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Search of human proteins with 4503489
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4503489 ephrin-B3 precursor [Homo sapiens]
(340 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4503489 ephrin-B3 precursor [Homo sapiens] 717 0.0
gi|4758250 ephrin B2 [Homo sapiens] 242 3e-64
gi|4758248 ephrin-B1 precursor [Homo sapiens] 238 6e-63
gi|27894381 ephrin-A2 precursor [Homo sapiens] 69 5e-12
gi|33359686 ephrin A4 isoform b [Homo sapiens] 68 1e-11
gi|4826708 ephrin A3 [Homo sapiens] 64 1e-10
gi|33359680 ephrin A1 isoform b precursor [Homo sapiens] 64 2e-10
gi|33359682 ephrin A1 isoform a precursor [Homo sapiens] 63 3e-10
gi|4503487 ephrin-A5 [Homo sapiens] 61 2e-09
gi|100913200 ephrin A4 isoform c [Homo sapiens] 59 5e-09
gi|4885197 ephrin A4 isoform a [Homo sapiens] 59 6e-09
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 52 8e-07
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 52 8e-07
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 52 8e-07
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 52 8e-07
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 50 3e-06
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 50 4e-06
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 48 1e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 48 1e-05
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 47 2e-05
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 47 2e-05
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 47 2e-05
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 45 7e-05
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 45 7e-05
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 45 7e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 45 9e-05
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 45 9e-05
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 45 9e-05
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 45 9e-05
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 45 9e-05
>gi|4503489 ephrin-B3 precursor [Homo sapiens]
Length = 340
Score = 717 bits (1850), Expect = 0.0
Identities = 340/340 (100%), Positives = 340/340 (100%)
Query: 1 MGPPHSGPGGVRVGALLLLGVLGLVSGLSLEPVYWNSANKRFQAEGGYVLYPQIGDRLDL 60
MGPPHSGPGGVRVGALLLLGVLGLVSGLSLEPVYWNSANKRFQAEGGYVLYPQIGDRLDL
Sbjct: 1 MGPPHSGPGGVRVGALLLLGVLGLVSGLSLEPVYWNSANKRFQAEGGYVLYPQIGDRLDL 60
Query: 61 LCPRARPPGPHSSPNYEFYKLYLVGGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEY 120
LCPRARPPGPHSSPNYEFYKLYLVGGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEY
Sbjct: 61 LCPRARPPGPHSSPNYEFYKLYLVGGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEY 120
Query: 121 SPNLWGHEFRSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVGQSPRGGAVPRKP 180
SPNLWGHEFRSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVGQSPRGGAVPRKP
Sbjct: 121 SPNLWGHEFRSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVGQSPRGGAVPRKP 180
Query: 181 VSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLL 240
VSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLL
Sbjct: 181 VSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLL 240
Query: 241 GVAGAGGAMCWRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGG 300
GVAGAGGAMCWRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGG
Sbjct: 241 GVAGAGGAMCWRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGG 300
Query: 301 GAADPPFCPHYEKVSGDYGHPVYIVQDGPPQSPPNIYYKV 340
GAADPPFCPHYEKVSGDYGHPVYIVQDGPPQSPPNIYYKV
Sbjct: 301 GAADPPFCPHYEKVSGDYGHPVYIVQDGPPQSPPNIYYKV 340
>gi|4758250 ephrin B2 [Homo sapiens]
Length = 333
Score = 242 bits (618), Expect = 3e-64
Identities = 135/330 (40%), Positives = 187/330 (56%), Gaps = 13/330 (3%)
Query: 14 GALLLLGVLGLVSGLSLEPVYWNSANKRFQAEGGYVLYPQIGDRLDLLCPRARPPGPHSS 73
G L++L + + LEP+YWNS+N +F G VLYPQIGD+LD++CP+ +
Sbjct: 14 GVLMVLCRTAISKSIVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKV---DSKTV 70
Query: 74 PNYEFYKLYLVGGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEFRSHH 133
YE+YK+Y+V Q RC LL C +PD D++FTIKFQE+SPNLWG EF+ +
Sbjct: 71 GQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNK 130
Query: 134 DYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVGQ--SPRGGAVPRKPVSEMPMER-DR 190
DYYII+TS+G+ EGL++ +GGVC TR MK+L++VGQ S G + P +E
Sbjct: 131 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASSAGSTRNKDPTRRPELEAGTN 190
Query: 191 GAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMC 250
G + + P + PG T ++ + + + AG A G + ++ + +
Sbjct: 191 GRSSTTSPFVKPNPGSSTDGNSAGHSGNNILGSEVALFAGIASGCIIFIVIIITLVVLLL 250
Query: 251 WRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPH 310
RRR + +H S + G +EP ++ I LR AD FCPH
Sbjct: 251 KYRRRHRKHSPQHTTTLSLSTLATPKRSGNN----NGSEPSDIIIPLR---TADSVFCPH 303
Query: 311 YEKVSGDYGHPVYIVQDGPPQSPPNIYYKV 340
YEKVSGDYGHPVYIVQ+ PPQSP NIYYKV
Sbjct: 304 YEKVSGDYGHPVYIVQEMPPQSPANIYYKV 333
>gi|4758248 ephrin-B1 precursor [Homo sapiens]
Length = 346
Score = 238 bits (607), Expect = 6e-63
Identities = 136/329 (41%), Positives = 180/329 (54%), Gaps = 30/329 (9%)
Query: 29 SLEPVYWNSANKRFQAEGGYVLYPQIGDRLDLLCPRARPPGPHSSPNYEFYKLYLVGGAQ 88
+LEPV W+S N +F + G V+YP+IGD+LD++CPRA P YE+YKLYLV Q
Sbjct: 31 NLEPVSWSSLNPKFLSGKGLVIYPKIGDKLDIICPRAEAGRP-----YEYYKLYLVRPEQ 85
Query: 89 GRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEFRSHHDYYIIATSDGTREGL 148
C PN+L+TC+RP+ ++RFTIKFQE+SPN G EF+ HHDYYI +TS+G+ EGL
Sbjct: 86 AAACSTVLDPNVLVTCNRPEQEIRFTIKFQEFSPNYMGLEFKKHHDYYITSTSNGSLEGL 145
Query: 149 ESLQGGVCLTRGMKVLLRVGQSPRGGAVPRKPVSEMPMERDRGAAHSLE-PGKENLPGDP 207
E+ +GGVC TR MK++++VGQ P + S E D + + PG GD
Sbjct: 146 ENREGGVCRTRTMKIIMKVGQDPNAVTPEQLTTSRPSKEADNTVKMATQAPGSRGSLGDS 205
Query: 208 TSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMC----------------W 251
+ E P + +G G + + A GA C
Sbjct: 206 DGKHETVNQEEKSGPGASGGSSGDPDGFFNSKVALFAAVGAGCVIFLLIIIFLTVLLLKL 265
Query: 252 RRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHY 311
R+R K ++ R + S GG G EP ++ I LR + +CPHY
Sbjct: 266 RKRHRKHTQQR-----AAALSLSTLASPKGGSGTAGTEPSDIIIPLR---TTENNYCPHY 317
Query: 312 EKVSGDYGHPVYIVQDGPPQSPPNIYYKV 340
EKVSGDYGHPVYIVQ+ PPQSP NIYYKV
Sbjct: 318 EKVSGDYGHPVYIVQEMPPQSPANIYYKV 346
>gi|27894381 ephrin-A2 precursor [Homo sapiens]
Length = 213
Score = 69.3 bits (168), Expect = 5e-12
Identities = 43/117 (36%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 33 VYWNSANKRFQAE-----GGYVLYPQIGDRLDLLCPRARPPGPHSSPNYEFYKLYLVGGA 87
VYWN +N RF A GGY + I D LD+ CP P P + E Y LY+V G
Sbjct: 39 VYWNRSNPRFHAGAGDDGGGYTVEVSINDYLDIYCPHYGAPLPPAE-RMEHYVLYMVNGE 97
Query: 88 QGRRCEAPPAPNLLLTCDRPDLD---LRFTIKFQEYSPNLWGHEFRSHHDYYIIATS 141
C+ C+RP L+F+ KFQ ++P G EFR H+YY I+ +
Sbjct: 98 GHASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGFEFRPGHEYYYISAT 154
>gi|33359686 ephrin A4 isoform b [Homo sapiens]
Length = 207
Score = 68.2 bits (165), Expect = 1e-11
Identities = 52/163 (31%), Positives = 72/163 (44%), Gaps = 9/163 (5%)
Query: 33 VYWNSANKRFQAEGGYVLYPQIGDRLDLLCPRARPPGPHSSPNYEFYKLYLVGGAQGRRC 92
VYWNS+N R G V+ + D LD++CP PGP P E + LY+V C
Sbjct: 30 VYWNSSNPRL-LRGDAVVELGLNDYLDIVCPHYEGPGPPEGP--ETFALYMVDWPGYESC 86
Query: 93 EAP-PAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEFRSHHDYYIIA--TSDGTREGLE 149
+A P C P ++F+ K Q ++P G EF YY I+ T + + + L
Sbjct: 87 QAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQCLR 146
Query: 150 SLQGGVCLTRGMKVLLRVGQSPRGGAVPRKPVSEMPMERDRGA 192
C R +VL R SP GG +P +R GA
Sbjct: 147 LQVSVCCKERRARVLPR---SPGGGGIPAACTGGANSDRQDGA 186
>gi|4826708 ephrin A3 [Homo sapiens]
Length = 238
Score = 64.3 bits (155), Expect = 1e-10
Identities = 41/117 (35%), Positives = 56/117 (47%), Gaps = 11/117 (9%)
Query: 33 VYWNSANKRFQAEGGYVLYPQIGDRLDLLCPRARPPG------PHSSPNYEFYKLYLVGG 86
VYWNS+N+ + EG Y + + D LD+ CP G P E Y LY+V
Sbjct: 35 VYWNSSNQHLRREG-YTVQVNVNDYLDIYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSR 93
Query: 87 AQGRRCEAPPAPNLLLTCDRPDLD---LRFTIKFQEYSPNLWGHEFRSHHDYYIIAT 140
R C A C+RP ++F+ KFQ YS G+EF + H+YY I+T
Sbjct: 94 NGYRTCNASQGFKRW-ECNRPHAPHSPIKFSEKFQRYSAFSLGYEFHAGHEYYYIST 149
>gi|33359680 ephrin A1 isoform b precursor [Homo sapiens]
Length = 183
Score = 63.9 bits (154), Expect = 2e-10
Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 9/129 (6%)
Query: 18 LLGVLGLVSGLSLEPVYWNSANKRFQAEGGYVLYPQIGDRLDLLCPRARPPGPHSSPN-- 75
LLG+ ++ V+WNS+N +F+ E Y ++ Q+ D +D++CP HS +
Sbjct: 8 LLGLCCSLAAADRHTVFWNSSNPKFRNED-YTIHVQLNDYVDIICPHYED---HSVADAA 63
Query: 76 YEFYKLYLVGGAQGRRCEAPPAPNLLLTCDRPDLDL---RFTIKFQEYSPNLWGHEFRSH 132
E Y LYLV + + C+ + C+RP + + KFQ ++P G EF+
Sbjct: 64 MEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKEG 123
Query: 133 HDYYIIATS 141
H YY I+ S
Sbjct: 124 HSYYYISHS 132
>gi|33359682 ephrin A1 isoform a precursor [Homo sapiens]
Length = 205
Score = 63.2 bits (152), Expect = 3e-10
Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 18 LLGVLGLVSGLSLEPVYWNSANKRFQAEGGYVLYPQIGDRLDLLCPRARPPGPHSSPN-- 75
LLG+ ++ V+WNS+N +F+ E Y ++ Q+ D +D++CP HS +
Sbjct: 8 LLGLCCSLAAADRHTVFWNSSNPKFRNED-YTIHVQLNDYVDIICPHYED---HSVADAA 63
Query: 76 YEFYKLYLVGGAQGRRCEAPPAPNLLLTCDRPDLDL---RFTIKFQEYSPNLWGHEFRSH 132
E Y LYLV + + C+ + C+RP + + KFQ ++P G EF+
Sbjct: 64 MEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKEG 123
Query: 133 HDYYIIA 139
H YY I+
Sbjct: 124 HSYYYIS 130
>gi|4503487 ephrin-A5 [Homo sapiens]
Length = 228
Score = 60.8 bits (146), Expect = 2e-09
Identities = 55/202 (27%), Positives = 85/202 (42%), Gaps = 24/202 (11%)
Query: 33 VYWNSANKRFQAEGGYVLYPQIGDRLDLLCPRARPPGPHSSPNYEFYKLYLVGGAQGRRC 92
VYWNS+N RFQ G Y + I D LD+ CP P E Y LY+V C
Sbjct: 34 VYWNSSNPRFQ-RGDYHIDVCINDYLDVFCPHYEDSVPEDKT--ERYVLYMVNFDGYSAC 90
Query: 93 EAPPAPNLLLTCDRPDLD---LRFTIKFQEYSPNLWGHEFRSHHDYYIIATS---DGTRE 146
+ C+RP L+F+ KFQ ++P G EFR +Y+ I+++ +G R
Sbjct: 91 DHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFEFRPGREYFYISSAIPDNGRRS 150
Query: 147 GLESLQGGVCLTRGMKVLLRVGQSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGD 206
L+ +KV +R P + V + + + +SLEP + +
Sbjct: 151 CLK-----------LKVFVR----PTNSCMKTIGVHDRVFDVNDKVENSLEPADDTVHES 195
Query: 207 PTSNATSRGAEGPLPPPSMPAV 228
+ A+ P P + A+
Sbjct: 196 AEPSRGENAAQTPRIPSRLLAI 217
>gi|100913200 ephrin A4 isoform c [Homo sapiens]
Length = 193
Score = 59.3 bits (142), Expect = 5e-09
Identities = 49/159 (30%), Positives = 70/159 (44%), Gaps = 15/159 (9%)
Query: 33 VYWNSANKRFQAEGGYVLYPQIGDRLDLLCPRARPPGPHSSPNYEFYKLYLVGGAQGRRC 92
VYWNS+N R G V+ + D LD++CP PGP P E + LY+V C
Sbjct: 30 VYWNSSNPRL-LRGDAVVELGLNDYLDIVCPHYEGPGPPEGP--ETFALYMVDWPGYESC 86
Query: 93 EAP-PAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEFRSHHDYYIIATSDGTREGLESL 151
+A P C P ++F+ K Q ++P G EF YY I+ T E
Sbjct: 87 QAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSLGFEFLPGETYYYISVP--TPE----- 139
Query: 152 QGGVCLTRGMKVLLRVGQSPRGGAVPRKPVSEM-PMERD 189
G CL + V + P + P++P S P+E +
Sbjct: 140 SSGQCLRLQVSVCCKERNLP---SHPKEPESSQDPLEEE 175
>gi|4885197 ephrin A4 isoform a [Homo sapiens]
Length = 201
Score = 58.9 bits (141), Expect = 6e-09
Identities = 42/126 (33%), Positives = 56/126 (44%), Gaps = 5/126 (3%)
Query: 33 VYWNSANKRFQAEGGYVLYPQIGDRLDLLCPRARPPGPHSSPNYEFYKLYLVGGAQGRRC 92
VYWNS+N R G V+ + D LD++CP PGP P E + LY+V C
Sbjct: 30 VYWNSSNPRL-LRGDAVVELGLNDYLDIVCPHYEGPGPPEGP--ETFALYMVDWPGYESC 86
Query: 93 EAP-PAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEFRSHHDYYIIATSDGTREG-LES 150
+A P C P ++F+ K Q ++P G EF YY I+ G
Sbjct: 87 QAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQCLR 146
Query: 151 LQGGVC 156
LQ VC
Sbjct: 147 LQVSVC 152
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 52.0 bits (123), Expect = 8e-07
Identities = 48/135 (35%), Positives = 55/135 (40%), Gaps = 24/135 (17%)
Query: 197 EPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRA 256
E G E PG P RGA GP P P V G+ G L G G G + R
Sbjct: 352 EKGDEGTPGPPGP----RGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERG 407
Query: 257 KPSESRHPGPGSFGRGGSLGL-GGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVS 315
+P + PGS G GS GL G G GP PG+ I R G PP
Sbjct: 408 RPGKDAMGTPGSPGCAGSPGLPGSPGPPGP----PGD--IVFRKG----PP--------- 448
Query: 316 GDYGHPVYIVQDGPP 330
GD+G P Y+ G P
Sbjct: 449 GDHGLPGYLGSPGIP 463
Score = 46.6 bits (109), Expect = 3e-05
Identities = 47/157 (29%), Positives = 58/157 (36%), Gaps = 13/157 (8%)
Query: 185 PMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAG 244
P ER H E G LPG P + + G +GP P P G G + G G
Sbjct: 758 PGERGNSGEHG-EIGLPGLPGLPGTPG-NEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRG 815
Query: 245 A------GGAMCWRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALR 298
A G + RR K PG R G G G G+ + E G LG +
Sbjct: 816 AQGLPGLNGLKGQQGRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLG---Q 872
Query: 299 GGGAADPPFC--PHYEKVSGDYGHPVYIVQDGPPQSP 333
G +P P + V G G P I GPP +P
Sbjct: 873 RGYPGNPGILGPPGEDGVIGMMGFPGAIGPPGPPGNP 909
Score = 42.7 bits (99), Expect = 5e-04
Identities = 48/170 (28%), Positives = 64/170 (37%), Gaps = 41/170 (24%)
Query: 173 GGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAA 232
G A PR P G ++ PG+ G P S S GA GP PP
Sbjct: 1210 GDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRG-SPGAPGPPGPPGSH------ 1262
Query: 233 GGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGP-GSFGRGGSLGLGGGGGMGPREAEPG 291
++G+ G G+M HPGP G G G +G G R PG
Sbjct: 1263 ------VIGIKGDKGSM------------GHPGPKGPPGTAGDMGPPG------RLGAPG 1298
Query: 292 ELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGP-----PQSPPNI 336
G+ G DP F + V G+ G+P ++ GP P+ PP +
Sbjct: 1299 TPGLP---GPRGDPGF-QGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGV 1344
Score = 41.6 bits (96), Expect = 0.001
Identities = 56/185 (30%), Positives = 68/185 (36%), Gaps = 28/185 (15%)
Query: 168 GQSPRGG--AVPRKP-VSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPS 224
GQ R G +P P V +P + A S E G + PGDP S S G GP PP
Sbjct: 560 GQPGRKGLDGIPGTPGVKGLPGPKGE-LALSGEKGDQGPPGDPGSPG-SPGPAGPAGPPG 617
Query: 225 M-----PAVAGAAGGLALLLLGVAGAGGAMCWRRRRA----------KPSESRHPGP-GS 268
P + G G + G G G R + P HPGP G
Sbjct: 618 YGPQGEPGLQGTQG-----VPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGP 672
Query: 269 FGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDG 328
G GSLG G G+ + EPG GI G P + G G P + + G
Sbjct: 673 PGIPGSLGKCGDPGLPGPDGEPGIPGIGF--PGPPGPKGDQGFPGTKGSLGCPGKMGEPG 730
Query: 329 PPQSP 333
P P
Sbjct: 731 LPGKP 735
Score = 40.0 bits (92), Expect = 0.003
Identities = 45/138 (32%), Positives = 55/138 (39%), Gaps = 30/138 (21%)
Query: 197 EPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRA 256
EPG + G+P G +G P MP + G G L G AG G R
Sbjct: 956 EPGLKGFAGNP-------GEKGNRGVPGMPGLKGLKG-----LPGPAGPPGP------RG 997
Query: 257 KPSESRHPG-PGSFGRGGSLG-LGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKV 314
+ +PG PG G GS+G +G G G R G LG G A P P +
Sbjct: 998 DLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKR----GTLGFP----GRAGRPGLPGIHGL 1049
Query: 315 SGDYGHPVYI--VQDGPP 330
GD G P Y + GPP
Sbjct: 1050 QGDKGEPGYSEGTRPGPP 1067
Score = 39.3 bits (90), Expect = 0.005
Identities = 50/192 (26%), Positives = 68/192 (35%), Gaps = 46/192 (23%)
Query: 168 GQSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPA 227
G + GA ++ E+ + D G + PG + LPG P G GP+ PP P
Sbjct: 151 GLKGQKGAPAKEEDIELDAKGDPGLPGA--PGPQGLPGPP-------GFPGPVGPPGPPG 201
Query: 228 VAGAAGGLALLLLGVAGAGGAMCWR-----RRRAKPSESRHPGP---------------- 266
G G +G G G M R R + PGP
Sbjct: 202 FFGFPGA-----MGPRGPKGHMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTD 256
Query: 267 --------GSFGRGGSLGLGG--GGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSG 316
G+ G G G G G G + PG+ G+ + G P F P E V G
Sbjct: 257 LKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPGF-PGSEGVKG 315
Query: 317 DYGHPVYIVQDG 328
+ G P + +DG
Sbjct: 316 NRGFPGLMGEDG 327
Score = 38.1 bits (87), Expect = 0.011
Identities = 66/237 (27%), Positives = 81/237 (34%), Gaps = 60/237 (25%)
Query: 141 SDGTREGLESLQGGVCLTRGMKVLLRVGQ-SPRGGAVPRKPVSEMPMERDRGAAHSLEPG 199
S+GTR G G L M +GQ P G P P GA S PG
Sbjct: 1059 SEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGP---------EGAPGS--PG 1107
Query: 200 KENLPGDPTSNATS-----RGAEGP---LPPPSMPAVAGAAGGLALL-------LLGVAG 244
LPG P + +G GP PP +P G+ G + + + G AG
Sbjct: 1108 SPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAG 1167
Query: 245 AGGAMCWRRRRAKPSESRHPG-------------PGSFGRGGSLGLGGGGGMGPREAEPG 291
G RA P +PG PG GR G++G G G E PG
Sbjct: 1168 EKGET--GLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPG 1225
Query: 292 ELGI---------------ALRGG-GAADPPFCP--HYEKVSGDYGHPVYIVQDGPP 330
G+ RG GA PP P H + GD G + GPP
Sbjct: 1226 PPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPP 1282
Score = 37.7 bits (86), Expect = 0.015
Identities = 44/149 (29%), Positives = 60/149 (40%), Gaps = 13/149 (8%)
Query: 195 SLEP-GKENLPGDP--TSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCW 251
+L+P G+ +PGDP +G +G P + + G G LAL G G G
Sbjct: 543 TLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALS--GEKGDQGPPGD 600
Query: 252 RRRRAKPSESRHPGP------GSFGRGGSLGLGGGGGMGPREAEP-GELGIALRGGGAAD 304
P + GP G G G+ G+ G G P EA P GEL ++ G
Sbjct: 601 PGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPG-PPGEAGPRGELSVSTPVPGPPG 659
Query: 305 PPFCPHYEKVSGDYGHPVYIVQDGPPQSP 333
PP P + G G P + + G P P
Sbjct: 660 PPGPPGHPGPQGPPGIPGSLGKCGDPGLP 688
Score = 36.6 bits (83), Expect = 0.033
Identities = 42/159 (26%), Positives = 51/159 (32%), Gaps = 30/159 (18%)
Query: 197 EPGKENLPGDPTSNATS-----RGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCW 251
E G++ PG P S G GP P P + G G GV G G +
Sbjct: 47 EKGEKGFPGPPGSPGQKGFTGPEGLPGPQGPKGFPGLPGLTGSK-----GVRGISGLPGF 101
Query: 252 RRRRAKPSESRHPGP----------GSFGRGGSLGL----------GGGGGMGPREAEPG 291
P + GP GS G G GL G G G + A
Sbjct: 102 SGSPGLPGTPGNTGPYGLVGVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQKGAPAK 161
Query: 292 ELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGPP 330
E I L G P P + + G G P + GPP
Sbjct: 162 EEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPP 200
Score = 35.8 bits (81), Expect = 0.056
Identities = 45/148 (30%), Positives = 54/148 (36%), Gaps = 21/148 (14%)
Query: 197 EPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRA 256
