Guide to the Human Genome
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Name: EFNA4 Sequence: fasta or formatted (201aa) NCBI GI: 4885197
Description:

ephrin A4 isoform a

Referenced in:

Ephrins and Ephrin Receptors

Other entries for this name:
alt prot [193aa] ephrin A4 isoform c
alt prot [207aa] ephrin A4 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5          7           2
 C cysteine            3.5          7           2
 D aspartate           2.5          5           1
 E glutamate           6.5         13           1
 F phenylalanine       4.0          8           1
 G glycine            10.0         20           2
 H histidine           2.0          4           1
 I isoleucine          2.5          5           1
 K lysine              2.0          4           1
 L leucine            15.9         32           8
 M methionine          1.0          2           1
 N asparagine          1.5          3           1
 P proline             9.5         19           2
 Q glutamine           2.5          5           1
 R arginine            7.0         14           1
 S serine              9.5         19           2
 T threonine           3.5          7           1
 V valine              6.5         13           2
 W tryptophan          2.5          5           1
 Y tyrosine            4.5          9           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ephrin A4 isoform a 
EFNA4                 0.782   ephrin A4 isoform c 
EFNA4                 0.782   ephrin A4 isoform b 
EFNA5                 0.293   ephrin-A5 
EFNA3                 0.291   ephrin A3 
EFNA1                 0.261   ephrin A1 isoform a precursor 
EFNA2                 0.256   ephrin-A2 precursor 
EFNA1                 0.216   ephrin A1 isoform b precursor 
EFNB2                 0.085   ephrin B2 
EFNB3                 0.085   ephrin-B3 precursor 
EFNB1                 0.070   ephrin-B1 precursor 
BCAM                  0.018   basal cell adhesion molecule isoform 1 precursor [Ho...
RBM12                 0.015   RNA binding motif protein 12 
RBM12                 0.015   RNA binding motif protein 12 
DSG3                  0.013   desmoglein 3 preproprotein 
FAM83C                0.013   hypothetical protein LOC128876 
CSPG4                 0.013   chondroitin sulfate proteoglycan 4 
TMEM66                0.013   transmembrane protein 66 
FMR1NB                0.010   fragile X mental retardation 1 neighbor 
C16orf79              0.010   hypothetical protein LOC283870 
LAMC2                 0.010   laminin, gamma 2 isoform b precursor 
LAMC2                 0.010   laminin, gamma 2 isoform a precursor 
CTSA                  0.008   cathepsin A isoform a precursor 
FREM2                 0.008   FRAS1-related extracellular matrix protein 2 precurs...
KDM6B                 0.008   lysine (K)-specific demethylase 6B 
RYK                   0.008   RYK receptor-like tyrosine kinase isoform 2 
RYK                   0.008   RYK receptor-like tyrosine kinase isoform 1 
GMIP                  0.008   GEM interacting protein 
GPR68                 0.008   G protein-coupled receptor 68 
KIAA1751              0.005   hypothetical protein LOC85452 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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