Guide to the Human Genome
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Name: LAMA3 Sequence: fasta or formatted (3333aa) NCBI GI: 38045910
Description:

laminin alpha 3 subunit isoform 1

Referenced in:

Netrins and Laminins

Other entries for this name:
alt prot [3277aa] laminin alpha 3 subunit isoform 3
alt prot [1668aa] laminin alpha 3 subunit isoform 4
alt prot [1724aa] laminin alpha 3 subunit isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4        213           4
 C cysteine            4.9        162           2
 D aspartate           5.0        166           3
 E glutamate           5.7        191           2
 F phenylalanine       3.5        115           2
 G glycine             8.2        274           3
 H histidine           2.9         95           2
 I isoleucine          4.0        132           2
 K lysine              4.6        153           2
 L leucine             8.9        298           4
 M methionine          1.3         44           2
 N asparagine          5.0        167           3
 P proline             5.9        195           2
 Q glutamine           4.7        158           2
 R arginine            5.9        198           3
 S serine              7.7        258           3
 T threonine           5.4        179           2
 V valine              6.4        212           4
 W tryptophan          0.8         25           2
 Y tyrosine            2.9         98           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   laminin alpha 3 subunit isoform 1 
LAMA3                 0.974   laminin alpha 3 subunit isoform 3 
LAMA3                 0.483   laminin alpha 3 subunit isoform 2 
LAMA3                 0.456   laminin alpha 3 subunit isoform 4 
LAMA5                 0.254   laminin alpha 5 
LAMA4                 0.117   laminin, alpha 4 isoform 2 precursor 
LAMA4                 0.117   laminin, alpha 4 isoform 2 precursor 
LAMA4                 0.117   laminin, alpha 4 isoform 1 precursor 
LAMA2                 0.090   laminin alpha 2 subunit isoform b precursor 
LAMA2                 0.090   laminin alpha 2 subunit isoform a precursor 
LAMA1                 0.088   laminin, alpha 1 precursor 
USH2A                 0.044   usherin isoform B 
USH2A                 0.044   usherin isoform A 
HSPG2                 0.042   heparan sulfate proteoglycan 2 
LAMC3                 0.039   laminin, gamma 3 precursor 
LAMC1                 0.038   laminin, gamma 1 precursor 
LAMB4                 0.036   laminin, beta 4 
LAMB3                 0.035   laminin, beta 3 precursor 
LAMB3                 0.035   laminin, beta 3 precursor 
LAMB3                 0.035   laminin, beta 3 precursor 
LAMB1                 0.035   laminin, beta 1 precursor 
NTN1                  0.034   netrin 1 
LAMB2                 0.033   laminin, beta 2 precursor 
LAMC2                 0.032   laminin, gamma 2 isoform a precursor 
NTN4                  0.031   netrin 4 
LAMC2                 0.030   laminin, gamma 2 isoform b precursor 
NTN3                  0.025   netrin 3 
NTNG1                 0.022   netrin G1 isoform 1 
NTNG2                 0.021   netrin G2 
MEGF6                 0.015   EGF-like-domain, multiple 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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