EPG +PG N G++G P AG G L G+ G G +
Sbjct: 1007 EPGLRGIPGS-MGNMGMPGSKGKRGTLGFPGRAGRPG-----LPGIHGLQGD------KG 1054
Query: 257 KPSESRHPGPGSFGRGGSLGLGGG----GGMGPREAEPGELGIALRGGGAADP--PFCPH 310
+P S PG G G GL G G MG + PG LG A G P P P
Sbjct: 1055 EPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMG-QPGPPGHLGPAGPEGAPGSPGSPGLPG 1113
Query: 311 YEKVSGDYGHPVYIVQDGPP--QSPPNI 336
GD G GPP + PP +
Sbjct: 1114 KPGPHGDLGFKGIKGLLGPPGIRGPPGL 1141
Score = 35.4 bits (80), Expect = 0.074
Identities = 32/106 (30%), Positives = 42/106 (39%), Gaps = 14/106 (13%)
Query: 197 EPGKENLPGDPTSNAT-----SRGAEGPLPPPSMPAVAGAAGGLALLLL-GVAGAGGAMC 250
+PG + PG S G GP+ P P V G G L ++ L G G G
Sbjct: 1308 DPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPGT-- 1365
Query: 251 WRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIA 296
+P PGP G G+LG G G ++ +PG G A
Sbjct: 1366 ----PGEPGMQGEPGPP--GPPGNLGPCGPRGKPGKDGKPGTPGPA 1405
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 52.0 bits (123), Expect = 8e-07
Identities = 48/135 (35%), Positives = 55/135 (40%), Gaps = 24/135 (17%)
Query: 197 EPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRA 256
E G E PG P RGA GP P P V G+ G L G G G + R
Sbjct: 352 EKGDEGTPGPPGP----RGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERG 407
Query: 257 KPSESRHPGPGSFGRGGSLGL-GGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVS 315
+P + PGS G GS GL G G GP PG+ I R G PP
Sbjct: 408 RPGKDAMGTPGSPGCAGSPGLPGSPGPPGP----PGD--IVFRKG----PP--------- 448
Query: 316 GDYGHPVYIVQDGPP 330
GD+G P Y+ G P
Sbjct: 449 GDHGLPGYLGSPGIP 463
Score = 46.6 bits (109), Expect = 3e-05
Identities = 47/157 (29%), Positives = 58/157 (36%), Gaps = 13/157 (8%)
Query: 185 PMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAG 244
P ER H E G LPG P + + G +GP P P G G + G G
Sbjct: 758 PGERGNSGEHG-EIGLPGLPGLPGTPG-NEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRG 815
Query: 245 A------GGAMCWRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALR 298
A G + RR K PG R G G G G+ + E G LG +
Sbjct: 816 AQGLPGLNGLKGQQGRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLG---Q 872
Query: 299 GGGAADPPFC--PHYEKVSGDYGHPVYIVQDGPPQSP 333
G +P P + V G G P I GPP +P
Sbjct: 873 RGYPGNPGILGPPGEDGVIGMMGFPGAIGPPGPPGNP 909
Score = 42.7 bits (99), Expect = 5e-04
Identities = 48/170 (28%), Positives = 64/170 (37%), Gaps = 41/170 (24%)
Query: 173 GGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAA 232
G A PR P G ++ PG+ G P S S GA GP PP
Sbjct: 1210 GDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRG-SPGAPGPPGPPGSH------ 1262
Query: 233 GGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGP-GSFGRGGSLGLGGGGGMGPREAEPG 291
++G+ G G+M HPGP G G G +G G R PG
Sbjct: 1263 ------VIGIKGDKGSM------------GHPGPKGPPGTAGDMGPPG------RLGAPG 1298
Query: 292 ELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGP-----PQSPPNI 336
G+ G DP F + V G+ G+P ++ GP P+ PP +
Sbjct: 1299 TPGLP---GPRGDPGF-QGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGV 1344
Score = 41.6 bits (96), Expect = 0.001
Identities = 56/185 (30%), Positives = 68/185 (36%), Gaps = 28/185 (15%)
Query: 168 GQSPRGG--AVPRKP-VSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPS 224
GQ R G +P P V +P + A S E G + PGDP S S G GP PP
Sbjct: 560 GQPGRKGLDGIPGTPGVKGLPGPKGE-LALSGEKGDQGPPGDPGSPG-SPGPAGPAGPPG 617
Query: 225 M-----PAVAGAAGGLALLLLGVAGAGGAMCWRRRRA----------KPSESRHPGP-GS 268
P + G G + G G G R + P HPGP G
Sbjct: 618 YGPQGEPGLQGTQG-----VPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGP 672
Query: 269 FGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDG 328
G GSLG G G+ + EPG GI G P + G G P + + G
Sbjct: 673 PGIPGSLGKCGDPGLPGPDGEPGIPGIGF--PGPPGPKGDQGFPGTKGSLGCPGKMGEPG 730
Query: 329 PPQSP 333
P P
Sbjct: 731 LPGKP 735
Score = 40.0 bits (92), Expect = 0.003
Identities = 45/138 (32%), Positives = 55/138 (39%), Gaps = 30/138 (21%)
Query: 197 EPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRA 256
EPG + G+P G +G P MP + G G L G AG G R
Sbjct: 956 EPGLKGFAGNP-------GEKGNRGVPGMPGLKGLKG-----LPGPAGPPGP------RG 997
Query: 257 KPSESRHPG-PGSFGRGGSLG-LGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKV 314
+ +PG PG G GS+G +G G G R G LG G A P P +
Sbjct: 998 DLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKR----GTLGFP----GRAGRPGLPGIHGL 1049
Query: 315 SGDYGHPVYI--VQDGPP 330
GD G P Y + GPP
Sbjct: 1050 QGDKGEPGYSEGTRPGPP 1067
Score = 39.3 bits (90), Expect = 0.005
Identities = 50/192 (26%), Positives = 68/192 (35%), Gaps = 46/192 (23%)
Query: 168 GQSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPA 227
G + GA ++ E+ + D G + PG + LPG P G GP+ PP P
Sbjct: 151 GLKGQKGAPAKEEDIELDAKGDPGLPGA--PGPQGLPGPP-------GFPGPVGPPGPPG 201
Query: 228 VAGAAGGLALLLLGVAGAGGAMCWR-----RRRAKPSESRHPGP---------------- 266
G G +G G G M R R + PGP
Sbjct: 202 FFGFPGA-----MGPRGPKGHMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTD 256
Query: 267 --------GSFGRGGSLGLGG--GGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSG 316
G+ G G G G G G + PG+ G+ + G P F P E V G
Sbjct: 257 LKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPGF-PGSEGVKG 315
Query: 317 DYGHPVYIVQDG 328
+ G P + +DG
Sbjct: 316 NRGFPGLMGEDG 327
Score = 38.1 bits (87), Expect = 0.011
Identities = 66/237 (27%), Positives = 81/237 (34%), Gaps = 60/237 (25%)
Query: 141 SDGTREGLESLQGGVCLTRGMKVLLRVGQ-SPRGGAVPRKPVSEMPMERDRGAAHSLEPG 199
S+GTR G G L M +GQ P G P P GA S PG
Sbjct: 1059 SEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGP---------EGAPGS--PG 1107
Query: 200 KENLPGDPTSNATS-----RGAEGP---LPPPSMPAVAGAAGGLALL-------LLGVAG 244
LPG P + +G GP PP +P G+ G + + + G AG
Sbjct: 1108 SPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAG 1167
Query: 245 AGGAMCWRRRRAKPSESRHPG-------------PGSFGRGGSLGLGGGGGMGPREAEPG 291
G RA P +PG PG GR G++G G G E PG
Sbjct: 1168 EKGET--GLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPG 1225
Query: 292 ELGI---------------ALRGG-GAADPPFCP--HYEKVSGDYGHPVYIVQDGPP 330
G+ RG GA PP P H + GD G + GPP
Sbjct: 1226 PPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPP 1282
Score = 37.7 bits (86), Expect = 0.015
Identities = 44/149 (29%), Positives = 60/149 (40%), Gaps = 13/149 (8%)
Query: 195 SLEP-GKENLPGDP--TSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCW 251
+L+P G+ +PGDP +G +G P + + G G LAL G G G
Sbjct: 543 TLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALS--GEKGDQGPPGD 600
Query: 252 RRRRAKPSESRHPGP------GSFGRGGSLGLGGGGGMGPREAEP-GELGIALRGGGAAD 304
P + GP G G G+ G+ G G P EA P GEL ++ G
Sbjct: 601 PGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPG-PPGEAGPRGELSVSTPVPGPPG 659
Query: 305 PPFCPHYEKVSGDYGHPVYIVQDGPPQSP 333
PP P + G G P + + G P P
Sbjct: 660 PPGPPGHPGPQGPPGIPGSLGKCGDPGLP 688
Score = 37.4 bits (85), Expect = 0.019
Identities = 40/139 (28%), Positives = 51/139 (36%), Gaps = 22/139 (15%)
Query: 197 EPGKENLPGDPTSNAT-----SRGAEGPLPPPSMPAVAGAAGGLALLLL-GVAGAGGAMC 250
+PG + PG S G GP+ P P V G G L ++ L G G G
Sbjct: 1308 DPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPGT-- 1365
Query: 251 WRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGG--------GA 302
+P PGP G G+LG G G ++ +PG G A G G
Sbjct: 1366 ----PGEPGMQGEPGPP--GPPGNLGPCGPRGKPGKDGKPGTPGPAGEKGNKGSKGEPGP 1419
Query: 303 ADPPFCPHYEKVSGDYGHP 321
A P + GD G P
Sbjct: 1420 AGSDGLPGLKGKRGDSGSP 1438
Score = 36.6 bits (83), Expect = 0.033
Identities = 42/159 (26%), Positives = 51/159 (32%), Gaps = 30/159 (18%)
Query: 197 EPGKENLPGDPTSNATS-----RGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCW 251
E G++ PG P S G GP P P + G G GV G G +
Sbjct: 47 EKGEKGFPGPPGSPGQKGFTGPEGLPGPQGPKGFPGLPGLTGSK-----GVRGISGLPGF 101
Query: 252 RRRRAKPSESRHPGP----------GSFGRGGSLGL----------GGGGGMGPREAEPG 291
P + GP GS G G GL G G G + A
Sbjct: 102 SGSPGLPGTPGNTGPYGLVGVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQKGAPAK 161
Query: 292 ELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGPP 330
E I L G P P + + G G P + GPP
Sbjct: 162 EEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPP 200
Score = 35.8 bits (81), Expect = 0.056
Identities = 45/148 (30%), Positives = 54/148 (36%), Gaps = 21/148 (14%)
Query: 197 EPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRA 256
EPG +PG N G++G P AG G L G+ G G +
Sbjct: 1007 EPGLRGIPGS-MGNMGMPGSKGKRGTLGFPGRAGRPG-----LPGIHGLQGD------KG 1054
Query: 257 KPSESRHPGPGSFGRGGSLGLGGG----GGMGPREAEPGELGIALRGGGAADP--PFCPH 310
+P S PG G G GL G G MG + PG LG A G P P P
Sbjct: 1055 EPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMG-QPGPPGHLGPAGPEGAPGSPGSPGLPG 1113
Query: 311 YEKVSGDYGHPVYIVQDGPP--QSPPNI 336
GD G GPP + PP +
Sbjct: 1114 KPGPHGDLGFKGIKGLLGPPGIRGPPGL 1141
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 52.0 bits (123), Expect = 8e-07
Identities = 48/135 (35%), Positives = 55/135 (40%), Gaps = 24/135 (17%)
Query: 197 EPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRA 256
E G E PG P RGA GP P P V G+ G L G G G + R
Sbjct: 352 EKGDEGTPGPPGP----RGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERG 407
Query: 257 KPSESRHPGPGSFGRGGSLGL-GGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVS 315
+P + PGS G GS GL G G GP PG+ I R G PP
Sbjct: 408 RPGKDAMGTPGSPGCAGSPGLPGSPGPPGP----PGD--IVFRKG----PP--------- 448
Query: 316 GDYGHPVYIVQDGPP 330
GD+G P Y+ G P
Sbjct: 449 GDHGLPGYLGSPGIP 463
Score = 46.6 bits (109), Expect = 3e-05
Identities = 47/157 (29%), Positives = 58/157 (36%), Gaps = 13/157 (8%)
Query: 185 PMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAG 244
P ER H E G LPG P + + G +GP P P G G + G G
Sbjct: 758 PGERGNSGEHG-EIGLPGLPGLPGTPG-NEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRG 815
Query: 245 A------GGAMCWRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALR 298
A G + RR K PG R G G G G+ + E G LG +
Sbjct: 816 AQGLPGLNGLKGQQGRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLG---Q 872
Query: 299 GGGAADPPFC--PHYEKVSGDYGHPVYIVQDGPPQSP 333
G +P P + V G G P I GPP +P
Sbjct: 873 RGYPGNPGILGPPGEDGVIGMMGFPGAIGPPGPPGNP 909
Score = 42.7 bits (99), Expect = 5e-04
Identities = 48/170 (28%), Positives = 64/170 (37%), Gaps = 41/170 (24%)
Query: 173 GGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAA 232
G A PR P G ++ PG+ G P S S GA GP PP
Sbjct: 1210 GDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRG-SPGAPGPPGPPGSH------ 1262
Query: 233 GGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGP-GSFGRGGSLGLGGGGGMGPREAEPG 291
++G+ G G+M HPGP G G G +G G R PG
Sbjct: 1263 ------VIGIKGDKGSM------------GHPGPKGPPGTAGDMGPPG------RLGAPG 1298
Query: 292 ELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGP-----PQSPPNI 336
G+ G DP F + V G+ G+P ++ GP P+ PP +
Sbjct: 1299 TPGLP---GPRGDPGF-QGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGV 1344
Score = 41.6 bits (96), Expect = 0.001
Identities = 56/185 (30%), Positives = 68/185 (36%), Gaps = 28/185 (15%)
Query: 168 GQSPRGG--AVPRKP-VSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPS 224
GQ R G +P P V +P + A S E G + PGDP S S G GP PP
Sbjct: 560 GQPGRKGLDGIPGTPGVKGLPGPKGE-LALSGEKGDQGPPGDPGSPG-SPGPAGPAGPPG 617
Query: 225 M-----PAVAGAAGGLALLLLGVAGAGGAMCWRRRRA----------KPSESRHPGP-GS 268
P + G G + G G G R + P HPGP G
Sbjct: 618 YGPQGEPGLQGTQG-----VPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGP 672
Query: 269 FGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDG 328
G GSLG G G+ + EPG GI G P + G G P + + G
Sbjct: 673 PGIPGSLGKCGDPGLPGPDGEPGIPGIGF--PGPPGPKGDQGFPGTKGSLGCPGKMGEPG 730
Query: 329 PPQSP 333
P P
Sbjct: 731 LPGKP 735
Score = 40.0 bits (92), Expect = 0.003
Identities = 45/138 (32%), Positives = 55/138 (39%), Gaps = 30/138 (21%)
Query: 197 EPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRA 256
EPG + G+P G +G P MP + G G L G AG G R
Sbjct: 956 EPGLKGFAGNP-------GEKGNRGVPGMPGLKGLKG-----LPGPAGPPGP------RG 997
Query: 257 KPSESRHPG-PGSFGRGGSLG-LGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKV 314
+ +PG PG G GS+G +G G G R G LG G A P P +
Sbjct: 998 DLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKR----GTLGFP----GRAGRPGLPGIHGL 1049
Query: 315 SGDYGHPVYI--VQDGPP 330
GD G P Y + GPP
Sbjct: 1050 QGDKGEPGYSEGTRPGPP 1067
Score = 39.3 bits (90), Expect = 0.005
Identities = 50/192 (26%), Positives = 68/192 (35%), Gaps = 46/192 (23%)
Query: 168 GQSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPA 227
G + GA ++ E+ + D G + PG + LPG P G GP+ PP P
Sbjct: 151 GLKGQKGAPAKEEDIELDAKGDPGLPGA--PGPQGLPGPP-------GFPGPVGPPGPPG 201
Query: 228 VAGAAGGLALLLLGVAGAGGAMCWR-----RRRAKPSESRHPGP---------------- 266
G G +G G G M R R + PGP
Sbjct: 202 FFGFPGA-----MGPRGPKGHMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTD 256
Query: 267 --------GSFGRGGSLGLGG--GGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSG 316
G+ G G G G G G + PG+ G+ + G P F P E V G
Sbjct: 257 LKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPGF-PGSEGVKG 315
Query: 317 DYGHPVYIVQDG 328
+ G P + +DG
Sbjct: 316 NRGFPGLMGEDG 327
Score = 38.1 bits (87), Expect = 0.011
Identities = 66/237 (27%), Positives = 81/237 (34%), Gaps = 60/237 (25%)
Query: 141 SDGTREGLESLQGGVCLTRGMKVLLRVGQ-SPRGGAVPRKPVSEMPMERDRGAAHSLEPG 199
S+GTR G G L M +GQ P G P P GA S PG
Sbjct: 1059 SEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGP---------EGAPGS--PG 1107
Query: 200 KENLPGDPTSNATS-----RGAEGP---LPPPSMPAVAGAAGGLALL-------LLGVAG 244
LPG P + +G GP PP +P G+ G + + + G AG
Sbjct: 1108 SPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAG 1167
Query: 245 AGGAMCWRRRRAKPSESRHPG-------------PGSFGRGGSLGLGGGGGMGPREAEPG 291
G RA P +PG PG GR G++G G G E PG
Sbjct: 1168 EKGET--GLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPG 1225
Query: 292 ELGI---------------ALRGG-GAADPPFCP--HYEKVSGDYGHPVYIVQDGPP 330
G+ RG GA PP P H + GD G + GPP
Sbjct: 1226 PPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPP 1282
Score = 37.7 bits (86), Expect = 0.015
Identities = 44/149 (29%), Positives = 60/149 (40%), Gaps = 13/149 (8%)
Query: 195 SLEP-GKENLPGDP--TSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCW 251
+L+P G+ +PGDP +G +G P + + G G LAL G G G
Sbjct: 543 TLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALS--GEKGDQGPPGD 600
Query: 252 RRRRAKPSESRHPGP------GSFGRGGSLGLGGGGGMGPREAEP-GELGIALRGGGAAD 304
P + GP G G G+ G+ G G P EA P GEL ++ G
Sbjct: 601 PGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPG-PPGEAGPRGELSVSTPVPGPPG 659
Query: 305 PPFCPHYEKVSGDYGHPVYIVQDGPPQSP 333
PP P + G G P + + G P P
Sbjct: 660 PPGPPGHPGPQGPPGIPGSLGKCGDPGLP 688
Score = 37.4 bits (85), Expect = 0.019
Identities = 40/139 (28%), Positives = 51/139 (36%), Gaps = 22/139 (15%)
Query: 197 EPGKENLPGDPTSNAT-----SRGAEGPLPPPSMPAVAGAAGGLALLLL-GVAGAGGAMC 250
+PG + PG S G GP+ P P V G G L ++ L G G G
Sbjct: 1308 DPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPGT-- 1365
Query: 251 WRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGG--------GA 302
+P PGP G G+LG G G ++ +PG G A G G
Sbjct: 1366 ----PGEPGMQGEPGPP--GPPGNLGPCGPRGKPGKDGKPGTPGPAGEKGNKGSKGEPGP 1419
Query: 303 ADPPFCPHYEKVSGDYGHP 321
A P + GD G P
Sbjct: 1420 AGSDGLPGLKGKRGDSGSP 1438
Score = 36.6 bits (83), Expect = 0.033
Identities = 42/159 (26%), Positives = 51/159 (32%), Gaps = 30/159 (18%)
Query: 197 EPGKENLPGDPTSNATS-----RGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCW 251
E G++ PG P S G GP P P + G G GV G G +
Sbjct: 47 EKGEKGFPGPPGSPGQKGFTGPEGLPGPQGPKGFPGLPGLTGSK-----GVRGISGLPGF 101
Query: 252 RRRRAKPSESRHPGP----------GSFGRGGSLGL----------GGGGGMGPREAEPG 291
P + GP GS G G GL G G G + A
Sbjct: 102 SGSPGLPGTPGNTGPYGLVGVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQKGAPAK 161
Query: 292 ELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGPP 330
E I L G P P + + G G P + GPP
Sbjct: 162 EEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPP 200
Score = 35.8 bits (81), Expect = 0.056
Identities = 45/148 (30%), Positives = 54/148 (36%), Gaps = 21/148 (14%)
Query: 197 EPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRA 256
EPG +PG N G++G P AG G L G+ G G +
Sbjct: 1007 EPGLRGIPGS-MGNMGMPGSKGKRGTLGFPGRAGRPG-----LPGIHGLQGD------KG 1054
Query: 257 KPSESRHPGPGSFGRGGSLGLGGG----GGMGPREAEPGELGIALRGGGAADP--PFCPH 310
+P S PG G G GL G G MG + PG LG A G P P P
Sbjct: 1055 EPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMG-QPGPPGHLGPAGPEGAPGSPGSPGLPG 1113
Query: 311 YEKVSGDYGHPVYIVQDGPP--QSPPNI 336
GD G GPP + PP +
Sbjct: 1114 KPGPHGDLGFKGIKGLLGPPGIRGPPGL 1141
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 52.0 bits (123), Expect = 8e-07
Identities = 48/135 (35%), Positives = 55/135 (40%), Gaps = 24/135 (17%)
Query: 197 EPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRA 256
E G E PG P RGA GP P P V G+ G L G G G + R
Sbjct: 352 EKGDEGTPGPPGP----RGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERG 407
Query: 257 KPSESRHPGPGSFGRGGSLGL-GGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVS 315
+P + PGS G GS GL G G GP PG+ I R G PP
Sbjct: 408 RPGKDAMGTPGSPGCAGSPGLPGSPGPPGP----PGD--IVFRKG----PP--------- 448
Query: 316 GDYGHPVYIVQDGPP 330
GD+G P Y+ G P
Sbjct: 449 GDHGLPGYLGSPGIP 463
Score = 46.6 bits (109), Expect = 3e-05
Identities = 47/157 (29%), Positives = 58/157 (36%), Gaps = 13/157 (8%)
Query: 185 PMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAG 244
P ER H E G LPG P + + G +GP P P G G + G G
Sbjct: 758 PGERGNSGEHG-EIGLPGLPGLPGTPG-NEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRG 815
Query: 245 A------GGAMCWRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALR 298
A G + RR K PG R G G G G+ + E G LG +
Sbjct: 816 AQGLPGLNGLKGQQGRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLG---Q 872
Query: 299 GGGAADPPFC--PHYEKVSGDYGHPVYIVQDGPPQSP 333
G +P P + V G G P I GPP +P
Sbjct: 873 RGYPGNPGILGPPGEDGVIGMMGFPGAIGPPGPPGNP 909
Score = 42.7 bits (99), Expect = 5e-04
Identities = 48/170 (28%), Positives = 64/170 (37%), Gaps = 41/170 (24%)
Query: 173 GGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAA 232
G A PR P G ++ PG+ G P S S GA GP PP
Sbjct: 1210 GDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRG-SPGAPGPPGPPGSH------ 1262
Query: 233 GGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGP-GSFGRGGSLGLGGGGGMGPREAEPG 291
++G+ G G+M HPGP G G G +G G R PG
