Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: EFNA2 Sequence: fasta or formatted (213aa) NCBI GI: 27894381
Description:

ephrin-A2 precursor

Referenced in:

Ephrins and Ephrin Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         18           2
 C cysteine            2.8          6           1
 D aspartate           3.8          8           2
 E glutamate           5.6         12           1
 F phenylalanine       5.2         11           1
 G glycine             7.5         16           3
 H histidine           2.8          6           1
 I isoleucine          2.3          5           1
 K lysine              1.9          4           1
 L leucine            10.8         23           6
 M methionine          1.4          3           1
 N asparagine          4.7         10           2
 P proline            12.2         26           4
 Q glutamine           1.4          3           1
 R arginine            7.5         16           1
 S serine              6.1         13           2
 T threonine           3.8          8           1
 V valine              4.2          9           1
 W tryptophan          1.4          3           1
 Y tyrosine            6.1         13           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ephrin-A2 precursor 
EFNA5                 0.408   ephrin-A5 
EFNA3                 0.327   ephrin A3 
EFNA1                 0.260   ephrin A1 isoform a precursor 
EFNA1                 0.251   ephrin A1 isoform b precursor 
EFNA4                 0.235   ephrin A4 isoform c 
EFNA4                 0.235   ephrin A4 isoform a 
EFNA4                 0.235   ephrin A4 isoform b 
EFNB3                 0.101   ephrin-B3 precursor 
EFNB1                 0.088   ephrin-B1 precursor 
EFNB2                 0.081   ephrin B2 
SHISA5                0.023   scotin 
HOXD9                 0.018   homeobox D9 
ASTN2                 0.016   astrotactin 2 isoform c 
ASTN2                 0.016   astrotactin 2 isoform b 
ASTN2                 0.016   astrotactin 2 isoform a 
KIAA1199              0.012   KIAA1199 
P2RX2                 0.012   purinergic receptor P2X2 isoform D 
PODNL1                0.012   podocan-like 1 isoform 1 
MMP11                 0.012   matrix metalloproteinase 11 preproprotein 
ITGA5                 0.009   integrin alpha 5 precursor 
NPW                   0.009   neuropeptide W preproprotein 
PODNL1                0.009   podocan-like 1 isoform 3 
PODNL1                0.009   podocan-like 1 isoform 2 
LOC100291220          0.009   PREDICTED: hypothetical protein XP_002347633 
LOC100287224          0.009   PREDICTED: hypothetical protein XP_002343483 
FOXG1                 0.009   forkhead box G1 
FUCA2                 0.009   fucosidase, alpha-L- 2, plasma 
SEMA4B                0.007   semaphorin 4B precursor 
SEMA4B                0.007   semaphorin 4B precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press