Guide to the Human Genome
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Name: EFNA5 Sequence: fasta or formatted (228aa) NCBI GI: 4503487
Description:

ephrin-A5

Referenced in:

Ephrins and Ephrin Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         11           2
 C cysteine            3.1          7           1
 D aspartate           7.0         16           2
 E glutamate           5.7         13           1
 F phenylalanine       7.0         16           1
 G glycine             4.4         10           1
 H histidine           3.1          7           1
 I isoleucine          3.1          7           1
 K lysine              4.4         10           1
 L leucine             9.6         22           2
 M methionine          2.6          6           1
 N asparagine          4.8         11           1
 P proline             6.6         15           1
 Q glutamine           1.8          4           1
 R arginine            6.6         15           2
 S serine              7.9         18           2
 T threonine           3.9          9           1
 V valine              7.9         18           1
 W tryptophan          1.3          3           1
 Y tyrosine            4.4         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ephrin-A5 
EFNA2                 0.390   ephrin-A2 precursor 
EFNA3                 0.295   ephrin A3 
EFNA1                 0.278   ephrin A1 isoform a precursor 
EFNA1                 0.260   ephrin A1 isoform b precursor 
EFNA4                 0.258   ephrin A4 isoform a 
EFNA4                 0.253   ephrin A4 isoform c 
EFNA4                 0.253   ephrin A4 isoform b 
EFNB2                 0.079   ephrin B2 
EFNB3                 0.079   ephrin-B3 precursor 
EFNB1                 0.075   ephrin-B1 precursor 
DSC1                  0.011   desmocollin 1 isoform Dsc1b preproprotein 
DSC1                  0.011   desmocollin 1 isoform Dsc1a preproprotein 
SF3B14                0.011   splicing factor 3B, 14 kDa subunit 
DNAI1                 0.009   dynein, axonemal, intermediate chain 1 
RSPRY1                0.007   ring finger and SPRY domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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