Sbjct: 1263 ------VIGIKGDKGSM------------GHPGPKGPPGTAGDMGPPG------RLGAPG 1298
Query: 292 ELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGP-----PQSPPNI 336
G+ G DP F + V G+ G+P ++ GP P+ PP +
Sbjct: 1299 TPGLP---GPRGDPGF-QGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGV 1344
Score = 41.6 bits (96), Expect = 0.001
Identities = 56/185 (30%), Positives = 68/185 (36%), Gaps = 28/185 (15%)
Query: 168 GQSPRGG--AVPRKP-VSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPS 224
GQ R G +P P V +P + A S E G + PGDP S S G GP PP
Sbjct: 560 GQPGRKGLDGIPGTPGVKGLPGPKGE-LALSGEKGDQGPPGDPGSPG-SPGPAGPAGPPG 617
Query: 225 M-----PAVAGAAGGLALLLLGVAGAGGAMCWRRRRA----------KPSESRHPGP-GS 268
P + G G + G G G R + P HPGP G
Sbjct: 618 YGPQGEPGLQGTQG-----VPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGP 672
Query: 269 FGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDG 328
G GSLG G G+ + EPG GI G P + G G P + + G
Sbjct: 673 PGIPGSLGKCGDPGLPGPDGEPGIPGIGF--PGPPGPKGDQGFPGTKGSLGCPGKMGEPG 730
Query: 329 PPQSP 333
P P
Sbjct: 731 LPGKP 735
Score = 40.0 bits (92), Expect = 0.003
Identities = 45/138 (32%), Positives = 55/138 (39%), Gaps = 30/138 (21%)
Query: 197 EPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRA 256
EPG + G+P G +G P MP + G G L G AG G R
Sbjct: 956 EPGLKGFAGNP-------GEKGNRGVPGMPGLKGLKG-----LPGPAGPPGP------RG 997
Query: 257 KPSESRHPG-PGSFGRGGSLG-LGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKV 314
+ +PG PG G GS+G +G G G R G LG G A P P +
Sbjct: 998 DLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKR----GTLGFP----GRAGRPGLPGIHGL 1049
Query: 315 SGDYGHPVYI--VQDGPP 330
GD G P Y + GPP
Sbjct: 1050 QGDKGEPGYSEGTRPGPP 1067
Score = 39.3 bits (90), Expect = 0.005
Identities = 50/192 (26%), Positives = 68/192 (35%), Gaps = 46/192 (23%)
Query: 168 GQSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPA 227
G + GA ++ E+ + D G + PG + LPG P G GP+ PP P
Sbjct: 151 GLKGQKGAPAKEEDIELDAKGDPGLPGA--PGPQGLPGPP-------GFPGPVGPPGPPG 201
Query: 228 VAGAAGGLALLLLGVAGAGGAMCWR-----RRRAKPSESRHPGP---------------- 266
G G +G G G M R R + PGP
Sbjct: 202 FFGFPGA-----MGPRGPKGHMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTD 256
Query: 267 --------GSFGRGGSLGLGG--GGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSG 316
G+ G G G G G G + PG+ G+ + G P F P E V G
Sbjct: 257 LKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPGF-PGSEGVKG 315
Query: 317 DYGHPVYIVQDG 328
+ G P + +DG
Sbjct: 316 NRGFPGLMGEDG 327
Score = 38.1 bits (87), Expect = 0.011
Identities = 66/237 (27%), Positives = 81/237 (34%), Gaps = 60/237 (25%)
Query: 141 SDGTREGLESLQGGVCLTRGMKVLLRVGQ-SPRGGAVPRKPVSEMPMERDRGAAHSLEPG 199
S+GTR G G L M +GQ P G P P GA S PG
Sbjct: 1059 SEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGP---------EGAPGS--PG 1107
Query: 200 KENLPGDPTSNATS-----RGAEGP---LPPPSMPAVAGAAGGLALL-------LLGVAG 244
LPG P + +G GP PP +P G+ G + + + G AG
Sbjct: 1108 SPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAG 1167
Query: 245 AGGAMCWRRRRAKPSESRHPG-------------PGSFGRGGSLGLGGGGGMGPREAEPG 291
G RA P +PG PG GR G++G G G E PG
Sbjct: 1168 EKGET--GLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPG 1225
Query: 292 ELGI---------------ALRGG-GAADPPFCP--HYEKVSGDYGHPVYIVQDGPP 330
G+ RG GA PP P H + GD G + GPP
Sbjct: 1226 PPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPP 1282
Score = 37.7 bits (86), Expect = 0.015
Identities = 44/149 (29%), Positives = 60/149 (40%), Gaps = 13/149 (8%)
Query: 195 SLEP-GKENLPGDP--TSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCW 251
+L+P G+ +PGDP +G +G P + + G G LAL G G G
Sbjct: 543 TLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALS--GEKGDQGPPGD 600
Query: 252 RRRRAKPSESRHPGP------GSFGRGGSLGLGGGGGMGPREAEP-GELGIALRGGGAAD 304
P + GP G G G+ G+ G G P EA P GEL ++ G
Sbjct: 601 PGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPG-PPGEAGPRGELSVSTPVPGPPG 659
Query: 305 PPFCPHYEKVSGDYGHPVYIVQDGPPQSP 333
PP P + G G P + + G P P
Sbjct: 660 PPGPPGHPGPQGPPGIPGSLGKCGDPGLP 688
Score = 37.4 bits (85), Expect = 0.019
Identities = 40/139 (28%), Positives = 51/139 (36%), Gaps = 22/139 (15%)
Query: 197 EPGKENLPGDPTSNAT-----SRGAEGPLPPPSMPAVAGAAGGLALLLL-GVAGAGGAMC 250
+PG + PG S G GP+ P P V G G L ++ L G G G
Sbjct: 1308 DPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPGT-- 1365
Query: 251 WRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGG--------GA 302
+P PGP G G+LG G G ++ +PG G A G G
Sbjct: 1366 ----PGEPGMQGEPGPP--GPPGNLGPCGPRGKPGKDGKPGTPGPAGEKGNKGSKGEPGP 1419
Query: 303 ADPPFCPHYEKVSGDYGHP 321
A P + GD G P
Sbjct: 1420 AGSDGLPGLKGKRGDSGSP 1438
Score = 36.6 bits (83), Expect = 0.033
Identities = 42/159 (26%), Positives = 51/159 (32%), Gaps = 30/159 (18%)
Query: 197 EPGKENLPGDPTSNATS-----RGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCW 251
E G++ PG P S G GP P P + G G GV G G +
Sbjct: 47 EKGEKGFPGPPGSPGQKGFTGPEGLPGPQGPKGFPGLPGLTGSK-----GVRGISGLPGF 101
Query: 252 RRRRAKPSESRHPGP----------GSFGRGGSLGL----------GGGGGMGPREAEPG 291
P + GP GS G G GL G G G + A
Sbjct: 102 SGSPGLPGTPGNTGPYGLVGVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQKGAPAK 161
Query: 292 ELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGPP 330
E I L G P P + + G G P + GPP
Sbjct: 162 EEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPP 200
Score = 35.8 bits (81), Expect = 0.056
Identities = 45/148 (30%), Positives = 54/148 (36%), Gaps = 21/148 (14%)
Query: 197 EPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRA 256
EPG +PG N G++G P AG G L G+ G G +
Sbjct: 1007 EPGLRGIPGS-MGNMGMPGSKGKRGTLGFPGRAGRPG-----LPGIHGLQGD------KG 1054
Query: 257 KPSESRHPGPGSFGRGGSLGLGGG----GGMGPREAEPGELGIALRGGGAADP--PFCPH 310
+P S PG G G GL G G MG + PG LG A G P P P
Sbjct: 1055 EPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMG-QPGPPGHLGPAGPEGAPGSPGSPGLPG 1113
Query: 311 YEKVSGDYGHPVYIVQDGPP--QSPPNI 336
GD G GPP + PP +
Sbjct: 1114 KPGPHGDLGFKGIKGLLGPPGIRGPPGL 1141
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 50.1 bits (118), Expect = 3e-06
Identities = 49/152 (32%), Positives = 59/152 (38%), Gaps = 25/152 (16%)
Query: 198 PGK--ENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRR 255
PGK E P P + G GP PP P + G AG + + G G G R
Sbjct: 114 PGKPGERGPYGPKGDVGPAGLPGPRGPPGPPGIPGPAG---ISVPGKPGQQGPTGAPGPR 170
Query: 256 AKPSESRHPG-PGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGG--GAADPP------ 306
P E PG PG G+ G +G G G PGE G+ G G + PP
Sbjct: 171 GFPGEKGAPGVPGMNGQKGEMGYGAPG-------RPGERGLPGPQGPTGPSGPPGVGKRG 223
Query: 307 --FCPHYEKVSGDYGHPVYIVQDGP--PQSPP 334
P + GD G P + GP PQ PP
Sbjct: 224 ENGVPGQPGIKGDRGFPGEMGPIGPPGPQGPP 255
Score = 47.4 bits (111), Expect = 2e-05
Identities = 54/173 (31%), Positives = 65/173 (37%), Gaps = 29/173 (16%)
Query: 171 PRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAG 230
P+G P P + +RG+ S GK PG P G +GP P +P G
Sbjct: 360 PKGETGPAGPAGYPGAKGERGSPGS--DGKPGYPGKP-------GLDGPKGNPGLPGPKG 410
Query: 231 AAG-GLALLLLGVAGAGGAMCWRRRRAKPSESRHPG-PGSFGRGGSLGL-------GGGG 281
G G L G G GA + PG PG+ G G G+ G G
Sbjct: 411 DPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPG 470
Query: 282 GMGPREAEPGELGIALRG-GGAADPPFCPHYEKVSGDYGHPVYIVQDGPPQSP 333
GP PG GIA +G G PP P SG+ G P GPP P
Sbjct: 471 SPGP----PGPAGIATKGLNGPTGPPGPPGPRGHSGEPGLP------GPPGPP 513
Score = 36.6 bits (83), Expect = 0.033
Identities = 30/101 (29%), Positives = 38/101 (37%), Gaps = 5/101 (4%)
Query: 199 GKENLPGDP--TSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRA 256
G+ +PG P + G GP+ PP G G + G AGA G +
Sbjct: 223 GENGVPGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGIGKPGAAGAPGQPGIPGTKG 282
Query: 257 KPSE---SRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELG 294
P + PGP FG+ G GL G G PG G
Sbjct: 283 LPGAPGIAGPPGPPGFGKPGLPGLKGERGPAGLPGGPGAKG 323
Score = 35.0 bits (79), Expect = 0.096
Identities = 41/135 (30%), Positives = 48/135 (35%), Gaps = 24/135 (17%)
Query: 199 GKENLPGDPTSNATSRGAEGPLPPPSM-----------PAVAGAAGGLALLLLGVAGAGG 247
G++ PG P A RG GP PP P + G G A+ GV G G
Sbjct: 57 GEQGTPGPP-GPAGPRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGPSAVGKPGVPGLPG 115
Query: 248 AMCWRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRG-GGAADPP 306
KP E GP G G GL G G PG GI++ G G P
Sbjct: 116 ---------KPGERGPYGPK--GDVGPAGLPGPRGPPGPPGIPGPAGISVPGKPGQQGPT 164
Query: 307 FCPHYEKVSGDYGHP 321
P G+ G P
Sbjct: 165 GAPGPRGFPGEKGAP 179
Score = 33.9 bits (76), Expect = 0.21
Identities = 43/157 (27%), Positives = 54/157 (34%), Gaps = 30/157 (19%)
Query: 171 PRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSN---------ATSRGAEGPLP 221
P G +VP KP + P PG++ PG P N A R E LP
Sbjct: 149 PAGISVPGKPGQQGPTGAPGPRGF---PGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLP 205
Query: 222 PPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESR------------HPGPGSF 269
P P G +G + G G G + R P E GP
Sbjct: 206 GPQGPT--GPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGI 263
Query: 270 GRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPP 306
G+ G+ G G G+ + PG GIA G PP
Sbjct: 264 GKPGAAGAPGQPGIPGTKGLPGAPGIA----GPPGPP 296
Score = 33.1 bits (74), Expect = 0.37
Identities = 49/174 (28%), Positives = 61/174 (35%), Gaps = 38/174 (21%)
Query: 171 PRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSR--GAEG----PLPP-- 222
P G P+ P E RG +PG PG P T GA G P PP
Sbjct: 245 PIGPPGPQGPPGE------RGPEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGF 298
Query: 223 --PSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPG-PGSFGRGGSLGLGG 279
P +P + G G G+ G GA + + + PG PG G G++G G
Sbjct: 299 GKPGLPGLKGERGPA-----GLPGGPGA------KGEQGPAGLPGKPGLTGPPGNMGPQG 347
Query: 280 GGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGPPQSP 333
G+ PG G G A Y G+ G P DG P P
Sbjct: 348 PKGIPGSHGLPGPKGETGPAGPAG-------YPGAKGERGSP---GSDGKPGYP 391
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 49.7 bits (117), Expect = 4e-06
Identities = 58/185 (31%), Positives = 71/185 (38%), Gaps = 35/185 (18%)
Query: 169 QSPRG--GAV-PRKPVSEMPMERDRGAAHSLEPGKENLPGD--------PTSNATSRGAE 217
+ PRG G V P PV E +RG PG + LPG P ++ +G++
Sbjct: 503 RGPRGDPGTVGPPGPVGERGAPGNRGF-----PGSDGLPGPKGAQGERGPVGSSGPKGSQ 557
Query: 218 GPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGP----GSFGRGG 273
G P P + GA G L G G G P E PGP G G+ G
Sbjct: 558 GDPGRPGEPGLPGARG-----LTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPG 612
Query: 274 SLGLGGGGGMGPREAEPGELGIA----LRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGP 329
S+GL G G +PGE G A RG D P SG G P + G
Sbjct: 613 SMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGP-----SGPVGPPGLAGERG- 666
Query: 330 PQSPP 334
Q PP
Sbjct: 667 EQGPP 671
Score = 39.3 bits (90), Expect = 0.005
Identities = 41/142 (28%), Positives = 50/142 (35%), Gaps = 6/142 (4%)
Query: 198 PGKENLPGDP--TSNATSRGAEGPLPPPSMPAVAGAAGGLALL-LLGVAGAGGAMCWRRR 254
PG PG+P A GA GP P G G + L G G G +
Sbjct: 374 PGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGP 433
Query: 255 RAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKV 314
P S PG S G GS G G G +PG+ G+ G A P P +
Sbjct: 434 TGSPGTSGPPG--SAGPPGSPGPQGSTGPQGIRGQPGDPGVP-GFKGEAGPKGEPGPHGI 490
Query: 315 SGDYGHPVYIVQDGPPQSPPNI 336
G G P + GP P +
Sbjct: 491 QGPIGPPGEEGKRGPRGDPGTV 512
Score = 39.3 bits (90), Expect = 0.005
Identities = 38/135 (28%), Positives = 51/135 (37%), Gaps = 19/135 (14%)
Query: 169 QSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATS-----RGAEGPLPPP 223
Q P G + E + D G+ PG + L G P + + +G G PP
Sbjct: 851 QGPDGQPGVKGEPGEPGQKGDAGS-----PGPQGLAGSPGPHGPNGVPGLKGGRGTQGPP 905
Query: 224 SMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPG----PGSFGRGGSLGLGG 279
G+AG + G G GA +P + PG PGS GR G G G
Sbjct: 906 GATGFPGSAGRV-----GPPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAG 960
Query: 280 GGGMGPREAEPGELG 294
G + +PGE G
Sbjct: 961 PPGGPGDKGDPGEDG 975
Score = 39.3 bits (90), Expect = 0.005
Identities = 38/129 (29%), Positives = 49/129 (37%), Gaps = 16/129 (12%)
Query: 174 GAVPRKPVSEMPMERDRGAAHSLEPGKENLPGD--PTSNATSRGAEGPLPPPSM------ 225
G ++ + MP +R L PG PG PT +G GP+ PP
Sbjct: 987 GTTGQRGIVGMPGQRGERGMPGL-PGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGE 1045
Query: 226 PAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGP 285
P G AG G G GA+ R R P + PG S G G+ G G G
Sbjct: 1046 PGPEGPAGND-----GTPGRDGAVGERGDRGDPGPAGLPG--SQGAPGTPGPVGAPGDAG 1098
Query: 286 REAEPGELG 294
+ +PG G
Sbjct: 1099 QRGDPGSRG 1107
Score = 38.5 bits (88), Expect = 0.009
Identities = 46/166 (27%), Positives = 60/166 (36%), Gaps = 15/166 (9%)
Query: 169 QSPRGGAVPR-KPVSEMPMERDRGAAHSLEPGKENLPGDPTS---NATSRGAEGPLPPPS 224
Q PRG P+ +P P D +PG PG P+ + SR +
Sbjct: 140 QGPRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHPGPDGLSRPFSAQMAGLD 199
Query: 225 MPAVAGAAGGLALLLLGVAGAGGAMCWRRRRA------KPSESRHPGP----GSFGRGGS 274
+ G+ GL +G G G + ++ P E PGP GS G G
Sbjct: 200 EKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGP 259
Query: 275 LGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSGDYGH 320
G G G R PGE+G A GA P P + G GH
Sbjct: 260 PGKPGEDGEPGRNGNPGEVGFA-GSPGARGFPGAPGLPGLKGHRGH 304
Score = 38.1 bits (87), Expect = 0.011
Identities = 47/153 (30%), Positives = 57/153 (37%), Gaps = 25/153 (16%)
Query: 197 EPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALL-LLGVAGAGGAMCWRRRR 255
+PG + +PGDP GA GPL P G G + L G G G +
Sbjct: 691 KPGDQGVPGDP-------GAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGPK 743
Query: 256 AKPSESRHPG----PGSFGRGGSLGLGG-------GGGMGPREAEPGELGIALRGG--GA 302
P S PG PG G G G+ G GG+G + AE G A G G
Sbjct: 744 GSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAE----GTAGNDGARGL 799
Query: 303 ADPPFCPHYEKVSGDYGHPVYIVQDGPPQSPPN 335
P P +G+ G P GPP S N
Sbjct: 800 PGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGN 832
Score = 37.4 bits (85), Expect = 0.019
Identities = 36/111 (32%), Positives = 42/111 (37%), Gaps = 18/111 (16%)
Query: 198 PGKENLPGD-----PTSNATSRGAEGP--------LP-PPSMPAVAGAAGGLALLLLGVA 243
PGK+ G P A RG +GP LP PP P G G + G
Sbjct: 644 PGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVP--GDP 701
Query: 244 GAGGAMCWRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELG 294
GA G + R R P E PG G G G+ GG G + PG G
Sbjct: 702 GAVGPLGPRGERGNPGERGEPG--ITGLPGEKGMAGGHGPDGPKGSPGPSG 750
Score = 36.6 bits (83), Expect = 0.033
Identities = 45/158 (28%), Positives = 54/158 (34%), Gaps = 22/158 (13%)
Query: 171 PRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAG 230
P G P P E RG +PG PG P + G G +P G
Sbjct: 487 PHGIQGPIGPPGEEGKRGPRG-----DPGTVGPPG-PVGERGAPGNRGFPGSDGLPGPKG 540
Query: 231 AAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPG-------PGSFGRGGSLGLGGGGGM 283
A G G G+ G + +P E PG PG G G LG G G
Sbjct: 541 AQGER-----GPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGE 595
Query: 284 GPREAEPGELGIALRGGGAADPPFCPHYEKVSGDYGHP 321
R PG +GI + G P + SGD G P
Sbjct: 596 DGRPGPPGSIGIRGQPGSMG----LPGPKGSSGDPGKP 629
Score = 34.7 bits (78), Expect = 0.13
Identities = 35/109 (32%), Positives = 41/109 (37%), Gaps = 15/109 (13%)
Query: 189 DRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGA 248
DRG E G E G N +RG GPL PP G G G+ G G+
Sbjct: 778 DRGGIG--EKGAEGTAG----NDGARGLPGPLGPPGPAGPTGEKGEPG--PRGLVGPPGS 829
Query: 249 MCWRRRRAKPSESRHPGP-GSFGRGGSLGLGGGGGMGPREAEPGELGIA 296
R P GP G+ G G G G G+ EPG+ G A
Sbjct: 830 ------RGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDA 872
Score = 33.1 bits (74), Expect = 0.37
Identities = 32/108 (29%), Positives = 37/108 (34%), Gaps = 12/108 (11%)
Query: 198 PGKENLPGDP-----TSNATSRGAEGPLPPPSMPAVAGAAGGLALL-LLGVAGAGGAMCW 251
PG PG P + +G EGP P G AG + +G G G M
Sbjct: 284 PGARGFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRG-MPG 342
Query: 252 RRRRAKPS-----ESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELG 294
R R P H PG G G LG+ G G GE G
Sbjct: 343 ERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAG 390
Score = 32.7 bits (73), Expect = 0.48
Identities = 31/109 (28%), Positives = 42/109 (38%), Gaps = 17/109 (15%)
Query: 198 PGKENLPGDPTSNAT--SRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRR 255
PG PG P + T + GA+GP P G+AG G G G+ + R
Sbjct: 410 PGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPP-----GSPGPQGSTGPQGIR 464
Query: 256 AKPSESRHPG----------PGSFGRGGSLGLGGGGGMGPREAEPGELG 294
+P + PG PG G G +G G G +PG +G
Sbjct: 465 GQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVG 513
Score = 32.0 bits (71), Expect = 0.82
Identities = 34/129 (26%), Positives = 40/129 (31%), Gaps = 34/129 (26%)
Query: 172 RGGAVPRKPVSEMPMERDRG----AAHSLEPGKENLPGDPTSNAT--SRGAEGPLPPPSM 225
RG P+ P + DRG H G + LPG P N S G GP P
Sbjct: 1118 RGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGP 1177
Query: 226 PAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGP 285
P G +G + PG G G G+ G G
Sbjct: 1178 PGPVGPSG----------------------------KEGNPGPLGPIGPPGVRGSVGEAG 1209
Query: 286 REAEPGELG 294
E PGE G
Sbjct: 1210 PEGPPGEPG 1218
Score = 31.2 bits (69), Expect = 1.4
Identities = 31/112 (27%), Positives = 40/112 (35%), Gaps = 11/112 (9%)
Query: 197 EPGKENLPGD--PTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRR 254
+PG++ PG P A + G G + P G G L G AG G +
Sbjct: 970 DPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPG-----LPGPAGTPGKV---GP 1021
Query: 255 RAKPSESRHPGP-GSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADP 305
+ PGP G G G +G G G + PG G G DP
Sbjct: 1022 TGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDP 1073
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 48.1 bits (113), Expect = 1e-05
Identities = 48/163 (29%), Positives = 58/163 (35%), Gaps = 14/163 (8%)
Query: 171 PRGGAVPRKPVSEMPMERDRG-AAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVA 229
P+G P+ P E DRG PG G+P + G GP PP P
Sbjct: 118 PKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTP----GNPGPPGPPGPPGPP 173
Query: 230 GAAGGLALLLLG--VAGAGGAMCWRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPRE 287
G G A + G AGGA + PG G G G G G
Sbjct: 174 GLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPG----- 228
Query: 288 AEPGELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGPP 330
EPGE G++ G PP P G+ G P + GPP
