Guide to the Human Genome
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Name: LAMA4 Sequence: fasta or formatted (1823aa) NCBI GI: 157419124
Description:

laminin, alpha 4 isoform 1 precursor

Referenced in:

Netrins and Laminins

Other entries for this name:
alt prot [1816aa] laminin, alpha 4 isoform 2 precursor
alt prot [1816aa] laminin, alpha 4 isoform 2 precursor
alt prot [120aa] laminin, alpha 4 isoform 3 precursor
alt prot [120aa] laminin, alpha 4 isoform 3 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0        128           3
 C cysteine            2.5         46           1
 D aspartate           5.8        106           2
 E glutamate           6.8        124           2
 F phenylalanine       4.2         76           2
 G glycine             6.6        121           3
 H histidine           2.4         44           1
 I isoleucine          4.9         89           2
 K lysine              5.7        103           2
 L leucine             8.7        158           2
 M methionine          1.8         32           2
 N asparagine          5.7        103           2
 P proline             4.3         79           2
 Q glutamine           4.3         79           2
 R arginine            5.3         97           2
 S serine              9.0        164           3
 T threonine           4.7         85           2
 V valine              6.6        120           2
 W tryptophan          0.6         11           1
 Y tyrosine            3.2         58           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   laminin, alpha 4 isoform 1 precursor 
LAMA4                 0.994   laminin, alpha 4 isoform 2 precursor 
LAMA4                 0.994   laminin, alpha 4 isoform 2 precursor 
LAMA3                 0.220   laminin alpha 3 subunit isoform 1 
LAMA3                 0.213   laminin alpha 3 subunit isoform 3 
LAMA3                 0.212   laminin alpha 3 subunit isoform 4 
LAMA3                 0.201   laminin alpha 3 subunit isoform 2 
LAMA5                 0.182   laminin alpha 5 
LAMA2                 0.108   laminin alpha 2 subunit isoform a precursor 
LAMA2                 0.108   laminin alpha 2 subunit isoform b precursor 
LAMA1                 0.100   laminin, alpha 1 precursor 
LAMB1                 0.040   laminin, beta 1 precursor 
LAMB4                 0.039   laminin, beta 4 
LAMB2                 0.037   laminin, beta 2 precursor 
LAMC1                 0.036   laminin, gamma 1 precursor 
LAMC3                 0.033   laminin, gamma 3 precursor 
LAMA4                 0.030   laminin, alpha 4 isoform 3 precursor 
LAMA4                 0.030   laminin, alpha 4 isoform 3 precursor 
LAMC2                 0.030   laminin, gamma 2 isoform a precursor 
LAMC2                 0.029   laminin, gamma 2 isoform b precursor 
MEGF9                 0.029   multiple EGF-like-domains 9 
HSPG2                 0.028   heparan sulfate proteoglycan 2 
USH2A                 0.022   usherin isoform B 
LAMB3                 0.021   laminin, beta 3 precursor 
LAMB3                 0.021   laminin, beta 3 precursor 
LAMB3                 0.021   laminin, beta 3 precursor 
NTN4                  0.021   netrin 4 
USH2A                 0.018   usherin isoform A 
NRXN1                 0.017   neurexin 1 isoform alpha2 precursor 
NRXN1                 0.017   neurexin 1 isoform alpha1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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