrosine            2.9         27           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   unc5C 
UNC5B                 0.628   unc-5 homolog B 
UNC5D                 0.480   unc-5 homolog D 
UNC5A                 0.456   netrin receptor Unc5h1 
HMCN1                 0.054   hemicentin 1 
THBS2                 0.045   thrombospondin 2 precursor 
SEMA5A                0.044   semaphorin 5A 
UNC5CL                0.042   unc-5 homolog C-like 
BAI3                  0.041   brain-specific angiogenesis inhibitor 3 
SEMA5B                0.041   semaphorin 5B isoform 1 
THBS1                 0.040   thrombospondin 1 precursor 
BAI1                  0.040   brain-specific angiogenesis inhibitor 1 precursor [...
CFP                   0.037   complement factor properdin precursor 
CFP                   0.037   complement factor properdin precursor 
BAI2                  0.036   brain-specific angiogenesis inhibitor 2 
SSPO                  0.035   SCO-spondin 
ROBO2                 0.031   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.030   roundabout, axon guidance receptor, homolog 2 isofor...
ROBO1                 0.029   roundabout 1 isoform a 
TJP1                  0.029   tight junction protein 1 isoform b 
TJP1                  0.029   tight junction protein 1 isoform a 
ROBO1                 0.028   roundabout 1 isoform d 
ROBO1                 0.028   roundabout 1 isoform c 
ROBO1                 0.028   roundabout 1 isoform b 
LOC642132             0.028   PREDICTED: similar to roundabout 1 isoform 1 
LOC642132             0.028   PREDICTED: similar to roundabout 1 isoform 2 
ROBO3                 0.028   roundabout, axon guidance receptor, homolog 3 
ADAMTS16              0.021   ADAM metallopeptidase with thrombospondin type 1 mo...
ADAMTS17              0.020   ADAM metallopeptidase with thrombospondin type 1 mo...
C8A                   0.020   complement component 8, alpha polypeptide precursor [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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