Sbjct: 229 -EPGEPGVS-GPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPP 269
Score = 42.7 bits (99), Expect = 5e-04
Identities = 49/173 (28%), Positives = 63/173 (36%), Gaps = 28/173 (16%)
Query: 168 GQSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPS--- 224
G++ G V + P ER A L+ G LPG P ++ +GA GP PP
Sbjct: 687 GEAGAPGLVGPRGERGFPGERGSPGAQGLQ-GPRGLPGTPGTDGP-KGASGPAGPPGAQG 744
Query: 225 ------MPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSES---------RHPGP-GS 268
MP GAAG + G G G + + P + PGP G+
Sbjct: 745 PPGLQGMPGERGAAG-----IAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGA 799
Query: 269 FGRGGSLGLGGGGGMGPREAEPGELGIALRGG--GAADPPFCPHYEKVSGDYG 319
G G +G G G PGE G G G A PP G+ G
Sbjct: 800 NGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQG 852
Score = 42.0 bits (97), Expect = 8e-04
Identities = 42/135 (31%), Positives = 49/135 (36%), Gaps = 12/135 (8%)
Query: 177 PRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLA 236
PR P D G A +PGK G P +GA G P +P V G G
Sbjct: 241 PRGPPGPPGKPGDDGEAG--KPGKAGERGPPGP----QGARGFPGTPGLPGVKGHRGYPG 294
Query: 237 LLLLGVAGAGGAMCWRRRRAKPSESRHPGP----GSFGRGGSLGLGGGGGMGPREAEPGE 292
L G G GA + P E+ PGP G G G G G G + +PG
Sbjct: 295 LD--GAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGP 352
Query: 293 LGIALRGGGAADPPF 307
G G A P F
Sbjct: 353 AGPPGPVGPAGGPGF 367
Score = 40.0 bits (92), Expect = 0.003
Identities = 37/123 (30%), Positives = 43/123 (34%), Gaps = 16/123 (13%)
Query: 183 EMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGV 242
E + D GA P P PT +GA G PP GAAG +G
Sbjct: 853 EAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAG-----RVGP 907
Query: 243 AGAGGAMCWRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGA 302
G+ G P PGP G+ G G G G R EPG G A G
Sbjct: 908 PGSNG---------NPGPPGPPGPS--GKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEK 956
Query: 303 ADP 305
+P
Sbjct: 957 GEP 959
Score = 39.3 bits (90), Expect = 0.005
Identities = 44/152 (28%), Positives = 54/152 (35%), Gaps = 35/152 (23%)
Query: 198 PGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAK 257
PG + G P N G+ GP+ P +P G G AGA GA R +
Sbjct: 305 PGVKGESGSPGEN----GSPGPMGPRGLPGERGRTGP--------AGAAGA---RGNDGQ 349
Query: 258 PSESRHPGP-------------GSFGRGGSLGL-GGGGGMGPREAEPGELGIALRGGGAA 303
P + PGP G+ G G G G G GPR EPG G G +
Sbjct: 350 PGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPR-GEPGTPGSPGPAGASG 408
Query: 304 DP-----PFCPHYEKVSGDYGHPVYIVQDGPP 330
+P P G G P + GPP
Sbjct: 409 NPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPP 440
Score = 37.7 bits (86), Expect = 0.015
Identities = 40/130 (30%), Positives = 49/130 (37%), Gaps = 13/130 (10%)
Query: 197 EPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALL-LLGVAGAGGAMCWRRRR 255
EPGK+ PG + RG GP+ PP + AG G G G GA + R
Sbjct: 1003 EPGKQGAPGA----SGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDR 1058
Query: 256 AKPSESRHPG----PGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHY 311
+ PG PGS G G G G G + G G A G P P
Sbjct: 1059 GETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPA--GARGIQGPQGPRG 1116
Query: 312 EKVSGDYGHP 321
+K G+ G P
Sbjct: 1117 DK--GEAGEP 1124
Score = 37.0 bits (84), Expect = 0.025
Identities = 49/190 (25%), Positives = 58/190 (30%), Gaps = 32/190 (16%)
Query: 171 PRGGAVPRKPVSEMPMERDRGAAHSLEP----------GKENLPGD-----------PTS 209
P G + P M +RGAA P G E PG P
Sbjct: 736 PAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPG 795
Query: 210 NATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPG---- 265
A + G +G + PP AGA G G G G P PG
Sbjct: 796 PAGANGEKGEVGPPGPAGSAGARGA-----PGERGETGPPGPAGFAGPPGADGQPGAKGE 850
Query: 266 PGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGG--GAADPPFCPHYEKVSGDYGHPVY 323
G G+ G G G G G G+ G GA PP + +G G P
Sbjct: 851 QGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGS 910
Query: 324 IVQDGPPQSP 333
GPP P
Sbjct: 911 NGNPGPPGPP 920
Score = 36.2 bits (82), Expect = 0.043
Identities = 41/133 (30%), Positives = 52/133 (39%), Gaps = 13/133 (9%)
Query: 169 QSPRGGAVPRKPVSEMPMERDRGA-AHSLEPGKENLPGDP--TSNATSRGAEGPLPPPSM 225
Q P+G PR E +RG H G + LPG P + + + G GP P
Sbjct: 1109 QGPQG---PRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGP 1165
Query: 226 PAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPG-PGSFGRGGSLGLG----GG 280
P G +G G+ G G R R + + PG PG G G G G
Sbjct: 1166 PGPVGPSGKDGAN--GIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAF 1223
Query: 281 GGMGPREAEPGEL 293
G+GPRE P L
Sbjct: 1224 AGLGPREKGPDPL 1236
Score = 34.7 bits (78), Expect = 0.13
Identities = 51/181 (28%), Positives = 60/181 (33%), Gaps = 46/181 (25%)
Query: 169 QSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPG-----------------DPTSNA 211
Q PRG P P S P A S PG + +PG P
Sbjct: 389 QGPRGE--PGTPGSPGP------AGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPP 440
Query: 212 TSRGAEGPLPPPSM---PAVAGAAGGLALL-LLGVAGAGGAMCWRRRRAKPSESRHPG-- 265
+GA GPL P P +AG G G AG GA K PG
Sbjct: 441 GPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGV 500
Query: 266 -----PGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSGDYGH 320
PG G G+ G G G+ + PGE G G A P + +GD G
Sbjct: 501 GPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERG----PSGLAGP------KGANGDPGR 550
Query: 321 P 321
P
Sbjct: 551 P 551
Score = 33.9 bits (76), Expect = 0.21
Identities = 39/143 (27%), Positives = 47/143 (32%), Gaps = 29/143 (20%)
Query: 198 PGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAK 257
PG+ PG N G +G P P G +G L G GA G +
Sbjct: 506 PGERGAPG----NRGFPGQDGLAGPKGAPGERGPSG-----LAGPKGANGDP------GR 550
Query: 258 PSESRHPG-------PGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPH 310
P E PG PG G G +G G G R PG GA P
Sbjct: 551 PGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGP-------QGARGQPGVMG 603
Query: 311 YEKVSGDYGHPVYIVQDGPPQSP 333
+ G G P + G P +P
Sbjct: 604 FPGPKGANGEPGKAGEKGLPGAP 626
Score = 33.1 bits (74), Expect = 0.37
Identities = 43/149 (28%), Positives = 49/149 (32%), Gaps = 22/149 (14%)
Query: 197 EPGK---ENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRR 253
EPGK + LPG P G +G P AG AG G G G
Sbjct: 613 EPGKAGEKGLPGAPGLRGLP-GKDGETGAAGPPGPAGPAGERGEQ--GAPGPSGFQGLPG 669
Query: 254 RRAKPSESRHPG----PGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCP 309
P E PG PG G G +G G G PG G+ G P P
Sbjct: 670 PPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQ----GPRGLPGTP 725
Query: 310 HYEKVSGDYGHPVYIVQDGPP--QSPPNI 336
+ G G GPP Q PP +
Sbjct: 726 GTDGPKGASG------PAGPPGAQGPPGL 748
Score = 33.1 bits (74), Expect = 0.37
Identities = 47/192 (24%), Positives = 56/192 (29%), Gaps = 41/192 (21%)
Query: 169 QSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPG-----DPTSNATSRGAEGPLPPP 223
Q P G P+ P + RGA PG PG P + + G GP P
Sbjct: 866 QGPSGAPGPQGPTGVTGPKGARGAQGP--PGATGFPGAAGRVGPPGSNGNPGPPGPPGPS 923
Query: 224 SMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPG------------------ 265
GA G G G G + P E PG
Sbjct: 924 GKDGPKGARGDS-----GPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAG 978
Query: 266 -------PGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSGDY 318
PG G G GL G G ++ PG G G P P +G+
Sbjct: 979 QRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASG----DRGPPGPVGPPGLTGPAGEP 1034
Query: 319 GHPVYIVQDGPP 330
G DGPP
Sbjct: 1035 GREGSPGADGPP 1046
Score = 32.7 bits (73), Expect = 0.48
Identities = 36/125 (28%), Positives = 44/125 (35%), Gaps = 14/125 (11%)
Query: 198 PGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAK 257
PG++ PG P +RG G + P G G G G GA R K
Sbjct: 581 PGEDGRPGPPGPQG-ARGQPGVMGFPGPKGANGEPGKA-----GEKGLPGAPGLRGLPGK 634
Query: 258 PSESRHPGP-GSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSG 316
E+ GP G G G G G G + PG G GG D + V G
Sbjct: 635 DGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGD-------QGVPG 687
Query: 317 DYGHP 321
+ G P
Sbjct: 688 EAGAP 692
Score = 32.3 bits (72), Expect = 0.62
Identities = 45/169 (26%), Positives = 55/169 (32%), Gaps = 32/169 (18%)
Query: 171 PRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAG 230
P G P P + + DRG E G + P P+ A +RG +GP P AG
Sbjct: 1072 PPGSPGPAGPTGK---QGDRG-----EAGAQG-PMGPSGPAGARGIQGPQGPRGDKGEAG 1122
Query: 231 AAGGLALL-LLGVAGAGGAMCWRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAE 289
G L G G G PG G G G G G
Sbjct: 1123 EPGERGLKGHRGFTGLQGL-----------------PGPPGPSGDQGASGPAGPSGPRGP 1165
Query: 290 PGELGIALRGG-----GAADPPFCPHYEKVSGDYGHPVYIVQDGPPQSP 333
PG +G + + G G PP +G G P GPP P
Sbjct: 1166 PGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPP 1214
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 48.1 bits (113), Expect = 1e-05
Identities = 48/163 (29%), Positives = 58/163 (35%), Gaps = 14/163 (8%)
Query: 171 PRGGAVPRKPVSEMPMERDRG-AAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVA 229
P+G P+ P E DRG PG G+P + G GP PP P
Sbjct: 49 PKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTP----GNPGPPGPPGPPGPP 104
Query: 230 GAAGGLALLLLG--VAGAGGAMCWRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPRE 287
G G A + G AGGA + PG G G G G G
Sbjct: 105 GLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPG----- 159
Query: 288 AEPGELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGPP 330
EPGE G++ G PP P G+ G P + GPP
Sbjct: 160 -EPGEPGVS-GPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPP 200
Score = 42.7 bits (99), Expect = 5e-04
Identities = 49/173 (28%), Positives = 63/173 (36%), Gaps = 28/173 (16%)
Query: 168 GQSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPS--- 224
G++ G V + P ER A L+ G LPG P ++ +GA GP PP
Sbjct: 618 GEAGAPGLVGPRGERGFPGERGSPGAQGLQ-GPRGLPGTPGTDGP-KGASGPAGPPGAQG 675
Query: 225 ------MPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSES---------RHPGP-GS 268
MP GAAG + G G G + + P + PGP G+
Sbjct: 676 PPGLQGMPGERGAAG-----IAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGA 730
Query: 269 FGRGGSLGLGGGGGMGPREAEPGELGIALRGG--GAADPPFCPHYEKVSGDYG 319
G G +G G G PGE G G G A PP G+ G
Sbjct: 731 NGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQG 783
Score = 42.0 bits (97), Expect = 8e-04
Identities = 42/135 (31%), Positives = 49/135 (36%), Gaps = 12/135 (8%)
Query: 177 PRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLA 236
PR P D G A +PGK G P +GA G P +P V G G
Sbjct: 172 PRGPPGPPGKPGDDGEAG--KPGKAGERGPPGP----QGARGFPGTPGLPGVKGHRGYPG 225
Query: 237 LLLLGVAGAGGAMCWRRRRAKPSESRHPGP----GSFGRGGSLGLGGGGGMGPREAEPGE 292
L G G GA + P E+ PGP G G G G G G + +PG
Sbjct: 226 LD--GAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGP 283
Query: 293 LGIALRGGGAADPPF 307
G G A P F
Sbjct: 284 AGPPGPVGPAGGPGF 298
Score = 40.0 bits (92), Expect = 0.003
Identities = 37/123 (30%), Positives = 43/123 (34%), Gaps = 16/123 (13%)
Query: 183 EMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGV 242
E + D GA P P PT +GA G PP GAAG +G
Sbjct: 784 EAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAG-----RVGP 838
Query: 243 AGAGGAMCWRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGA 302
G+ G P PGP G+ G G G G R EPG G A G
Sbjct: 839 PGSNG---------NPGPPGPPGPS--GKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEK 887
Query: 303 ADP 305
+P
Sbjct: 888 GEP 890
Score = 39.3 bits (90), Expect = 0.005
Identities = 44/152 (28%), Positives = 54/152 (35%), Gaps = 35/152 (23%)
Query: 198 PGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAK 257
PG + G P N G+ GP+ P +P G G AGA GA R +
Sbjct: 236 PGVKGESGSPGEN----GSPGPMGPRGLPGERGRTGP--------AGAAGA---RGNDGQ 280
Query: 258 PSESRHPGP-------------GSFGRGGSLGL-GGGGGMGPREAEPGELGIALRGGGAA 303
P + PGP G+ G G G G G GPR EPG G G +
Sbjct: 281 PGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPR-GEPGTPGSPGPAGASG 339
Query: 304 DP-----PFCPHYEKVSGDYGHPVYIVQDGPP 330
+P P G G P + GPP
Sbjct: 340 NPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPP 371
Score = 37.7 bits (86), Expect = 0.015
Identities = 40/130 (30%), Positives = 49/130 (37%), Gaps = 13/130 (10%)
Query: 197 EPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALL-LLGVAGAGGAMCWRRRR 255
EPGK+ PG + RG GP+ PP + AG G G G GA + R
Sbjct: 934 EPGKQGAPGA----SGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDR 989
Query: 256 AKPSESRHPG----PGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHY 311
+ PG PGS G G G G G + G G A G P P
Sbjct: 990 GETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPA--GARGIQGPQGPRG 1047
Query: 312 EKVSGDYGHP 321
+K G+ G P
Sbjct: 1048 DK--GEAGEP 1055
Score = 37.0 bits (84), Expect = 0.025
Identities = 49/190 (25%), Positives = 58/190 (30%), Gaps = 32/190 (16%)
Query: 171 PRGGAVPRKPVSEMPMERDRGAAHSLEP----------GKENLPGD-----------PTS 209
P G + P M +RGAA P G E PG P
Sbjct: 667 PAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPG 726
Query: 210 NATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPG---- 265
A + G +G + PP AGA G G G G P PG
Sbjct: 727 PAGANGEKGEVGPPGPAGSAGARGA-----PGERGETGPPGPAGFAGPPGADGQPGAKGE 781
Query: 266 PGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGG--GAADPPFCPHYEKVSGDYGHPVY 323
G G+ G G G G G G+ G GA PP + +G G P
Sbjct: 782 QGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGS 841
Query: 324 IVQDGPPQSP 333
GPP P
Sbjct: 842 NGNPGPPGPP 851
Score = 36.2 bits (82), Expect = 0.043
Identities = 41/133 (30%), Positives = 52/133 (39%), Gaps = 13/133 (9%)
Query: 169 QSPRGGAVPRKPVSEMPMERDRGA-AHSLEPGKENLPGDP--TSNATSRGAEGPLPPPSM 225
Q P+G PR E +RG H G + LPG P + + + G GP P
Sbjct: 1040 QGPQG---PRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGP 1096
Query: 226 PAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPG-PGSFGRGGSLGLG----GG 280
P G +G G+ G G R R + + PG PG G G G G
Sbjct: 1097 PGPVGPSGKDGAN--GIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAF 1154
Query: 281 GGMGPREAEPGEL 293
G+GPRE P L
Sbjct: 1155 AGLGPREKGPDPL 1167
Score = 34.7 bits (78), Expect = 0.13
Identities = 51/181 (28%), Positives = 60/181 (33%), Gaps = 46/181 (25%)
Query: 169 QSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPG-----------------DPTSNA 211
Q PRG P P S P A S PG + +PG P
Sbjct: 320 QGPRGE--PGTPGSPGP------AGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPP 371
Query: 212 TSRGAEGPLPPPSM---PAVAGAAGGLALL-LLGVAGAGGAMCWRRRRAKPSESRHPG-- 265
+GA GPL P P +AG G G AG GA K PG
Sbjct: 372 GPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGV 431
Query: 266 -----PGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSGDYGH 320
PG G G+ G G G+ + PGE G G A P + +GD G
Sbjct: 432 GPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERG----PSGLAGP------KGANGDPGR 481
Query: 321 P 321
P
Sbjct: 482 P 482
Score = 33.9 bits (76), Expect = 0.21
Identities = 39/143 (27%), Positives = 47/143 (32%), Gaps = 29/143 (20%)
Query: 198 PGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAK 257
PG+ PG N G +G P P G +G L G GA G +
Sbjct: 437 PGERGAPG----NRGFPGQDGLAGPKGAPGERGPSG-----LAGPKGANGDP------GR 481
Query: 258 PSESRHPG-------PGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPH 310
P E PG PG G G +G G G R PG GA P
Sbjct: 482 PGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGP-------QGARGQPGVMG 534
Query: 311 YEKVSGDYGHPVYIVQDGPPQSP 333
+ G G P + G P +P
Sbjct: 535 FPGPKGANGEPGKAGEKGLPGAP 557
Score = 33.1 bits (74), Expect = 0.37
Identities = 43/149 (28%), Positives = 49/149 (32%), Gaps = 22/149 (14%)
Query: 197 EPGK---ENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRR 253
EPGK + LPG P G +G P AG AG G G G
Sbjct: 544 EPGKAGEKGLPGAPGLRGLP-GKDGETGAAGPPGPAGPAGERGEQ--GAPGPSGFQGLPG 600
Query: 254 RRAKPSESRHPG----PGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCP 309
P E PG PG G G +G G G PG G+ G P P
Sbjct: 601 PPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQ----GPRGLPGTP 656
Query: 310 HYEKVSGDYGHPVYIVQDGPP--QSPPNI 336
+ G G GPP Q PP +
Sbjct: 657 GTDGPKGASG------PAGPPGAQGPPGL 679
Score = 33.1 bits (74), Expect = 0.37
Identities = 47/192 (24%), Positives = 56/192 (29%), Gaps = 41/192 (21%)
Query: 169 QSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPG-----DPTSNATSRGAEGPLPPP 223
Q P G P+ P + RGA PG PG P + + G GP P
Sbjct: 797 QGPSGAPGPQGPTGVTGPKGARGAQGP--PGATGFPGAAGRVGPPGSNGNPGPPGPPGPS 854
Query: 224 SMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPG------------------ 265
GA G G G G + P E PG
Sbjct: 855 GKDGPKGARGDS-----GPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAG 909
Query: 266 -------PGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSGDY 318
PG G G GL G G ++ PG G G P P +G+
Sbjct: 910 QRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASG----DRGPPGPVGPPGLTGPAGEP 965
Query: 319 GHPVYIVQDGPP 330
G DGPP
Sbjct: 966 GREGSPGADGPP 977
Score = 32.7 bits (73), Expect = 0.48
Identities = 36/125 (28%), Positives = 44/125 (35%), Gaps = 14/125 (11%)
Query: 198 PGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAK 257
PG++ PG P +RG G + P G G G G GA R K
Sbjct: 512 PGEDGRPGPPGPQG-ARGQPGVMGFPGPKGANGEPGKA-----GEKGLPGAPGLRGLPGK 565
Query: 258 PSESRHPGP-GSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSG 316
E+ GP G G G G G G + PG G GG D + V G
Sbjct: 566 DGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGD-------QGVPG 618
Query: 317 DYGHP 321
+ G P
Sbjct: 619 EAGAP 623
Score = 32.3 bits (72), Expect = 0.62
Identities = 45/169 (26%), Positives = 55/169 (32%), Gaps = 32/169 (18%)
Query: 171 PRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAG 230
P G P P + + DRG E G + P P+ A +RG +GP P AG
Sbjct: 1003 PPGSPGPAGPTGK---QGDRG-----EAGAQG-PMGPSGPAGARGIQGPQGPRGDKGEAG 1053
Query: 231 AAGGLALL-LLGVAGAGGAMCWRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAE 289
G L G G G PG G G G G G
Sbjct: 1054 EPGERGLKGHRGFTGLQGL-----------------PGPPGPSGDQGASGPAGPSGPRGP 1096
Query: 290 PGELGIALRGG-----GAADPPFCPHYEKVSGDYGHPVYIVQDGPPQSP 333
PG +G + + G G PP +G G P GPP P
Sbjct: 1097 PGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPP 1145
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 47.0 bits (110), Expect = 2e-05
Identities = 49/149 (32%), Positives = 64/149 (42%), Gaps = 27/149 (18%)
Query: 197 EPGKENLPGDPTS-------NATSR-GAEGPLPPPSMPAVAGAAGGLALL----LLGVAG 244
+PG + L G P S AT + G GP+ PP +P + G AG L+G+ G
Sbjct: 1275 KPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIG 1334
