Guide to the Human Genome
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Name: EFNA3 Sequence: fasta or formatted (238aa) NCBI GI: 4826708
Description:

ephrin A3

Referenced in:

Ephrins and Ephrin Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         16           3
 C cysteine            2.5          6           2
 D aspartate           1.3          3           1
 E glutamate           5.0         12           1
 F phenylalanine       4.6         11           2
 G glycine             9.2         22           3
 H histidine           4.6         11           1
 I isoleucine          2.5          6           1
 K lysine              4.2         10           1
 L leucine            10.5         25           7
 M methionine          2.1          5           1
 N asparagine          5.5         13           1
 P proline             8.8         21           1
 Q glutamine           3.4          8           1
 R arginine            4.2         10           2
 S serine              7.6         18           2
 T threonine           3.8          9           1
 V valine              6.7         16           1
 W tryptophan          1.3          3           1
 Y tyrosine            5.5         13           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ephrin A3 
EFNA2                 0.296   ephrin-A2 precursor 
EFNA5                 0.279   ephrin-A5 
EFNA1                 0.254   ephrin A1 isoform a precursor 
EFNA4                 0.242   ephrin A4 isoform a 
EFNA4                 0.237   ephrin A4 isoform c 
EFNA4                 0.237   ephrin A4 isoform b 
EFNA1                 0.223   ephrin A1 isoform b precursor 
EFNB3                 0.081   ephrin-B3 precursor 
EFNB2                 0.077   ephrin B2 
EFNB1                 0.056   ephrin-B1 precursor 
LRRC6                 0.017   leucine rich repeat containing 6 
RBMX                  0.015   RNA binding motif protein, X-linked 
NRG2                  0.015   neuregulin 2 isoform 2 
NRG2                  0.015   neuregulin 2 isoform 4 
NRG2                  0.015   neuregulin 2 isoform 3 
NRG2                  0.015   neuregulin 2 isoform 1 
SOX2                  0.013   sex-determining region Y-box 2 
PER3                  0.013   period 3 
ILF3                  0.013   interleukin enhancer binding factor 3 isoform d [Ho...
ILF3                  0.013   interleukin enhancer binding factor 3 isoform a [Hom...
SMARCA4               0.010   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.010   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.010   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.010   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.010   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.010   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.010   SWI/SNF-related matrix-associated actin-dependent re...
LOC100291817          0.010   PREDICTED: hypothetical protein XP_002345526 
LOC344065             0.010   PREDICTED: similar to zinc finger protein 570 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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