Guide to the Human Genome
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Name: EFNB3 Sequence: fasta or formatted (340aa) NCBI GI: 4503489
Description:

ephrin-B3 precursor

Referenced in:

Ephrins and Ephrin Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         26           2
 C cysteine            1.8          6           1
 D aspartate           3.5         12           1
 E glutamate           5.3         18           1
 F phenylalanine       2.1          7           1
 G glycine            16.5         56           5
 H histidine           2.6          9           2
 I isoleucine          2.1          7           2
 K lysine              2.6          9           1
 L leucine            10.9         37           4
 M methionine          2.1          7           1
 N asparagine          2.4          8           1
 P proline            11.8         40           3
 Q glutamine           2.4          8           1
 R arginine            7.6         26           4
 S serine              6.5         22           2
 T threonine           2.1          7           1
 V valine              5.3         18           1
 W tryptophan          0.9          3           1
 Y tyrosine            4.1         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ephrin-B3 precursor 
EFNB2                 0.314   ephrin B2 
EFNB1                 0.308   ephrin-B1 precursor 
EFNA2                 0.064   ephrin-A2 precursor 
EFNA4                 0.062   ephrin A4 isoform b 
EFNA3                 0.056   ephrin A3 
EFNA1                 0.056   ephrin A1 isoform b precursor 
EFNA1                 0.055   ephrin A1 isoform a precursor 
EFNA5                 0.052   ephrin-A5 
EFNA4                 0.049   ephrin A4 isoform c 
EFNA4                 0.049   ephrin A4 isoform a 
COL4A3                0.039   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.039   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.039   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.039   alpha 3 type IV collagen isoform 1 precursor 
COL10A1               0.036   type X collagen alpha 1 precursor 
COL5A2                0.036   alpha 2 type V collagen preproprotein 
COL2A1                0.033   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.033   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL11A2               0.032   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.032   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.032   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL8A2                0.029   collagen, type VIII, alpha 2 
COL4A4                0.029   alpha 4 type IV collagen precursor 
COL27A1               0.029   collagen, type XXVII, alpha 1 
COL1A1                0.029   alpha 1 type I collagen preproprotein 
COL11A1               0.029   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.029   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.029   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL3A1                0.029   collagen type III alpha 1 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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