Query: 245 AGGAMCWRRRRAKPSESRHPGP-GSFGRGGSLGLGGGGGMGPREAEPGELGIA-LRGGGA 302
G + + + PGP GS G+ G +G+ G G PG G A +G
Sbjct: 1335 PPG------EQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKG 1388
Query: 303 ADPPFCPHYEK-VSGDYGHPVYIVQDGPP 330
A P P EK V G GHP GPP
Sbjct: 1389 ATGPGGPKGEKGVQGPPGHP------GPP 1411
Score = 39.3 bits (90), Expect = 0.005
Identities = 47/160 (29%), Positives = 56/160 (35%), Gaps = 29/160 (18%)
Query: 198 PGKENLPGDPTSNATS--RGAEGPLPPPSMPAVAGAAGGLALL----LLGVAGAGGAMCW 251
PGK+ LPG P +G GP PP + GAAG + G G G
Sbjct: 811 PGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGL 870
Query: 252 RRRRAKPSESRHPGP-GSFGRGGSLGLGG----------GGGMGPREAE----------- 289
K PGP G+ G+ G GL G GG G + E
Sbjct: 871 PGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGS 930
Query: 290 PGELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGP 329
PGE G A GG PP P + G G + GP
Sbjct: 931 PGERGAA-GSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGP 969
Score = 38.1 bits (87), Expect = 0.011
Identities = 35/112 (31%), Positives = 42/112 (37%), Gaps = 6/112 (5%)
Query: 199 GKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAG-GLALLLLGVAGAGGAMCWRRRRAK 257
G + LPG P+ G GP+ PP P G AG A G G G + + +
Sbjct: 1070 GLQGLPG-PSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGE 1128
Query: 258 PSESRHPG----PGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADP 305
P ES PG PG G G G G G PG G G +P
Sbjct: 1129 PGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNP 1180
Score = 37.7 bits (86), Expect = 0.015
Identities = 44/161 (27%), Positives = 57/161 (35%), Gaps = 16/161 (9%)
Query: 189 DRGAAHSLEPGKENLPGDPTSNATSRGAEGP---------LPPPSMPAVAGAAGGLALL- 238
++G + P P P A GA+GP L PP G +G +
Sbjct: 1080 EKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQG 1139
Query: 239 LLGVAGAGGAMCWRRRRAKPSESRHPGP-GSFGRGGSLGLGGGGGMGPREAEPGELGIAL 297
GV G G + +P E PGP G G G G G G PGE G
Sbjct: 1140 EPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRG 1199
Query: 298 RGGGAAD-----PPFCPHYEKVSGDYGHPVYIVQDGPPQSP 333
+ G D P P +G+ G P + + GP SP
Sbjct: 1200 QDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSP 1240
Score = 35.4 bits (80), Expect = 0.074
Identities = 44/146 (30%), Positives = 57/146 (39%), Gaps = 37/146 (25%)
Query: 197 EPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRA 256
E G LPG+ + RG GP PP +P G G + G G G++
Sbjct: 510 EIGPRGLPGE----SGPRGLLGPKGPPGIPGPPGVRG-----MDGPQGPKGSL------- 553
Query: 257 KPSESRHPG-PGSFGRGGSLGL-GGGGGMGPR-----EAEPGELGIALRGGGAADPPFCP 309
PG PG G G+ GL G G +GP + +PG G+ G+ PP P
Sbjct: 554 --GPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMP----GSDGPPGHP 607
Query: 310 HYEKVSGDYGHPVYIVQDGP--PQSP 333
E G G+ GP PQ P
Sbjct: 608 GKEGPPGTKGN------QGPSGPQGP 627
Score = 33.1 bits (74), Expect = 0.37
Identities = 43/146 (29%), Positives = 53/146 (36%), Gaps = 16/146 (10%)
Query: 169 QSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAV 228
Q P G P P + D+G +PG++ G+ + G GP+ P P
Sbjct: 979 QGPVGLPGPAGPPGVAGEDGDKGEVG--DPGQKGTKGNKGEHGPP-GPPGPIGPVGQPGA 1035
Query: 229 AGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGP----GSFGRGGSLG-LGGGGGM 283
AGA G G G G + + PGP G G G G G G M
Sbjct: 1036 AGADGE-----PGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPM 1090
Query: 284 GPREAEPGELGIALRGGGAADPPFCP 309
GP PG G A G AD P P
Sbjct: 1091 GP-PGPPGPRGPA--GPNGADGPQGP 1113
Score = 32.7 bits (73), Expect = 0.48
Identities = 50/190 (26%), Positives = 67/190 (35%), Gaps = 29/190 (15%)
Query: 168 GQSPRGGAVPRKPVSEMPMERDRGAAHSLEP----------------GKENLPGD--PTS 209
G +G P P +RGAA S P G++ +PG+ P
Sbjct: 912 GPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIG 971
Query: 210 NATSRGAEGP--LPPPS-MPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGP 266
G +GP LP P+ P VAG G G G G + + + PGP
Sbjct: 972 PTGRDGVQGPVGLPGPAGPPGVAGEDGD-----KGEVGDPGQKGTKGNKGEHGPPGPPGP 1026
Query: 267 -GSFGRGGSLGLGG-GGGMGPREAEPGELGIALRG-GGAADPPFCPHYEKVSGDYGHPVY 323
G G+ G+ G G G GP+ + RG G P SG+ G
Sbjct: 1027 IGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGD 1086
Query: 324 IVQDGPPQSP 333
+ GPP P
Sbjct: 1087 VGPMGPPGPP 1096
Score = 32.3 bits (72), Expect = 0.62
Identities = 35/127 (27%), Positives = 46/127 (36%), Gaps = 10/127 (7%)
Query: 171 PRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSR--GAEGPLPPPSMPAV 228
PRG A P ++ P G + PG++ PG+ S G +GP
Sbjct: 1098 PRGPAGPNG--ADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGE 1155
Query: 229 AGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPG-PGSFGRGGSLGLGGGGGMGPRE 287
+G G G G G + P PG PG G GG G G G +
Sbjct: 1156 SGQPGEP-----GPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGED 1210
Query: 288 AEPGELG 294
EPG+ G
Sbjct: 1211 GEPGQPG 1217
Score = 32.0 bits (71), Expect = 0.82
Identities = 55/200 (27%), Positives = 67/200 (33%), Gaps = 42/200 (21%)
Query: 159 RGMKVLLRVGQSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGD--PTSNATSRGA 216
+G +L G G P P + +G PG PG+ P A G+
Sbjct: 299 KGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQG-----NPGPVGDPGERGPPGRAGLPGS 353
Query: 217 EGPLPPPS----MPAVAGAAGG----------------LALLLLGVAGAGGAMCWRRRRA 256
+G PP +P G+ GG L L + G G M + R
Sbjct: 354 DGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGR-- 411
Query: 257 KPSESRHPG-PGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGG--GAADPPFCPHYEK 313
P PG PG G G LG G G PG+ G R G GA P P
Sbjct: 412 -PGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDP---G 467
Query: 314 VSGDYGHPVYIVQDGPPQSP 333
V GD G DG P P
Sbjct: 468 VKGDRGF------DGLPGLP 481
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 47.0 bits (110), Expect = 2e-05
Identities = 49/149 (32%), Positives = 64/149 (42%), Gaps = 27/149 (18%)
Query: 197 EPGKENLPGDPTS-------NATSR-GAEGPLPPPSMPAVAGAAGGLALL----LLGVAG 244
+PG + L G P S AT + G GP+ PP +P + G AG L+G+ G
Sbjct: 1254 KPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIG 1313
Query: 245 AGGAMCWRRRRAKPSESRHPGP-GSFGRGGSLGLGGGGGMGPREAEPGELGIA-LRGGGA 302
G + + + PGP GS G+ G +G+ G G PG G A +G
Sbjct: 1314 PPG------EQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKG 1367
Query: 303 ADPPFCPHYEK-VSGDYGHPVYIVQDGPP 330
A P P EK V G GHP GPP
Sbjct: 1368 ATGPGGPKGEKGVQGPPGHP------GPP 1390
Score = 39.3 bits (90), Expect = 0.005
Identities = 47/160 (29%), Positives = 56/160 (35%), Gaps = 29/160 (18%)
Query: 198 PGKENLPGDPTSNATS--RGAEGPLPPPSMPAVAGAAGGLALL----LLGVAGAGGAMCW 251
PGK+ LPG P +G GP PP + GAAG + G G G
Sbjct: 790 PGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGL 849
Query: 252 RRRRAKPSESRHPGP-GSFGRGGSLGLGG----------GGGMGPREAE----------- 289
K PGP G+ G+ G GL G GG G + E
Sbjct: 850 PGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGS 909
Query: 290 PGELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGP 329
PGE G A GG PP P + G G + GP
Sbjct: 910 PGERGAA-GSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGP 948
Score = 38.1 bits (87), Expect = 0.011
Identities = 35/112 (31%), Positives = 42/112 (37%), Gaps = 6/112 (5%)
Query: 199 GKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAG-GLALLLLGVAGAGGAMCWRRRRAK 257
G + LPG P+ G GP+ PP P G AG A G G G + + +
Sbjct: 1049 GLQGLPG-PSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGE 1107
Query: 258 PSESRHPG----PGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADP 305
P ES PG PG G G G G G PG G G +P
Sbjct: 1108 PGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNP 1159
Score = 37.7 bits (86), Expect = 0.015
Identities = 44/161 (27%), Positives = 57/161 (35%), Gaps = 16/161 (9%)
Query: 189 DRGAAHSLEPGKENLPGDPTSNATSRGAEGP---------LPPPSMPAVAGAAGGLALL- 238
++G + P P P A GA+GP L PP G +G +
Sbjct: 1059 EKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQG 1118
Query: 239 LLGVAGAGGAMCWRRRRAKPSESRHPGP-GSFGRGGSLGLGGGGGMGPREAEPGELGIAL 297
GV G G + +P E PGP G G G G G G PGE G
Sbjct: 1119 EPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRG 1178
Query: 298 RGGGAAD-----PPFCPHYEKVSGDYGHPVYIVQDGPPQSP 333
+ G D P P +G+ G P + + GP SP
Sbjct: 1179 QDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSP 1219
Score = 35.4 bits (80), Expect = 0.074
Identities = 44/146 (30%), Positives = 57/146 (39%), Gaps = 37/146 (25%)
Query: 197 EPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRA 256
E G LPG+ + RG GP PP +P G G + G G G++
Sbjct: 489 EIGPRGLPGE----SGPRGLLGPKGPPGIPGPPGVRG-----MDGPQGPKGSL------- 532
Query: 257 KPSESRHPG-PGSFGRGGSLGL-GGGGGMGPR-----EAEPGELGIALRGGGAADPPFCP 309
PG PG G G+ GL G G +GP + +PG G+ G+ PP P
Sbjct: 533 --GPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMP----GSDGPPGHP 586
Query: 310 HYEKVSGDYGHPVYIVQDGP--PQSP 333
E G G+ GP PQ P
Sbjct: 587 GKEGPPGTKGN------QGPSGPQGP 606
Score = 33.1 bits (74), Expect = 0.37
Identities = 43/146 (29%), Positives = 53/146 (36%), Gaps = 16/146 (10%)
Query: 169 QSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAV 228
Q P G P P + D+G +PG++ G+ + G GP+ P P
Sbjct: 958 QGPVGLPGPAGPPGVAGEDGDKGEVG--DPGQKGTKGNKGEHGPP-GPPGPIGPVGQPGA 1014
Query: 229 AGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGP----GSFGRGGSLG-LGGGGGM 283
AGA G G G G + + PGP G G G G G G M
Sbjct: 1015 AGADGE-----PGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPM 1069
Query: 284 GPREAEPGELGIALRGGGAADPPFCP 309
GP PG G A G AD P P
Sbjct: 1070 GP-PGPPGPRGPA--GPNGADGPQGP 1092
Score = 32.7 bits (73), Expect = 0.48
Identities = 50/190 (26%), Positives = 67/190 (35%), Gaps = 29/190 (15%)
Query: 168 GQSPRGGAVPRKPVSEMPMERDRGAAHSLEP----------------GKENLPGD--PTS 209
G +G P P +RGAA S P G++ +PG+ P
Sbjct: 891 GPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIG 950
Query: 210 NATSRGAEGP--LPPPS-MPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGP 266
G +GP LP P+ P VAG G G G G + + + PGP
Sbjct: 951 PTGRDGVQGPVGLPGPAGPPGVAGEDGD-----KGEVGDPGQKGTKGNKGEHGPPGPPGP 1005
Query: 267 -GSFGRGGSLGLGG-GGGMGPREAEPGELGIALRG-GGAADPPFCPHYEKVSGDYGHPVY 323
G G+ G+ G G G GP+ + RG G P SG+ G
Sbjct: 1006 IGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGD 1065
Query: 324 IVQDGPPQSP 333
+ GPP P
Sbjct: 1066 VGPMGPPGPP 1075
Score = 32.3 bits (72), Expect = 0.62
Identities = 35/127 (27%), Positives = 46/127 (36%), Gaps = 10/127 (7%)
Query: 171 PRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSR--GAEGPLPPPSMPAV 228
PRG A P ++ P G + PG++ PG+ S G +GP
Sbjct: 1077 PRGPAGPNG--ADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGE 1134
Query: 229 AGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPG-PGSFGRGGSLGLGGGGGMGPRE 287
+G G G G G + P PG PG G GG G G G +
Sbjct: 1135 SGQPGEP-----GPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGED 1189
Query: 288 AEPGELG 294
EPG+ G
Sbjct: 1190 GEPGQPG 1196
Score = 32.0 bits (71), Expect = 0.82
Identities = 55/200 (27%), Positives = 67/200 (33%), Gaps = 42/200 (21%)
Query: 159 RGMKVLLRVGQSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGD--PTSNATSRGA 216
+G +L G G P P + +G PG PG+ P A G+
Sbjct: 278 KGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQG-----NPGPVGDPGERGPPGRAGLPGS 332
Query: 217 EGPLPPPS----MPAVAGAAGG----------------LALLLLGVAGAGGAMCWRRRRA 256
+G PP +P G+ GG L L + G G M + R
Sbjct: 333 DGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGR-- 390
Query: 257 KPSESRHPG-PGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGG--GAADPPFCPHYEK 313
P PG PG G G LG G G PG+ G R G GA P P
Sbjct: 391 -PGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDP---G 446
Query: 314 VSGDYGHPVYIVQDGPPQSP 333
V GD G DG P P
Sbjct: 447 VKGDRGF------DGLPGLP 460
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 47.0 bits (110), Expect = 2e-05
Identities = 49/149 (32%), Positives = 64/149 (42%), Gaps = 27/149 (18%)
Query: 197 EPGKENLPGDPTS-------NATSR-GAEGPLPPPSMPAVAGAAGGLALL----LLGVAG 244
+PG + L G P S AT + G GP+ PP +P + G AG L+G+ G
Sbjct: 1361 KPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIG 1420
Query: 245 AGGAMCWRRRRAKPSESRHPGP-GSFGRGGSLGLGGGGGMGPREAEPGELGIA-LRGGGA 302
G + + + PGP GS G+ G +G+ G G PG G A +G
Sbjct: 1421 PPG------EQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKG 1474
Query: 303 ADPPFCPHYEK-VSGDYGHPVYIVQDGPP 330
A P P EK V G GHP GPP
Sbjct: 1475 ATGPGGPKGEKGVQGPPGHP------GPP 1497
Score = 39.3 bits (90), Expect = 0.005
Identities = 47/160 (29%), Positives = 56/160 (35%), Gaps = 29/160 (18%)
Query: 198 PGKENLPGDPTSNATS--RGAEGPLPPPSMPAVAGAAGGLALL----LLGVAGAGGAMCW 251
PGK+ LPG P +G GP PP + GAAG + G G G
Sbjct: 897 PGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGL 956
Query: 252 RRRRAKPSESRHPGP-GSFGRGGSLGLGG----------GGGMGPREAE----------- 289
K PGP G+ G+ G GL G GG G + E
Sbjct: 957 PGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGS 1016
Query: 290 PGELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGP 329
PGE G A GG PP P + G G + GP
Sbjct: 1017 PGERGAA-GSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGP 1055
Score = 38.1 bits (87), Expect = 0.011
Identities = 35/112 (31%), Positives = 42/112 (37%), Gaps = 6/112 (5%)
Query: 199 GKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAG-GLALLLLGVAGAGGAMCWRRRRAK 257
G + LPG P+ G GP+ PP P G AG A G G G + + +
Sbjct: 1156 GLQGLPG-PSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGE 1214
Query: 258 PSESRHPG----PGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADP 305
P ES PG PG G G G G G PG G G +P
Sbjct: 1215 PGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNP 1266
Score = 37.7 bits (86), Expect = 0.015
Identities = 44/161 (27%), Positives = 57/161 (35%), Gaps = 16/161 (9%)
Query: 189 DRGAAHSLEPGKENLPGDPTSNATSRGAEGP---------LPPPSMPAVAGAAGGLALL- 238
++G + P P P A GA+GP L PP G +G +
Sbjct: 1166 EKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQG 1225
Query: 239 LLGVAGAGGAMCWRRRRAKPSESRHPGP-GSFGRGGSLGLGGGGGMGPREAEPGELGIAL 297
GV G G + +P E PGP G G G G G G PGE G
Sbjct: 1226 EPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRG 1285
Query: 298 RGGGAAD-----PPFCPHYEKVSGDYGHPVYIVQDGPPQSP 333
+ G D P P +G+ G P + + GP SP
Sbjct: 1286 QDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSP 1326
Score = 35.4 bits (80), Expect = 0.074
Identities = 44/146 (30%), Positives = 57/146 (39%), Gaps = 37/146 (25%)
Query: 197 EPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRA 256
E G LPG+ + RG GP PP +P G G + G G G++
Sbjct: 596 EIGPRGLPGE----SGPRGLLGPKGPPGIPGPPGVRG-----MDGPQGPKGSL------- 639
Query: 257 KPSESRHPG-PGSFGRGGSLGL-GGGGGMGPR-----EAEPGELGIALRGGGAADPPFCP 309
PG PG G G+ GL G G +GP + +PG G+ G+ PP P
Sbjct: 640 --GPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMP----GSDGPPGHP 693
Query: 310 HYEKVSGDYGHPVYIVQDGP--PQSP 333
E G G+ GP PQ P
Sbjct: 694 GKEGPPGTKGN------QGPSGPQGP 713
Score = 33.1 bits (74), Expect = 0.37
Identities = 43/146 (29%), Positives = 53/146 (36%), Gaps = 16/146 (10%)
Query: 169 QSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAV 228
Q P G P P + D+G +PG++ G+ + G GP+ P P
Sbjct: 1065 QGPVGLPGPAGPPGVAGEDGDKGEVG--DPGQKGTKGNKGEHGPP-GPPGPIGPVGQPGA 1121
Query: 229 AGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGP----GSFGRGGSLG-LGGGGGM 283
AGA G G G G + + PGP G G G G G G M
Sbjct: 1122 AGADGE-----PGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPM 1176
Query: 284 GPREAEPGELGIALRGGGAADPPFCP 309
GP PG G A G AD P P
Sbjct: 1177 GP-PGPPGPRGPA--GPNGADGPQGP 1199
Score = 32.7 bits (73), Expect = 0.48
Identities = 60/220 (27%), Positives = 73/220 (33%), Gaps = 46/220 (20%)
Query: 139 ATSDGTREGLESLQGGVCLTRGMKVLLRVGQSPRGGAVPRKPVSEMPMERDRGAAHSLEP 198
A S G L+G +G +L G G P P + +G P
Sbjct: 369 AHSGAAAHGPRGLKG----EKGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQG-----NP 419
Query: 199 GKENLPGD--PTSNATSRGAEGPLPPPS----MPAVAGAAGG----------------LA 236
G PG+ P A G++G PP +P G+ GG L
Sbjct: 420 GPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQ 479
Query: 237 LLLLGVAGAGGAMCWRRRRAKPSESRHPG-PGSFGRGGSLGLGGGGGMGPREAEPGELGI 295
L + G G M + R P PG PG G G LG G G PG+ G
Sbjct: 480 QARLALRGPPGPMGYTGR---PGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGR 536
Query: 296 ALRGG--GAADPPFCPHYEKVSGDYGHPVYIVQDGPPQSP 333
R G GA P P V GD G DG P P
Sbjct: 537 RGRAGADGARGMPGDP---GVKGDRGF------DGLPGLP 567
Score = 32.7 bits (73), Expect = 0.48
Identities = 50/190 (26%), Positives = 67/190 (35%), Gaps = 29/190 (15%)
Query: 168 GQSPRGGAVPRKPVSEMPMERDRGAAHSLEP----------------GKENLPGD--PTS 209
G +G P P +RGAA S P G++ +PG+ P
Sbjct: 998 GPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIG 1057
Query: 210 NATSRGAEGP--LPPPS-MPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGP 266
G +GP LP P+ P VAG G G G G + + + PGP
Sbjct: 1058 PTGRDGVQGPVGLPGPAGPPGVAGEDGD-----KGEVGDPGQKGTKGNKGEHGPPGPPGP 1112
Query: 267 -GSFGRGGSLGLGG-GGGMGPREAEPGELGIALRG-GGAADPPFCPHYEKVSGDYGHPVY 323
G G+ G+ G G G GP+ + RG G P SG+ G
Sbjct: 1113 IGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGD 1172
Query: 324 IVQDGPPQSP 333
+ GPP P
Sbjct: 1173 VGPMGPPGPP 1182
Score = 32.3 bits (72), Expect = 0.62
Identities = 35/127 (27%), Positives = 46/127 (36%), Gaps = 10/127 (7%)
Query: 171 PRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSR--GAEGPLPPPSMPAV 228
PRG A P ++ P G + PG++ PG+ S G +GP
Sbjct: 1184 PRGPAGPNG--ADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGE 1241
Query: 229 AGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPG-PGSFGRGGSLGLGGGGGMGPRE 287
+G G G G G + P PG PG G GG G G G +
Sbjct: 1242 SGQPGEP-----GPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGED 1296
Query: 288 AEPGELG 294
EPG+ G
Sbjct: 1297 GEPGQPG 1303
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 45.4 bits (106), Expect = 7e-05
Identities = 44/131 (33%), Positives = 52/131 (39%), Gaps = 25/131 (19%)
Query: 198 PGKENLPGDPTSNATSRGAEGPLPPPS--------MPAVAGAAGGLALLLLGVAGAGGAM 249
PG LPG P + ++G G PP MP + G G G AG G +
Sbjct: 283 PGAAGLPG-PQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDR-----GPAGVPGLL 336
Query: 250 CWRRRRAKPSESRHPGP-GSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFC 308
R +P E PG G G GG GL G G+ R PG G A GG PP
Sbjct: 337 ---GDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGG----PPGV 389
Query: 309 PHYEKVSGDYG 319
P + GD G
Sbjct: 390 P---GIRGDQG 397
Score = 39.7 bits (91), Expect = 0.004
Identities = 57/191 (29%), Positives = 69/191 (36%), Gaps = 30/191 (15%)
Query: 163 VLLRVGQSPR-------GGAVPRKPVSEM-PMERD-------RGAAHSLEPGKENLPGDP 207
++L +G PR GGA PV + PM++ G LE LP D
Sbjct: 16 LVLVLGCGPRASSGGGAGGAAGYAPVKYIQPMQKGPVGPPFREGKGQYLEMPLPLLPMDL 75
Query: 208 TSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPG-- 265
G GP PP P G G L G G G + R K PG
Sbjct: 76 KGEPGPPGKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGF-SRMGKAGPPGLPGKV 134
Query: 266 --PGSFGRGGSLGLGGGGGM-GP--REAEPGELGIALRG-GGAADPPFCPHYEKVSGDYG 319
PG G G G+ G G+ GP PG GI + G GA P P ++ G G
Sbjct: 135 GPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQG 194
Query: 320 HPVYIVQDGPP 330
P GPP
Sbjct: 195 EP------GPP 199
Score = 38.5 bits (88), Expect = 0.009
Identities = 40/139 (28%), Positives = 51/139 (36%), Gaps = 25/139 (17%)
Query: 197 EPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRA 256
+PG + +PG P +G GP P P G G + G+ GA G +
Sbjct: 174 KPGAQGVPGPPGF----QGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPG------QGG 223
Query: 257 KPSESRHPGPGSFGRGGSLGLGGGGG----------MGPREAEPGELG----IALRGGGA 302
P PGP G+ G GL G G GPR EPG +G + G G
Sbjct: 224 APGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPR-GEPGAVGPKGPPGVDGVGV 282
Query: 303 ADPPFCPHYEKVSGDYGHP 321
P + SG G P
Sbjct: 283 PGAAGLPGPQGPSGAKGEP 301
Score = 35.0 bits (79), Expect = 0.096
Identities = 45/168 (26%), Positives = 57/168 (33%), Gaps = 46/168 (27%)
Query: 198 PGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAK 257
P E PG P RG +GP P V G G+ GA G + +
Sbjct: 377 PKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGER--------GLPGAHGPPGPTGPKGE 428
Query: 258 PSESRHPG----PGSFGRGGSLGL----------------GGGGGMGPR-----EAEPGE 292
P + PG G+ G+ G LGL G G +GP+ + EPG
Sbjct: 429 PGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGL 488
Query: 293 LGIALRG-------GGAADPPFCPHYEKVSGDYGHPVYIVQDGPPQSP 333
G G G PP P ++G G P GPP P
Sbjct: 489 PGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPGPP------GPPGPP 530
Score = 35.0 bits (79), Expect = 0.096
Identities = 43/142 (30%), Positives = 53/142 (37%), Gaps = 17/142 (11%)
Query: 165 LRVGQSPRGGAVPRKPVSEMPMERDRGAAHSL--------EPGKENLPGDPTSNATSRGA 216
+R Q P G A KP +P ER AH EPG PG P A + G
Sbjct: 392 IRGDQGPSGLA--GKP--GVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGP-GVAGALGQ 446
Query: 217 EGPLPPPSMPAVAGAAGGLALL----LLGVAGAGGAMCWRRRRAKPSESRHPGPGSFGRG 272
+G L P P + G +G L +G G G P E R PG+ G
Sbjct: 447 KGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPT 506
Query: 273 GSLGLGGGGGMGPREAEPGELG 294
G G+ G G+ PG G
Sbjct: 507 GPPGVPGSPGITGPPGPPGPPG 528
Score = 33.1 bits (74), Expect = 0.37
Identities = 43/156 (27%), Positives = 51/156 (32%), Gaps = 10/156 (6%)
Query: 180 PVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSR--GAEGP--LPPPSMPAVAGAAGGL 235
P E DRG G+ LPG P G GP L P + + GA G
Sbjct: 192 PQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDK 251
Query: 236 ALLLLGVAGAGGAMCWRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELG- 294
G +G G R PG G G+ GL G G + EPG G
Sbjct: 252 -----GESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGP 306
Query: 295 IALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGPP 330
L G P P + G G P + G P
Sbjct: 307 PGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEP 342
Score = 32.3 bits (72), Expect = 0.62
Identities = 38/133 (28%), Positives = 47/133 (35%), Gaps = 16/133 (12%)
Query: 197 EPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRA 256
+PG PG SR G PP +P G G G+ G G + R
Sbjct: 104 KPGLHGQPGPAGPPGFSR--MGKAGPPGLPGKVGPPGQP-----GLRGEPGIRGDQGLRG 156
Query: 257 KPSESRHPGPGSF---GRGGSLGLGGGGGM----GPREAEPGELG-IALRGGGAADPPFC 308
P PGP G+ G+ G+ G G GP + EPG G L+G P
Sbjct: 157 PPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGP-QGEPGPPGDRGLKGDNGVGQPGL 215
Query: 309 PHYEKVSGDYGHP 321
P G G P
Sbjct: 216 PGAPGQGGAPGPP 228
Score = 28.5 bits (62), Expect = 9.0
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 191 GAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAG-----GLALLLLGVAGA 245
G + EPG P P S G GP PP P GA G G+A L L G
Sbjct: 493 GEGRAGEPGTAG-PTGPPGVPGSPGITGPPGPPGPPGPPGAPGAFDETGIAGLHLPNGGV 551
Query: 246 GGAM 249
GA+
Sbjct: 552 EGAV 555
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 45.4 bits (106), Expect = 7e-05
Identities = 46/157 (29%), Positives = 57/157 (36%), Gaps = 31/157 (19%)
Query: 197 EPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLL-------------GVA 243
EPG+ PG +G GP PP P G G + L G +
Sbjct: 1003 EPGRYGPPGFHRGEPGEKGQPGPPGPPGPPGSTGLRGFIGFPGLPGDQGEPGSPGPPGFS 1062
Query: 244 GAGGAMCWRRRRAKPS----------ESRHPG-PGSFGRGGSLGLGGGGGMGPREAEPGE 292
G GA + + P+ E PG PG FG G GL G GPR PG
Sbjct: 1063 GIDGARGPKGNKGDPASHFGPPGPKGEPGSPGCPGHFGASGEQGL--PGIQGPR-GSPGR 1119
Query: 293 LGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGP 329
G G++ PP CP + G G P + GP
Sbjct: 1120 PG----PPGSSGPPGCPGDHGMPGLRGQPGEMGDPGP 1152
Score = 41.2 bits (95), Expect = 0.001
Identities = 47/155 (30%), Positives = 56/155 (36%), Gaps = 26/155 (16%)
Query: 189 DRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALL-LLGVAGAGG 247
D H PGK L G P G +GP P P G AG L L G G G
Sbjct: 761 DPAFGHLGPPGKRGLSGVP-------GIKGPRGDPGCPGAEGPAGIPGFLGLKGPKGREG 813
Query: 248 AMCWRRRRAKPSESRHPG-PGSFGRGGSLGLGGGGGMGPREAEPGELG----IALRG--- 299
+ P S G PG G+ G G G G + +PG++G ++G
Sbjct: 814 HAGFPGVPGPPGHSCERGAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGLPG 873
Query: 300 ----GGAADPPFCPHYEKVSGDYGHPVYIVQDGPP 330
GA PP P GD G P GPP
Sbjct: 874 LPGRPGAHGPPGLPGIPGPFGDDGLP------GPP 902
Score = 40.4 bits (93), Expect = 0.002
Identities = 40/138 (28%), Positives = 53/138 (38%), Gaps = 26/138 (18%)
Query: 198 PGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAK 257
PG+ +PG P S A G P P + GA G L G+ G+ C
Sbjct: 419 PGEAGIPGRPDS------APGKPGKPGSPGLPGAPG-----LQGLPGSSVIYC------- 460
Query: 258 PSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGG--GAADPPFCPHYEKVS 315
+PGP +G +G GG GP+ + E A G G PP P +
Sbjct: 461 --SVGNPGP----QGIKGKVGPPGGRGPKGEKGNEGLCACEPGPMGPPGPPGLPGRQGSK 514
Query: 316 GDYGHPVYIVQDGPPQSP 333
GD G P ++ G P P
Sbjct: 515 GDLGLPGWLGTKGDPGPP 532
Score = 39.7 bits (91), Expect = 0.004
Identities = 47/156 (30%), Positives = 55/156 (35%), Gaps = 34/156 (21%)
Query: 198 PGKENLPGDPTSNAT--SRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRR 255
PG+ LPG P S +G G + PP + G G L G GA G
Sbjct: 836 PGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGLPG-----LPGRPGAHGPPGLPGIP 890
Query: 256 AKPSESRHPGP----------GSFGRGGSLGLGGGGGMGPREAEPGELGIA-------LR 298
+ PGP G G G G G G + EPGE G++ LR
Sbjct: 891 GPFGDDGLPGPPGPKGPRGLPGFPGFPGERGKPGAEGCPGAKGEPGEKGMSGLPGDRGLR 950
Query: 299 GG-GAADPPFCPHYEKVSGDYGHPVYIVQDGPPQSP 333
G GA PP GD G I Q G P P
Sbjct: 951 GAKGAIGPP---------GDEGEMAIISQKGTPGEP 977
Score = 37.7 bits (86), Expect = 0.015
Identities = 44/147 (29%), Positives = 52/147 (35%), Gaps = 22/147 (14%)
Query: 197 EPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRA 256
+PG E PG ++G G +P G G + G G G M ++
Sbjct: 922 KPGAEGCPG-------AKGEPGEKGMSGLPGDRGLRGAKGAI--GPPGDEGEMAIISQKG 972
Query: 257 KPSESRHPGP-GSFGRGGSLGLGGGGGMGPREAEPGELGIA--LRG-------GGAADPP 306
P E PGP G G G G G GM R EPG G RG G PP
Sbjct: 973 TPGE---PGPPGDDGFPGERGDKGTPGMQGRRGEPGRYGPPGFHRGEPGEKGQPGPPGPP 1029
Query: 307 FCPHYEKVSGDYGHPVYIVQDGPPQSP 333
P + G G P G P SP
Sbjct: 1030 GPPGSTGLRGFIGFPGLPGDQGEPGSP 1056
Score = 37.4 bits (85), Expect = 0.019
Identities = 38/113 (33%), Positives = 43/113 (38%), Gaps = 13/113 (11%)
Query: 198 PGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAK 257
PG GDP GAEGP P +P GA+G G GA G M R +
Sbjct: 520 PGWLGTKGDPGPP----GAEGP---PGLPGKHGASGPP-----GNKGAKGDMVVSRVKGH 567
Query: 258 PSESRHPGPGSF-GRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCP 309
E GP F G+ GS G G G PG+ A GG P P
Sbjct: 568 KGERGPDGPPGFPGQPGSHGRDGHAGEKGDPGPPGDHEDATPGGKGFPGPLGP 620
Score = 37.4 bits (85), Expect = 0.019
Identities = 37/124 (29%), Positives = 46/124 (37%), Gaps = 19/124 (15%)
Query: 199 GKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKP 258
G + GDP S+ G +G P P GA+G L G+ G G+
Sbjct: 1069 GPKGNKGDPASHFGPPGPKGEPGSPGCPGHFGASGEQGLP--GIQGPRGS---------- 1116
Query: 259 SESRHPG-PGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSGD 317
PG PG G G G G GM +PGE+G G DP P + G
Sbjct: 1117 -----PGRPGPPGSSGPPGCPGDHGMPGLRGQPGEMGDPGPRGLQGDPGI-PGPPGIKGP 1170
Query: 318 YGHP 321
G P
Sbjct: 1171 SGSP 1174
Score = 36.6 bits (83), Expect = 0.033
Identities = 44/146 (30%), Positives = 52/146 (35%), Gaps = 26/146 (17%)
Query: 198 PGKENLPGDPTSNATS----RGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRR 253
PG + GDP S S RG +GP PP G AG + G
Sbjct: 1206 PGLKGERGDPGSPGISPPGPRGKKGPPGPPGSSGPPGPAGATGRAPKDIPDPG------- 1258
Query: 254 RRAKPSESRHPGP-GSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYE 312
P + PGP G G G GL G + EPG+ G+ G PP P Y+
Sbjct: 1259 ---PPGDQGPPGPDGPRGAPGPPGLPGSVDL--LRGEPGDCGLP-GPPGPPGPPGPPGYK 1312
Query: 313 KVSGDYGHPVYIVQDGP-----PQSP 333
G G Q GP PQ P
Sbjct: 1313 GFPGCDGKD---GQKGPVGFPGPQGP 1335
Score = 35.8 bits (81), Expect = 0.056
Identities = 43/157 (27%), Positives = 51/157 (32%), Gaps = 27/157 (17%)
Query: 176 VPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGL 235
+P P P + + H+ G PG RGA GP P P G G
Sbjct: 123 IPGHPGPPGPRGKPGMSGHNGSRGDPGFPG-------GRGALGPGGPLGHPGEKGEKGNS 175
Query: 236 ALLLLGVAGAGGAMCWRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGI 295
+L V G G PG G GS G GG G EPG +G
Sbjct: 176 VFILGAVKGIQGD--------------RGDPGLPGLPGSWGAGGPAGPTGYPGEPGLVGP 221
Query: 296 ALRGG--GAADPPFCPHYEKVSGDYGHPVYIVQDGPP 330
+ G G P V G G P + Q G P
Sbjct: 222 PGQPGRPGLKGNPGV----GVKGQMGDPGEVGQQGSP 254
Score = 31.2 bits (69), Expect = 1.4
Identities = 24/71 (33%), Positives = 27/71 (38%), Gaps = 14/71 (19%)
Query: 264 PGP----GSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSGDYG 319
PGP G G G +GL G GM PG G G P P + + G G
Sbjct: 70 PGPQGPIGPLGAPGPIGLSGEKGMRGDRGPPGAAG----DKGDKGPTGVPGFPGLDGIPG 125
Query: 320 HPVYIVQDGPP 330
HP GPP
Sbjct: 126 HP------GPP 130
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 45.4 bits (106), Expect = 7e-05
Identities = 42/143 (29%), Positives = 56/143 (39%), Gaps = 16/143 (11%)
Query: 197 EPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRA 256
+PG LPG P G EGP+ PP P + G G G G G +
Sbjct: 929 KPGARGLPG-PRGQLGPEGDEGPMGPPGAPGLEGQPGRKG--FPGRPGLDGV------KG 979
Query: 257 KPSESRHPGP-GSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVS 315
+P + PGP G G G +GL G G+ + + G +G G P + +
Sbjct: 980 EPGDPGRPGPVGEQGFMGFIGLVGEPGIVGEKGDRGMMG----PPGVPGPKGSMGHPGMP 1035
Query: 316 GDYGHPVYIVQDGPPQS--PPNI 336
G G P GPP S PP +
Sbjct: 1036 GGMGTPGEPGPQGPPGSRGPPGM 1058
Score = 40.8 bits (94), Expect = 0.002
Identities = 48/162 (29%), Positives = 61/162 (37%), Gaps = 22/162 (13%)
Query: 180 PVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALL- 238
P+ ++ DRG +PG + G+ G +GP PP + V G G
Sbjct: 1196 PMGPDGLKGDRG-----DPGPDGEHGEKGQEGLM-GEDGPPGPPGVTGVRGPEGKSGKQG 1249
Query: 239 ---LLGVAGAGGAMCWRRRRAKPSESRHPG-PGSFGRGGSLGLGGGGGMGPREAEPGELG 294
G GA G P + PG PG G GSLG G G + EPG G
Sbjct: 1250 EKGRTGAKGAKGYQGQLGEMGVPGDPGPPGTPGPKGSRGSLGPTGAPGRMGAQGEPGLAG 1309
Query: 295 IALRGG--GAADPPFCPHYEKVSGDYGHPVYIVQDGPPQSPP 334
G G PP P EK G+ G +DG + PP
Sbjct: 1310 YDGHKGIVGPLGPP-GPKGEK--GEQG------EDGKAEGPP 1342
Score = 38.5 bits (88), Expect = 0.009
Identities = 42/135 (31%), Positives = 49/135 (36%), Gaps = 17/135 (12%)
Query: 204 PGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRH 263
P P SRG +GP P P G GVAG G + R P S
Sbjct: 1070 PDGPAGEQGSRGLKGPPGPQGRPGRPGQQ--------GVAGERGHLGSRGFPGIPGPSGP 1121
Query: 264 PG----PGSFGRGGSLG-LGGGGGMGPR--EAEPGELGIALRGG--GAADPPFCPHYEKV 314
PG PG G G G +G G MGP+ GE G+ G G P P + +
Sbjct: 1122 PGTKGLPGEPGPQGPQGPIGPPGEMGPKGPPGAVGEPGLPGEAGMKGDLGPLGTPGEQGL 1181
Query: 315 SGDYGHPVYIVQDGP 329
G G P GP
Sbjct: 1182 IGQRGEPGLEGDSGP 1196
Score = 35.8 bits (81), Expect = 0.056
Identities = 46/182 (25%), Positives = 64/182 (35%), Gaps = 47/182 (25%)
Query: 198 PGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAG-----GLA-----------LLLLG 241
PG LPG P + RG GP P +P GA G GL+ + L G
Sbjct: 639 PGLPGLPGIPGARGP-RGPPGPYGNPGLPGPPGAKGQKGDPGLSPGKAHDGAKGDMGLPG 697
Query: 242 VAGAGGAMCWRRRRAKPSESRHPG----------------------------PGSFGRGG 273
++G G + + P + HPG PG G G
Sbjct: 698 LSGNPGPPGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKGSRG 757
Query: 274 SLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEK--VSGDYGHPVYIVQDGPPQ 331
+GL G G+ + E G G+ + G P F + + G G+P + GPP
Sbjct: 758 YIGLPGLFGLPGSDGERGLPGVPGKRGKMGMPGFPGVFGERGPPGLDGNPGELGLPGPPG 817
Query: 332 SP 333
P
Sbjct: 818 VP 819
Score = 35.8 bits (81), Expect = 0.056
Identities = 41/154 (26%), Positives = 55/154 (35%), Gaps = 27/154 (17%)
Query: 199 GKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKP 258
G + LPG P +G EG P +P G AG G G G M +R P
Sbjct: 1421 GLQGLPG-PRGVVGRQGLEGIAGPDGLPGRDGQAGQQGEQ--GDDGDPGPMGPAGKRGNP 1477
Query: 259 SESRHPG-------------PGSFGRGGSLGLGGGGGMGPREAEP---------GELGIA 296
+ PG PG G G G G G+ + EP GE+G
Sbjct: 1478 GVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGRTGLPGNQGEPGSKGQPGDSGEMGFP 1537
Query: 297 LRGG--GAADPPFCPHYEKVSGDYGHPVYIVQDG 328
G G PP ++ + G G P + ++G
Sbjct: 1538 GMAGLFGPKGPPGDIGFKGIQGPRGPPGLMGKEG 1571
Score = 33.9 bits (76), Expect = 0.21
Identities = 38/149 (25%), Positives = 56/149 (37%), Gaps = 28/149 (18%)
Query: 197 EPGKENLPGD-----------------PTSNATSRGAEGPLPPPSMPAVAGAAGGLALLL 239
EPG + PGD P + +G +GP PP + G G L +
Sbjct: 1521 EPGSKGQPGDSGEMGFPGMAGLFGPKGPPGDIGFKGIQGPRGPPGLMGKEGIVGPLG--I 1578
Query: 240 LGVAGAGGAMCWRRRRAKPSESRHPG-PGSFGRGGSLGLGGGGGMGPREAEPGELGIALR 298
LG +G G + R G PG GR G G G GP + + +LG A +
Sbjct: 1579 LGPSGLPGPKGDKGSRGDWGLQGPRGPPGPRGRPGPPGPPG----GPIQLQQDDLGAAFQ 1634
Query: 299 ----GGGAADPPFCPHYEKVSGDYGHPVY 323
GA P + +++ D G ++
Sbjct: 1635 TWMDTSGALRPESYSYPDRLVLDQGGEIF 1663
Score = 33.5 bits (75), Expect = 0.28
Identities = 37/124 (29%), Positives = 45/124 (36%), Gaps = 8/124 (6%)
Query: 215 GAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGPGSFGRGGS 274
G +G + P MP G G G G+ G R + + GP G GS
Sbjct: 1024 GPKGSMGHPGMPGGMGTPGEPGPQ--GPPGSRGPPGMRGAKGRRGPRGPDGPA--GEQGS 1079
Query: 275 LGLGGGGGMGPREAEPGELGIALRGG--GAADPPFCPHYEKVSGDYGHPVYIVQDGP--P 330
GL G G R PG+ G+A G G+ P P G G P GP P
Sbjct: 1080 RGLKGPPGPQGRPGRPGQQGVAGERGHLGSRGFPGIPGPSGPPGTKGLPGEPGPQGPQGP 1139
Query: 331 QSPP 334
PP
Sbjct: 1140 IGPP 1143
Score = 32.3 bits (72), Expect = 0.62
Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 9/101 (8%)
Query: 198 PGKENLPGDP--TSNATSRGAEGPLPPPSMPAVAGAAG--GLALLLLGVAGAGGAMCWRR 253
PG+ G+P +G GPL PP G G G A G G G + R
Sbjct: 1296 PGRMGAQGEPGLAGYDGHKGIVGPLGPPGPKGEKGEQGEDGKAEGPPGPPGDRGPVGDRG 1355
Query: 254 RRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELG 294
R +P + PG G+ G GL G G + PG G
Sbjct: 1356 DRGEPGD-----PGYPGQEGVQGLRGKPGQQGQPGHPGPRG 1391
Score = 31.6 bits (70), Expect = 1.1
Identities = 52/197 (26%), Positives = 68/197 (34%), Gaps = 36/197 (18%)
Query: 147 GLESLQGGVCLTRGMKVLLRVGQ-SPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPG 205
GL G L + VL +G P+G V E ++ D+G E G + G
Sbjct: 811 GLPGPPGVPGLIGDLGVLGPIGYPGPKGMKGLMGSVGEPGLKGDKG-----EQGVPGVSG 865
Query: 206 DPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPG 265
DP +G +G P P G G L G G G++ + PG
Sbjct: 866 DPGF----QGDKGSQGLPGFPGARGKPGPL-----GKVGDKGSIGF------------PG 904
Query: 266 P-GSFGRGGSLGLGGGGGMGPREAEPGELGIALRGG--------GAADPPFCPHYEKVSG 316
P G G G +G G G + +PG G+ G G PP P E G
Sbjct: 905 PPGPEGFPGDIGPPGDNGPEGMKGKPGARGLPGPRGQLGPEGDEGPMGPPGAPGLEGQPG 964
Query: 317 DYGHPVYIVQDGPPQSP 333
G P DG P
Sbjct: 965 RKGFPGRPGLDGVKGEP 981
Score = 30.4 bits (67), Expect = 2.4
Identities = 35/121 (28%), Positives = 40/121 (33%), Gaps = 32/121 (26%)
Query: 199 GKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKP 258
G+ +PGDP PP P G+ G L G GA G M
Sbjct: 1267 GEMGVPGDPG-------------PPGTPGPKGSRGSL-----GPTGAPGRM--------- 1299
Query: 259 SESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSGDY 318
PG G G G+ G G + E GE G G A PP P GD
Sbjct: 1300 --GAQGEPGLAGYDGHKGIVGPLGPPGPKGEKGEQG---EDGKAEGPPGPPGDRGPVGDR 1354
Query: 319 G 319
G
Sbjct: 1355 G 1355
Score = 30.0 bits (66), Expect = 3.1
Identities = 32/111 (28%), Positives = 43/111 (38%), Gaps = 15/111 (13%)
Query: 198 PGKENLPGDPTSNAT--SRGAEGPLPPPSMPAVAGAAGGLALLLL-------GVAGAGGA 248
PG+ LPG P G GP+ P + G G + L GV G G
Sbjct: 807 PGELGLPGPPGVPGLIGDLGVLGPIGYPGPKGMKGLMGSVGEPGLKGDKGEQGVPGVSGD 866
Query: 249 MCWRRRRAKPSESRHPG----PGSFGRGGSLG-LGGGGGMGPREAEPGELG 294
++ + PG PG G+ G G +G G GP E PG++G
Sbjct: 867 PGFQGDKGSQGLPGFPGARGKPGPLGKVGDKGSIGFPGPPGP-EGFPGDIG 916
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 45.1 bits (105), Expect = 9e-05
Identities = 49/186 (26%), Positives = 63/186 (33%), Gaps = 29/186 (15%)
Query: 172 RGGAVPRKPVSEMPMERDRGAAHSLEP----GKENLPGDP-----------TSNATSRGA 216
+G A P P E + GA + P G+ PG P T A G
Sbjct: 277 KGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGP 336
Query: 217 EGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPG----PGSFGRG 272
GP PP P GA G G G+ G R P + G PG+ G+
Sbjct: 337 TGPAGPPGFPGAVGAKGEAG--PQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQP 394
Query: 273 GSLGLGGGGGMGPREAEPGELGIALRGGGAADP--------PFCPHYEKVSGDYGHPVYI 324
G+ G G G+ PG G + G P P P + +G G P +
Sbjct: 395 GAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPV 454
Query: 325 VQDGPP 330
GPP
Sbjct: 455 GVQGPP 460
Score = 45.1 bits (105), Expect = 9e-05
Identities = 55/182 (30%), Positives = 58/182 (31%), Gaps = 33/182 (18%)
Query: 166 RVGQ-SPRGGAVPRKPVSEMPMERDRGAAHSL----EPGKENLPGDP--TSNATSRGAEG 218
RVG P G A P P E +G PG+ PG P S GA+G
Sbjct: 882 RVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADG 941
Query: 219 PLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGP----------GS 268
P P P G AG GV G G R P S PG G
Sbjct: 942 PAGAPGTPGPQGIAG-----QRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGP 996
Query: 269 FGRGGSLGLGGGGGMGPREAEPGELGIALRGG-----------GAADPPFCPHYEKVSGD 317
G G GL G G RE PG G R G G A PP P G
Sbjct: 997 PGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGP 1056
Query: 318 YG 319
G
Sbjct: 1057 VG 1058
Score = 41.2 bits (95), Expect = 0.001
Identities = 46/163 (28%), Positives = 54/163 (33%), Gaps = 10/163 (6%)
Query: 169 QSPRGGAVPRKPVSEMPMERDRGAAHSL-EPGKENLPGDP--TSNATSRGAEGPLPPPSM 225
Q P G P+ E +G + EPG + G P RGA G P +
Sbjct: 421 QGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGL 480
Query: 226 PAVAGAAGGLALL-LLGVAGAGGAMCWRRRRAKPSESRHPG-PGSFGRGGSLGLGGGGGM 283
P G GG G G G R P + G PG GR G GL G G+
Sbjct: 481 PGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGL 540
Query: 284 GPREAEPGELGIALRGG-----GAADPPFCPHYEKVSGDYGHP 321
PG G G G PP P +G G P
Sbjct: 541 TGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFP 583
Score = 40.4 bits (93), Expect = 0.002
Identities = 48/165 (29%), Positives = 58/165 (35%), Gaps = 30/165 (18%)
Query: 189 DRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAG-----GLALLLLGVA 243
DRG A G + G P + RG GP+ PP G G G A G
Sbjct: 744 DRGDA-----GPKGADGSPGKDGV-RGLTGPIGPPGPAGAPGDKGESGPSGPA----GPT 793
Query: 244 GAGGAMCWRRRRAKPSESRHPGP-GSFGRGGSLGLGGGGGMGPREAEPGELGIALRGG-- 300
GA GA R P + GP G+ G+ G+ G G G PG G A G
Sbjct: 794 GARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPI 853
Query: 301 ------------GAADPPFCPHYEKVSGDYGHPVYIVQDGPPQSP 333
G+A PP + +G G P GPP P
Sbjct: 854 GNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPP 898
Score = 38.9 bits (89), Expect = 0.007
Identities = 42/134 (31%), Positives = 52/134 (38%), Gaps = 27/134 (20%)
Query: 197 EPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRA 256
+PG + PGD GA+G PP AG G + + G GA GA R A
Sbjct: 822 QPGAKGEPGDA-------GAKGDAGPPGPAGPAGPPGPIGNV--GAPGAKGA----RGSA 868
Query: 257 KPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSG 316
P PG+ G G+ G G G PG G A + GG P E +G
Sbjct: 869 GP-------PGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKG-----PRGE--TG 914
Query: 317 DYGHPVYIVQDGPP 330
G P + GPP
Sbjct: 915 PAGRPGEVGPPGPP 928
Score = 38.5 bits (88), Expect = 0.009
Identities = 39/134 (29%), Positives = 51/134 (38%), Gaps = 24/134 (17%)
Query: 171 PRGGAVPRKPVSEMPMERDRG----AAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMP 226
P+G A R V +RG S EPGK+ P+ + RG GP+ PP +
Sbjct: 951 PQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQG----PSGASGERGPPGPMGPPGLA 1006
Query: 227 AVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPR 286
G +G GA G A+ S R PG+ G G G G G
Sbjct: 1007 GPPGESGR--------EGAPG--------AEGSPGRDGSPGAKGDRGETGPAGPPGAPGA 1050
Query: 287 EAEPGELGIALRGG 300
PG +G A + G
Sbjct: 1051 PGAPGPVGPAGKSG 1064
Score = 38.1 bits (87), Expect = 0.011
Identities = 51/200 (25%), Positives = 62/200 (31%), Gaps = 53/200 (26%)
Query: 169 QSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAV 228
+ P+G PR P RG A PG++ +PG P G GP PP P
Sbjct: 111 EGPKGDTGPRGP---------RGPAGP--PGRDGIPGQP-------GLPGPPGPPGPPGP 152
Query: 229 AGAAGGLALLLL-----------------------GVAGAGGAMCWRRRRAKPSESRHPG 265
G G A L G+ G GA + + P E PG
Sbjct: 153 PGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPG 212
Query: 266 ----------PGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPH--YEK 313
PG G+ G G G G PG G G A P H +
Sbjct: 213 ASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSG 272
Query: 314 VSGDYGHPVYIVQDGPPQSP 333
+ G G G P SP
Sbjct: 273 LDGAKGDAGPAGPKGEPGSP 292
Score = 38.1 bits (87), Expect = 0.011
Identities = 32/107 (29%), Positives = 40/107 (37%), Gaps = 10/107 (9%)
Query: 198 PGKENLPG-----DPTSNATSRGAEGPLPPPSMPAVAGAAGGLALL-LLGVAGAGGAMCW 251
PG PG P A RG+ GP P P AG G L G+ G+ G+
Sbjct: 490 PGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGP 549
Query: 252 RRRRAKPSESRHPG----PGSFGRGGSLGLGGGGGMGPREAEPGELG 294
+ P + G PG G G G+ G G EPG+ G
Sbjct: 550 DGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAG 596
Score = 36.2 bits (82), Expect = 0.043
Identities = 47/153 (30%), Positives = 56/153 (36%), Gaps = 29/153 (18%)
Query: 176 VPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGL 235
VP P + P +D E G + PG P A RG +GP P + G AG
Sbjct: 600 VPGPPGAVGPAGKDG------EAGAQGPPG-PAGPAGERGEQGPAGSPGFQGLPGPAGP- 651
Query: 236 ALLLLGVAGAGGAMCWRRRRAKPSESRHPGP----GSFGRGGSLGL-GGGGGMGPREAE- 289
G AG G + P + PGP G G G G+ G G GPR A
Sbjct: 652 ----PGEAGKPG------EQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANG 701
Query: 290 -PGELGIALRGGGAADPPFCPHYEKVSGDYGHP 321
PG G G A P P + G G P
Sbjct: 702 APGNDG----AKGDAGAPGAPGSQGAPGLQGMP 730
Score = 33.1 bits (74), Expect = 0.37
Identities = 33/101 (32%), Positives = 37/101 (36%), Gaps = 5/101 (4%)
Query: 169 QSPRGGAVPRKPVSEMPMERDRGA-AHSLEPGKENLPGDPTSNATS--RGAEGPLPPPSM 225
+ P G PR E + DRG H G + PG P S GA GP P
Sbjct: 1084 RGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGP 1143
Query: 226 PAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGP 266
P AGA G L G+ G G R R PGP
Sbjct: 1144 PGSAGAPGKDG--LNGLPGPIGPPGPRGRTGDAGPVGPPGP 1182
Score = 30.8 bits (68), Expect = 1.8
Identities = 41/147 (27%), Positives = 45/147 (30%), Gaps = 22/147 (14%)
Query: 198 PGKENLPGD--PTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRR 255
PG PG P + RG GP P GA G G G G +
Sbjct: 1048 PGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGP-----AGPQGPRGDKGETGEQ 1102
Query: 256 AKPSESRHPG-------PGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGG--GAADPP 306
H G PG G G G G G PG G + G G P
Sbjct: 1103 GDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPI 1162
Query: 307 FCPHYEKVSGDYGHPVYIVQDGPPQSP 333
P +GD G PV GPP P
Sbjct: 1163 GPPGPRGRTGDAG-PV-----GPPGPP 1183
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 45.1 bits (105), Expect = 9e-05
Identities = 44/137 (32%), Positives = 53/137 (38%), Gaps = 22/137 (16%)
Query: 198 PGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAK 257
PGK+ LPG P + G +G PP V G G G G G
Sbjct: 951 PGKDGLPGHPGQRGET-GFQGKTGPPGPGGVVGPQGPT-----GETGPIG---------- 994
Query: 258 PSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSGD 317
E HPGP G G GL G G + +PG GI+ + G A F P + G
Sbjct: 995 --ERGHPGPP--GPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGF-PGERGLPGA 1049
Query: 318 YGHPVYIVQDGPPQSPP 334
G P +G PQ PP
Sbjct: 1050 QGAPGLKGGEG-PQGPP 1065
Score = 40.8 bits (94), Expect = 0.002
Identities = 45/154 (29%), Positives = 60/154 (38%), Gaps = 21/154 (13%)
Query: 183 EMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGV 242
+M ++ DRG + P E+ P P +G GP P AG G LGV
Sbjct: 803 DMGLKGDRGEVGQIGPRGEDGPEGP------KGRAGPTGDPGPSGQAGEKG-----KLGV 851
Query: 243 AGAGGAMCWRRRRAKPSESRHPG-PGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGG 301
G G + R+ + PG PG+ G G+ G+ G G + G G G
Sbjct: 852 PGLPG---YPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRG----SRG 904
Query: 302 AADPPFCPHYEKVSGDYGHPVYIVQDGP--PQSP 333
A P P + SG G P + GP PQ P
Sbjct: 905 ARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGP 938
Score = 39.3 bits (90), Expect = 0.005
Identities = 53/181 (29%), Positives = 65/181 (35%), Gaps = 22/181 (12%)
Query: 169 QSPRGGAVPRKPVSEMPMERDR-----GAAHSLEPGK------ENLPGDPTSNATSRGAE 217
Q PRG P P + P +R R G EPG + LPG P RG
Sbjct: 573 QGPRGVQGPPGPTGK-PGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKG-HRGER 630
Query: 218 GPLPPPSMPAVAGAAGGLALL----LLGVAGAGGAMCWRRRRAKPSESRHPG-PGSFGRG 272
GP PP P G G + L G AG G + R P + G G G
Sbjct: 631 GPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPK 690
Query: 273 GSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGPPQS 332
G++G G G ++ PG G+ G P P + G G DGPP
Sbjct: 691 GNMGPQGEPGPPGQQGNPGPQGLP----GPQGPIGPPGEKGPQGKPGLAGLPGADGPPGH 746
Query: 333 P 333
P
Sbjct: 747 P 747
Score = 39.3 bits (90), Expect = 0.005
Identities = 45/152 (29%), Positives = 54/152 (35%), Gaps = 18/152 (11%)
Query: 198 PGKENLPGD--PTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRR 255
PG + PGD P N G G PP P AG G + G G G
Sbjct: 1305 PGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDG-----VGGDKGEDGDPGQPGPP 1359
Query: 256 AKPSESRHPGP-------GSFGRGGSLGLGGGGGMGPREAEPGELG-IALRG-GGAADPP 306
E+ PGP G+ G G G G G E PG+ G + +G G P
Sbjct: 1360 GPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPE 1419
Query: 307 FCPHYEKVSGDYGHPVYIVQDGP--PQSPPNI 336
G+ G P QDGP P PP +
Sbjct: 1420 GLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGL 1451
Score = 38.1 bits (87), Expect = 0.011
Identities = 46/176 (26%), Positives = 56/176 (31%), Gaps = 30/176 (17%)
Query: 169 QSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATS-----RGAEGPLPPP 223
Q P G P+ P + G EPG+ PG P RG +G PP
Sbjct: 1242 QGPNGADGPQGPPGSVGSVG--GVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPP 1299
Query: 224 SMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPG-PGSFGRGGSLGLGGGGG 282
GA G G G + P PG PG G G G G GG
Sbjct: 1300 GAAGPPGAKGP--------PGDDGP------KGNPGPVGFPGDPGPPGEPGPAGQDGVGG 1345
Query: 283 MGPREAEPGELGIALRGG--------GAADPPFCPHYEKVSGDYGHPVYIVQDGPP 330
+ +PG+ G G G PP E G+ G +GPP
Sbjct: 1346 DKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP 1401
Score = 38.1 bits (87), Expect = 0.011
Identities = 48/165 (29%), Positives = 61/165 (36%), Gaps = 25/165 (15%)
Query: 173 GGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAA 232
G P+ P + E RG + G++ LPG A G GP+ PP +P + G
Sbjct: 1405 GPVGPQGPAGKPGPEGLRGIPGPV--GEQGLPGA----AGQDGPPGPMGPPGLPGLKGDP 1458
Query: 233 GGLALL----LLGVAGAGGAMCWRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREA 288
G L+G+ G G + R P PG+ G GG G G G
Sbjct: 1459 GSKGEKGHPGLIGLIGPPGEQGEKGDRGLP--GTQGSPGAKGDGGIPGPAGPLGPPGPPG 1516
Query: 289 EPGELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGPPQSP 333
PG G G P +K GD G P GPP SP
Sbjct: 1517 LPGPQGPKGNKGSTG-----PAGQK--GDSGLP------GPPGSP 1548
Score = 37.4 bits (85), Expect = 0.019
Identities = 47/177 (26%), Positives = 63/177 (35%), Gaps = 32/177 (18%)
Query: 169 QSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAV 228
Q P G P P + D+G EPG++ GD +G GP PP +
Sbjct: 1119 QGPVGLPGPAGPAGSPGEDGDKGEIG--EPGQKGSKGD-------KGENGPPGPPGLQGP 1169
Query: 229 AGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGPGSF-GRGGSLGLGGGGGMGPRE 287
GA G+AG G R ++ + G F G G +GL G G +
Sbjct: 1170 VGAP--------GIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEK 1221
Query: 288 AEPGELG----------IALRGGGAADPPFCPHYEKVS----GDYGHPVYIVQDGPP 330
E G++G +G AD P P S G+ G P GPP
Sbjct: 1222 GENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1278
Score = 37.0 bits (84), Expect = 0.025
Identities = 40/146 (27%), Positives = 47/146 (32%), Gaps = 34/146 (23%)
Query: 199 GKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKP 258
G + LPG P + G GP+ PP P G G G G G
Sbjct: 1210 GLQGLPGPPGEKGEN-GDVGPMGPPGPPGPRGPQGPN-----GADGPQGP---------- 1253
Query: 259 SESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGG-----------GAADPPF 307
PGS G G +G G G PGE G+ G GAA PP
Sbjct: 1254 -------PGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPG 1306
Query: 308 CPHYEKVSGDYGHPVYIVQDGPPQSP 333
G G+P + G P P
Sbjct: 1307 AKGPPGDDGPKGNPGPVGFPGDPGPP 1332
Score = 35.8 bits (81), Expect = 0.056
Identities = 41/147 (27%), Positives = 50/147 (34%), Gaps = 27/147 (18%)
Query: 172 RGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGA 231
RG P P + M + G E G LPG+ A RG GP P P G
Sbjct: 630 RGPQGPPGPPGDDGMRGEDG-----EIGPRGLPGE----AGPRGLLGPRGTPGAPGQPGM 680
Query: 232 AGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGP-------------GSFGRGGSLGLG 278
AG + G G G M + P + +PGP G G G GL
Sbjct: 681 AG-----VDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLA 735
Query: 279 GGGGMGPREAEPGELGIALRGGGAADP 305
G G PG+ G + G P
Sbjct: 736 GLPGADGPPGHPGKEGQSGEKGALGPP 762
Score = 29.3 bits (64), Expect = 5.3
Identities = 32/110 (29%), Positives = 42/110 (38%), Gaps = 21/110 (19%)
Query: 199 GKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAG--GLALLL---LGVAGAGGAMCWRR 253
G PGDP G GP P +P G G G L+L G G+ G +
Sbjct: 472 GPTGPPGDP-------GDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQ 524
Query: 254 --------RRAKPSESRHPGP-GSFGRGGSLGLGGGGGMGPREAEPGELG 294
++A+ + PGP G GR G +G G G +PG G
Sbjct: 525 EAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQG 574
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 45.1 bits (105), Expect = 9e-05
Identities = 44/137 (32%), Positives = 53/137 (38%), Gaps = 22/137 (16%)
Query: 198 PGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAK 257
PGK+ LPG P + G +G PP V G G G G G
Sbjct: 900 PGKDGLPGHPGQRGET-GFQGKTGPPGPGGVVGPQGPT-----GETGPIG---------- 943
Query: 258 PSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSGD 317
E HPGP G G GL G G + +PG GI+ + G A F P + G
Sbjct: 944 --ERGHPGPP--GPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGF-PGERGLPGA 998
Query: 318 YGHPVYIVQDGPPQSPP 334
G P +G PQ PP
Sbjct: 999 QGAPGLKGGEG-PQGPP 1014
Score = 40.8 bits (94), Expect = 0.002
Identities = 45/154 (29%), Positives = 60/154 (38%), Gaps = 21/154 (13%)
Query: 183 EMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGV 242
+M ++ DRG + P E+ P P +G GP P AG G LGV
Sbjct: 752 DMGLKGDRGEVGQIGPRGEDGPEGP------KGRAGPTGDPGPSGQAGEKG-----KLGV 800
Query: 243 AGAGGAMCWRRRRAKPSESRHPG-PGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGG 301
G G + R+ + PG PG+ G G+ G+ G G + G G G
Sbjct: 801 PGLPG---YPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRG----SRG 853
Query: 302 AADPPFCPHYEKVSGDYGHPVYIVQDGP--PQSP 333
A P P + SG G P + GP PQ P
Sbjct: 854 ARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGP 887
Score = 39.3 bits (90), Expect = 0.005
Identities = 53/181 (29%), Positives = 65/181 (35%), Gaps = 22/181 (12%)
Query: 169 QSPRGGAVPRKPVSEMPMERDR-----GAAHSLEPGK------ENLPGDPTSNATSRGAE 217
Q PRG P P + P +R R G EPG + LPG P RG
Sbjct: 522 QGPRGVQGPPGPTGK-PGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKG-HRGER 579
Query: 218 GPLPPPSMPAVAGAAGGLALL----LLGVAGAGGAMCWRRRRAKPSESRHPG-PGSFGRG 272
GP PP P G G + L G AG G + R P + G G G
Sbjct: 580 GPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPK 639
Query: 273 GSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGPPQS 332
G++G G G ++ PG G+ G P P + G G DGPP
Sbjct: 640 GNMGPQGEPGPPGQQGNPGPQGLP----GPQGPIGPPGEKGPQGKPGLAGLPGADGPPGH 695
Query: 333 P 333
P
Sbjct: 696 P 696
Score = 39.3 bits (90), Expect = 0.005
Identities = 45/152 (29%), Positives = 54/152 (35%), Gaps = 18/152 (11%)
Query: 198 PGKENLPGD--PTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRR 255
PG + PGD P N G G PP P AG G + G G G
Sbjct: 1254 PGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDG-----VGGDKGEDGDPGQPGPP 1308
Query: 256 AKPSESRHPGP-------GSFGRGGSLGLGGGGGMGPREAEPGELG-IALRG-GGAADPP 306
E+ PGP G+ G G G G G E PG+ G + +G G P
Sbjct: 1309 GPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPE 1368
Query: 307 FCPHYEKVSGDYGHPVYIVQDGP--PQSPPNI 336
G+ G P QDGP P PP +
Sbjct: 1369 GLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGL 1400
Score = 38.1 bits (87), Expect = 0.011
Identities = 46/176 (26%), Positives = 56/176 (31%), Gaps = 30/176 (17%)
Query: 169 QSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATS-----RGAEGPLPPP 223
Q P G P+ P + G EPG+ PG P RG +G PP
Sbjct: 1191 QGPNGADGPQGPPGSVGSVG--GVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPP 1248
Query: 224 SMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPG-PGSFGRGGSLGLGGGGG 282
GA G G G + P PG PG G G G G GG
Sbjct: 1249 GAAGPPGAKGP--------PGDDGP------KGNPGPVGFPGDPGPPGEPGPAGQDGVGG 1294
Query: 283 MGPREAEPGELGIALRGG--------GAADPPFCPHYEKVSGDYGHPVYIVQDGPP 330
+ +PG+ G G G PP E G+ G +GPP
Sbjct: 1295 DKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP 1350
Score = 38.1 bits (87), Expect = 0.011
Identities = 48/165 (29%), Positives = 61/165 (36%), Gaps = 25/165 (15%)
Query: 173 GGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAA 232
G P+ P + E RG + G++ LPG A G GP+ PP +P + G
Sbjct: 1354 GPVGPQGPAGKPGPEGLRGIPGPV--GEQGLPGA----AGQDGPPGPMGPPGLPGLKGDP 1407
Query: 233 GGLALL----LLGVAGAGGAMCWRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREA 288
G L+G+ G G + R P PG+ G GG G G G
Sbjct: 1408 GSKGEKGHPGLIGLIGPPGEQGEKGDRGLP--GTQGSPGAKGDGGIPGPAGPLGPPGPPG 1465
Query: 289 EPGELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGPPQSP 333
PG G G P +K GD G P GPP SP
Sbjct: 1466 LPGPQGPKGNKGSTG-----PAGQK--GDSGLP------GPPGSP 1497
Score = 37.4 bits (85), Expect = 0.019
Identities = 47/177 (26%), Positives = 63/177 (35%), Gaps = 32/177 (18%)
Query: 169 QSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAV 228
Q P G P P + D+G EPG++ GD +G GP PP +
Sbjct: 1068 QGPVGLPGPAGPAGSPGEDGDKGEIG--EPGQKGSKGD-------KGENGPPGPPGLQGP 1118
Query: 229 AGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGPGSF-GRGGSLGLGGGGGMGPRE 287
GA G+AG G R ++ + G F G G +GL G G +
Sbjct: 1119 VGAP--------GIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEK 1170
Query: 288 AEPGELG----------IALRGGGAADPPFCPHYEKVS----GDYGHPVYIVQDGPP 330
E G++G +G AD P P S G+ G P GPP
Sbjct: 1171 GENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1227
Score = 37.0 bits (84), Expect = 0.025
Identities = 40/146 (27%), Positives = 47/146 (32%), Gaps = 34/146 (23%)
Query: 199 GKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKP 258
G + LPG P + G GP+ PP P G G G G G
Sbjct: 1159 GLQGLPGPPGEKGEN-GDVGPMGPPGPPGPRGPQGPN-----GADGPQGP---------- 1202
Query: 259 SESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGG-----------GAADPPF 307
PGS G G +G G G PGE G+ G GAA PP
Sbjct: 1203 -------PGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPG 1255
Query: 308 CPHYEKVSGDYGHPVYIVQDGPPQSP 333
G G+P + G P P
Sbjct: 1256 AKGPPGDDGPKGNPGPVGFPGDPGPP 1281
Score = 35.8 bits (81), Expect = 0.056
Identities = 41/147 (27%), Positives = 50/147 (34%), Gaps = 27/147 (18%)
Query: 172 RGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGA 231
RG P P + M + G E G LPG+ A RG GP P P G
Sbjct: 579 RGPQGPPGPPGDDGMRGEDG-----EIGPRGLPGE----AGPRGLLGPRGTPGAPGQPGM 629
Query: 232 AGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGP-------------GSFGRGGSLGLG 278
AG + G G G M + P + +PGP G G G GL
Sbjct: 630 AG-----VDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLA 684
Query: 279 GGGGMGPREAEPGELGIALRGGGAADP 305
G G PG+ G + G P
Sbjct: 685 GLPGADGPPGHPGKEGQSGEKGALGPP 711
Score = 29.3 bits (64), Expect = 5.3
Identities = 32/110 (29%), Positives = 42/110 (38%), Gaps = 21/110 (19%)
Query: 199 GKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAG--GLALLL---LGVAGAGGAMCWRR 253
G PGDP G GP P +P G G G L+L G G+ G +
Sbjct: 421 GPTGPPGDP-------GDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQ 473
Query: 254 --------RRAKPSESRHPGP-GSFGRGGSLGLGGGGGMGPREAEPGELG 294
++A+ + PGP G GR G +G G G +PG G
Sbjct: 474 EAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQG 523
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 45.1 bits (105), Expect = 9e-05
Identities = 44/137 (32%), Positives = 53/137 (38%), Gaps = 22/137 (16%)
Query: 198 PGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAK 257
PGK+ LPG P + G +G PP V G G G G G
Sbjct: 939 PGKDGLPGHPGQRGET-GFQGKTGPPGPGGVVGPQGPT-----GETGPIG---------- 982
Query: 258 PSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSGD 317
E HPGP G G GL G G + +PG GI+ + G A F P + G
Sbjct: 983 --ERGHPGPP--GPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGF-PGERGLPGA 1037
Query: 318 YGHPVYIVQDGPPQSPP 334
G P +G PQ PP
Sbjct: 1038 QGAPGLKGGEG-PQGPP 1053
Score = 40.8 bits (94), Expect = 0.002
Identities = 45/154 (29%), Positives = 60/154 (38%), Gaps = 21/154 (13%)
Query: 183 EMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGV 242
+M ++ DRG + P E+ P P +G GP P AG G LGV
Sbjct: 791 DMGLKGDRGEVGQIGPRGEDGPEGP------KGRAGPTGDPGPSGQAGEKG-----KLGV 839
Query: 243 AGAGGAMCWRRRRAKPSESRHPG-PGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGG 301
G G + R+ + PG PG+ G G+ G+ G G + G G G
Sbjct: 840 PGLPG---YPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRG----SRG 892
Query: 302 AADPPFCPHYEKVSGDYGHPVYIVQDGP--PQSP 333
A P P + SG G P + GP PQ P
Sbjct: 893 ARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGP 926
Score = 39.3 bits (90), Expect = 0.005
Identities = 53/181 (29%), Positives = 65/181 (35%), Gaps = 22/181 (12%)
Query: 169 QSPRGGAVPRKPVSEMPMERDR-----GAAHSLEPGK------ENLPGDPTSNATSRGAE 217
Q PRG P P + P +R R G EPG + LPG P RG
Sbjct: 561 QGPRGVQGPPGPTGK-PGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKG-HRGER 618
Query: 218 GPLPPPSMPAVAGAAGGLALL----LLGVAGAGGAMCWRRRRAKPSESRHPG-PGSFGRG 272
GP PP P G G + L G AG G + R P + G G G
Sbjct: 619 GPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPK 678
Query: 273 GSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGPPQS 332
G++G G G ++ PG G+ G P P + G G DGPP
Sbjct: 679 GNMGPQGEPGPPGQQGNPGPQGLP----GPQGPIGPPGEKGPQGKPGLAGLPGADGPPGH 734
Query: 333 P 333
P
Sbjct: 735 P 735
Score = 39.3 bits (90), Expect = 0.005
Identities = 45/152 (29%), Positives = 54/152 (35%), Gaps = 18/152 (11%)
Query: 198 PGKENLPGD--PTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRR 255
PG + PGD P N G G PP P AG G + G G G
Sbjct: 1293 PGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDG-----VGGDKGEDGDPGQPGPP 1347
Query: 256 AKPSESRHPGP-------GSFGRGGSLGLGGGGGMGPREAEPGELG-IALRG-GGAADPP 306
E+ PGP G+ G G G G G E PG+ G + +G G P
Sbjct: 1348 GPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPE 1407
Query: 307 FCPHYEKVSGDYGHPVYIVQDGP--PQSPPNI 336
G+ G P QDGP P PP +
Sbjct: 1408 GLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGL 1439
Score = 38.1 bits (87), Expect = 0.011
Identities = 46/176 (26%), Positives = 56/176 (31%), Gaps = 30/176 (17%)
Query: 169 QSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATS-----RGAEGPLPPP 223
Q P G P+ P + G EPG+ PG P RG +G PP
Sbjct: 1230 QGPNGADGPQGPPGSVGSVG--GVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPP 1287
Query: 224 SMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPG-PGSFGRGGSLGLGGGGG 282
GA G G G + P PG PG G G G G GG
Sbjct: 1288 GAAGPPGAKGP--------PGDDGP------KGNPGPVGFPGDPGPPGEPGPAGQDGVGG 1333
Query: 283 MGPREAEPGELGIALRGG--------GAADPPFCPHYEKVSGDYGHPVYIVQDGPP 330
+ +PG+ G G G PP E G+ G +GPP
Sbjct: 1334 DKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP 1389
Score = 38.1 bits (87), Expect = 0.011
Identities = 48/165 (29%), Positives = 61/165 (36%), Gaps = 25/165 (15%)
Query: 173 GGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAA 232
G P+ P + E RG + G++ LPG A G GP+ PP +P + G
Sbjct: 1393 GPVGPQGPAGKPGPEGLRGIPGPV--GEQGLPGA----AGQDGPPGPMGPPGLPGLKGDP 1446
Query: 233 GGLALL----LLGVAGAGGAMCWRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREA 288
G L+G+ G G + R P PG+ G GG G G G
Sbjct: 1447 GSKGEKGHPGLIGLIGPPGEQGEKGDRGLP--GTQGSPGAKGDGGIPGPAGPLGPPGPPG 1504
Query: 289 EPGELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGPPQSP 333
PG G G P +K GD G P GPP SP
Sbjct: 1505 LPGPQGPKGNKGSTG-----PAGQK--GDSGLP------GPPGSP 1536
Score = 37.4 bits (85), Expect = 0.019
Identities = 47/177 (26%), Positives = 63/177 (35%), Gaps = 32/177 (18%)
Query: 169 QSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAV 228
Q P G P P + D+G EPG++ GD +G GP PP +
Sbjct: 1107 QGPVGLPGPAGPAGSPGEDGDKGEIG--EPGQKGSKGD-------KGENGPPGPPGLQGP 1157
Query: 229 AGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGPGSF-GRGGSLGLGGGGGMGPRE 287
GA G+AG G R ++ + G F G G +GL G G +
Sbjct: 1158 VGAP--------GIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEK 1209
Query: 288 AEPGELG----------IALRGGGAADPPFCPHYEKVS----GDYGHPVYIVQDGPP 330
E G++G +G AD P P S G+ G P GPP
Sbjct: 1210 GENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1266
Score = 37.0 bits (84), Expect = 0.025
Identities = 40/146 (27%), Positives = 47/146 (32%), Gaps = 34/146 (23%)
Query: 199 GKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKP 258
G + LPG P + G GP+ PP P G G G G G
Sbjct: 1198 GLQGLPGPPGEKGEN-GDVGPMGPPGPPGPRGPQGPN-----GADGPQGP---------- 1241
Query: 259 SESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGG-----------GAADPPF 307
PGS G G +G G G PGE G+ G GAA PP
Sbjct: 1242 -------PGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPG 1294
Query: 308 CPHYEKVSGDYGHPVYIVQDGPPQSP 333
G G+P + G P P
Sbjct: 1295 AKGPPGDDGPKGNPGPVGFPGDPGPP 1320
Score = 35.8 bits (81), Expect = 0.056
Identities = 41/147 (27%), Positives = 50/147 (34%), Gaps = 27/147 (18%)
Query: 172 RGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGA 231
RG P P + M + G E G LPG+ A RG GP P P G
Sbjct: 618 RGPQGPPGPPGDDGMRGEDG-----EIGPRGLPGE----AGPRGLLGPRGTPGAPGQPGM 668
Query: 232 AGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGP-------------GSFGRGGSLGLG 278
AG + G G G M + P + +PGP G G G GL
Sbjct: 669 AG-----VDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLA 723
Query: 279 GGGGMGPREAEPGELGIALRGGGAADP 305
G G PG+ G + G P
Sbjct: 724 GLPGADGPPGHPGKEGQSGEKGALGPP 750
Score = 29.3 bits (64), Expect = 5.3
Identities = 32/110 (29%), Positives = 42/110 (38%), Gaps = 21/110 (19%)
Query: 199 GKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAG--GLALLL---LGVAGAGGAMCWRR 253
G PGDP G GP P +P G G G L+L G G+ G +
Sbjct: 460 GPTGPPGDP-------GDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQ 512
Query: 254 --------RRAKPSESRHPGP-GSFGRGGSLGLGGGGGMGPREAEPGELG 294
++A+ + PGP G GR G +G G G +PG G
Sbjct: 513 EAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQG 562
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 45.1 bits (105), Expect = 9e-05
Identities = 47/169 (27%), Positives = 58/169 (34%), Gaps = 36/169 (21%)
Query: 171 PRGGAVPRKPVSEMPMERDRGAAHSLE----PGKENLPGDPTSNAT--------SRGAEG 218
P GG+ P P ++ +RG+ PG LPG P SN S G +G
Sbjct: 844 PPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDG 903
Query: 219 PLPP------PSMPAVAGAAGGL----------------ALLLLGVAGAGGAMCWRRRRA 256
P P P P V+G G A LG+AG GA
Sbjct: 904 PPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPG 963
Query: 257 KPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADP 305
P PGP G G G G G+ PG G+ G A +P
Sbjct: 964 MPGPRGSPGPQ--GVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEP 1010
Score = 44.7 bits (104), Expect = 1e-04
Identities = 47/149 (31%), Positives = 58/149 (38%), Gaps = 14/149 (9%)
Query: 198 PGKENLPGD--PTSNATSRGAEGPLPPPSMPAVAGAAGGLALL----LLGVAGAGGAMCW 251
PG PG P + RG GP P P AG+ G G G GA
Sbjct: 1046 PGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGI 1105
Query: 252 RRRRAKPSESRHPG-PGSFGRGGSLGLGGGGG----MGPREAEPGELGIALRGGGAADP- 305
+ R P PG PG G+ G++G G G +GP PG+ G + G P
Sbjct: 1106 KGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGP-SGPPGKDGTSGHPGPIGPPG 1164
Query: 306 PFCPHYEKVS-GDYGHPVYIVQDGPPQSP 333
P E+ S G GHP GPP +P
Sbjct: 1165 PRGNRGERGSEGSPGHPGQPGPPGPPGAP 1193
Score = 44.3 bits (103), Expect = 2e-04
Identities = 53/174 (30%), Positives = 65/174 (37%), Gaps = 36/174 (20%)
Query: 186 MERDRGAAHSLEP-GKENLPGDPTSNATS-----RGAEGPLPPPSMPAVAGAAG-GLALL 238
M +RG S P G + PG P ++ RG GP+ PP G G G A
Sbjct: 727 MPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPG 786
Query: 239 LLGVAGAGGAMCWRRRRAKPSESRHPG----------------PGSFGRGGSLGLGG-GG 281
L G+AG G+ R P + PG PG G GG G+ G G
Sbjct: 787 LPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPG 846
Query: 282 GMGPREAEPGELGI-----ALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGPP 330
G GP PG G+ + G GAA P G G+P GPP
Sbjct: 847 GSGP-AGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNP------GPP 893
Score = 43.9 bits (102), Expect = 2e-04
Identities = 41/128 (32%), Positives = 47/128 (36%), Gaps = 23/128 (17%)
Query: 199 GKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKP 258
G+ LPG+ GA GP+ P P G G L G AGA G R +P
Sbjct: 285 GENGLPGE-------NGAPGPMGPRGAPGERGRPG-----LPGAAGARGNDGARGSDGQP 332
Query: 259 SESRHPG-------PGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHY 311
PG PG+ G G G G G + EPG G A GA PP P
Sbjct: 333 GPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHA----GAQGPPGPPGI 388
Query: 312 EKVSGDYG 319
G G
Sbjct: 389 NGSPGGKG 396
Score = 42.7 bits (99), Expect = 5e-04
Identities = 49/171 (28%), Positives = 58/171 (33%), Gaps = 27/171 (15%)
Query: 185 PMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAG----------- 233
P +D + PG+ LPG P G +GP P P + G G
Sbjct: 226 PAGKDGESGRPGRPGERGLPGPP-------GIKGPAGIPGFPGMKGHRGFDGRNGEKGET 278
Query: 234 GLALLL--LGVAGAGGAMCWRRRRAKPSESRHPG-PGSFGRGGSLGLGGGGGMGPREAEP 290
G L G+ G GA R P E PG PG+ G G+ G G G P
Sbjct: 279 GAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPP 338
Query: 291 GELGIALRGG--GAADPPFCPHYEKVSGDYGHP---VYIVQDGPPQSPPNI 336
G G G G P P G G P + GPP PP I
Sbjct: 339 GTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPP-GPPGI 388
Score = 41.6 bits (96), Expect = 0.001
Identities = 41/132 (31%), Positives = 54/132 (40%), Gaps = 18/132 (13%)
Query: 199 GKENLPGDPTSNAT--SRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRA 256
G + PG P N + +G GP P P + GA G G AGA GA R
Sbjct: 378 GAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPP-----GPAGANGAPGLRGGAG 432
Query: 257 KPSESR---HPGP-GSFGRGGSLGLGGGGGMGPREA---EPGELGIALRGGGAADPPFCP 309
+P ++ PGP G G G G+ G G ++ EPG G+ GAA P
Sbjct: 433 EPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLP----GAAGERGAP 488
Query: 310 HYEKVSGDYGHP 321
+ +G G P
Sbjct: 489 GFRGPAGPNGIP 500
Score = 41.6 bits (96), Expect = 0.001
Identities = 45/150 (30%), Positives = 54/150 (36%), Gaps = 23/150 (15%)
Query: 197 EPGKENLPGDPTSN-----ATSRGA---EGPLPPPSMPAVAGAAGGLALLLLGVAGAGGA 248
E GK+ PG+P +N A RGA GP P +P G AG G G G
Sbjct: 463 EDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGER-----GAPGPAGP 517
Query: 249 MCWRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGG-----GAA 303
R A R PG G G G GG G + PG G + R G G
Sbjct: 518 -----RGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPR 572
Query: 304 DPPFCPHYEKVSGDYGHPVYIVQDGPPQSP 333
P + G+ G P + G P P
Sbjct: 573 GQPGVMGFPGPKGNDGAPGKNGERGGPGGP 602
Score = 41.6 bits (96), Expect = 0.001
Identities = 53/174 (30%), Positives = 59/174 (33%), Gaps = 33/174 (18%)
Query: 171 PRGGAVPRKPVSEM----PMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMP 226
P G + PR M P D + E G PG P G GP PP
Sbjct: 565 PPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPG-PQGPPGKNGETGPQGPPGPT 623
Query: 227 AVAGAAGGLALL----LLGVAGAGGAMCWRRRRAKPSESRHPG-PGSFGRGGSLGLGGGG 281
G G L G+ G GG P E+ PG PG G G+ G GG
Sbjct: 624 GPGGDKGDTGPPGPQGLQGLPGTGGP---------PGENGKPGEPGPKGDAGAPGAPGGK 674
Query: 282 GMGPREAEPGELGIA----LRGG----------GAADPPFCPHYEKVSGDYGHP 321
G E G G+A LRGG GAA PP P G G P
Sbjct: 675 GDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMP 728
Score = 39.7 bits (91), Expect = 0.004
Identities = 42/125 (33%), Positives = 52/125 (41%), Gaps = 20/125 (16%)
Query: 198 PGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAK 257
PG+ PG P +A GA+GP PP + G G + G+ GA G M
Sbjct: 365 PGQRGEPG-PQGHA---GAQGPPGPPGINGSPGGKGEMGPA--GIPGAPGLM-------- 410
Query: 258 PSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRG-GGAADPPFCPHYEKVSG 316
+R P PG G G+ GL GG G + GE G RG G A P P + G
Sbjct: 411 --GARGP-PGPAGANGAPGLRGGAGEPGKNGAKGEPG--PRGERGEAGIPGVPGAKGEDG 465
Query: 317 DYGHP 321
G P
Sbjct: 466 KDGSP 470
Score = 37.7 bits (86), Expect = 0.015
Identities = 45/160 (28%), Positives = 52/160 (32%), Gaps = 42/160 (26%)
Query: 198 PGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAK 257
PG + PG+P G GP PP P G +G G G G R +
Sbjct: 197 PGYQGPPGEP-------GQAGPSGPPGPPGAIGPSGPA-----GKDGESG------RPGR 238
Query: 258 PSESRHPGP-------------------GSFGRGGSLGLGGGGGMGPREAEPGELG---- 294
P E PGP G GR G G G G+ PGE G
Sbjct: 239 PGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGP 298
Query: 295 IALRGG-GAADPPFCPHYEKVSGDYGHPVYIVQDGPPQSP 333
+ RG G P P G+ G Q GPP P
Sbjct: 299 MGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPP 338
Score = 37.7 bits (86), Expect = 0.015
Identities = 45/143 (31%), Positives = 52/143 (36%), Gaps = 32/143 (22%)
Query: 172 RGGAVPRKPVSEMPMERDRGAA----HSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPA 227
RG P+ P + +RGAA H PG PG P A +GA G P
Sbjct: 1082 RGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSP-GPAGQQGAIGS------PG 1134
Query: 228 VAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGP-------GSFGRGGSLGLGGG 280
AG G + G +G G K S HPGP G+ G GS G G
Sbjct: 1135 PAGPRGPV-----GPSGPPG---------KDGTSGHPGPIGPPGPRGNRGERGSEGSPGH 1180
Query: 281 GGMGPREAEPGELGIALRGGGAA 303
G PG G G GAA
Sbjct: 1181 PGQPGPPGPPGAPGPCCGGVGAA 1203
Score = 37.4 bits (85), Expect = 0.019
Identities = 44/144 (30%), Positives = 50/144 (34%), Gaps = 34/144 (23%)
Query: 198 PGKENLPG--DPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRR 255
PG + PG P A GA G PP MP G+ G + G +G GA R
Sbjct: 935 PGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVK--GESGKPGANGLSGER 992
Query: 256 AKPSESRHPG-------PGSFGRGGSLGL----GGGGGMGPR--------------EAEP 290
P PG PG G GS GL G GG G R P
Sbjct: 993 GPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPP 1052
Query: 291 GELGIALRGG-----GAADPPFCP 309
G +G A + G G A P P
Sbjct: 1053 GPVGPAGKSGDRGESGPAGPAGAP 1076
Score = 32.7 bits (73), Expect = 0.48
Identities = 37/140 (26%), Positives = 46/140 (32%), Gaps = 35/140 (25%)
Query: 204 PGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRH 263
P PT +G +GP P P + G G G+ G
Sbjct: 92 PTAPTRPPNGQGPQGPKGDPGPPGIPGRNGD-----PGIPGQ------------------ 128
Query: 264 PGPGSFGRGGSLGLGGGGGMGPREAEPG------ELGIALRG----GGAADPPFCPHYEK 313
PGS G G G+ GP+ P + G+A+ G G A PP P
Sbjct: 129 --PGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPG 186
Query: 314 VSGDYGHPVYIVQDGPPQSP 333
SG G P GPP P
Sbjct: 187 TSGHPGSPGSPGYQGPPGEP 206
Score = 32.7 bits (73), Expect = 0.48
Identities = 29/106 (27%), Positives = 40/106 (37%), Gaps = 10/106 (9%)
Query: 215 GAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGP-GSFGRGG 273
G GP PP P G +G G+ G+ ++ +P ++ GP G G G
Sbjct: 171 GYPGPAGPPGPPGPPGTSGH--------PGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIG 222
Query: 274 SLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSGDYG 319
G G G R PGE G+ G P P + + G G
Sbjct: 223 PSGPAGKDGESGRPGRPGERGLP-GPPGIKGPAGIPGFPGMKGHRG 267
Score = 32.7 bits (73), Expect = 0.48
Identities = 47/160 (29%), Positives = 50/160 (31%), Gaps = 45/160 (28%)
Query: 198 PGKENLPGDPTSNATSR--GAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRR 255
PG + PG P S S G GP P P V G G G GA G R
Sbjct: 545 PGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPK-----GNDGAPGKNGERGGP 599
Query: 256 AKPSESRHPG----------PGSFGRGGSLG---------------LGGGGGMGPREAEP 290
P PG PG G GG G GG G + EP
Sbjct: 600 GGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEP 659
Query: 291 GELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGPP 330
G G A GA P GD G P + GPP
Sbjct: 660 GPKGDA----GAPGAP------GGKGDAGAP---GERGPP 686
Score = 32.3 bits (72), Expect = 0.62
Identities = 52/165 (31%), Positives = 56/165 (33%), Gaps = 26/165 (15%)
Query: 172 RGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGA 231
RGGA P P E +GAA PG G P G G L P G
Sbjct: 695 RGGAGPPGP------EGGKGAAGP--PGPPGAAGTPGLQGMP-GERGGLGSPGPKGDKGE 745
Query: 232 AGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGP----GSFGRGGSLGLGGGGGMGPRE 287
GG GA G R PGP G G GG+ GL G GPR
Sbjct: 746 PGG--------PGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIA--GPR- 794
Query: 288 AEPGELGIALRGGGAADP--PFCPHYEKVSGDYGHPVYIVQDGPP 330
PGE G G A P P G+ G P + GPP
Sbjct: 795 GSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPP 839
Score = 32.3 bits (72), Expect = 0.62
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 173 GGAVPRKPVSEM-PMERDRGAAHSLEPGKENLPGDPTSNATSRGAEG----------PLP 221
G A PR PV P +D + H PG PG P N RG+EG P P
Sbjct: 1134 GPAGPRGPVGPSGPPGKDGTSGH---PGPIGPPG-PRGNRGERGSEGSPGHPGQPGPPGP 1189
Query: 222 PPSMPAVAGAAGGLALLLLGVAGAGG 247
P + G G A+ +G AGG
Sbjct: 1190 PGAPGPCCGGVGAAAIAGIGGEKAGG 1215
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.142 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,022,149
Number of Sequences: 37866
Number of extensions: 1153560
Number of successful extensions: 9899
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 512
Number of HSP's that attempted gapping in prelim test: 6390
Number of HSP's gapped (non-prelim): 2421
length of query: 340
length of database: 18,247,518
effective HSP length: 103
effective length of query: 237
effective length of database: 14,347,320
effective search space: 3400314840
effective search space used: 3400314840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.