Guide to the Human Genome
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Name: EFNB2 Sequence: fasta or formatted (333aa) NCBI GI: 4758250
Description:

ephrin B2

Referenced in:

Ephrins and Ephrin Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         15           1
 C cysteine            2.4          8           1
 D aspartate           5.1         17           1
 E glutamate           3.9         13           1
 F phenylalanine       2.7          9           1
 G glycine             7.5         25           2
 H histidine           1.8          6           1
 I isoleucine          7.5         25           3
 K lysine              7.2         24           2
 L leucine             7.5         25           3
 M methionine          1.8          6           1
 N asparagine          5.4         18           3
 P proline             6.3         21           2
 Q glutamine           3.9         13           1
 R arginine            4.5         15           3
 S serine              9.6         32           2
 T threonine           6.0         20           3
 V valine              6.6         22           2
 W tryptophan          1.2          4           1
 Y tyrosine            4.5         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ephrin B2 
EFNB1                 0.514   ephrin-B1 precursor 
EFNB3                 0.330   ephrin-B3 precursor 
EFNA1                 0.064   ephrin A1 isoform b precursor 
EFNA1                 0.062   ephrin A1 isoform a precursor 
EFNA3                 0.056   ephrin A3 
EFNA5                 0.055   ephrin-A5 
EFNA2                 0.053   ephrin-A2 precursor 
EFNA4                 0.052   ephrin A4 isoform a 
EFNA4                 0.052   ephrin A4 isoform b 
EFNA4                 0.047   ephrin A4 isoform c 
SLC38A4               0.012   solute carrier family 38, member 4 
SLC38A4               0.012   solute carrier family 38, member 4 
CR1                   0.011   complement receptor 1 isoform S precursor 
CR1                   0.011   complement receptor 1 isoform F precursor 
LILRB1                0.011   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB1                0.011   leukocyte immunoglobulin-like receptor, subfamily B...
PTPRK                 0.009   protein tyrosine phosphatase, receptor type, K isof...
PTPRK                 0.009   protein tyrosine phosphatase, receptor type, K isofo...
LRRTM3                0.009   leucine rich repeat transmembrane neuronal 3 
LOC728802             0.009   PREDICTED: similar to phosphodiesterase 4D interact...
SLC3A1                0.008   solute carrier family 3, member 1 
SP1                   0.008   Sp1 transcription factor isoform a 
SP1                   0.008   Sp1 transcription factor isoform b 
LILRB3                0.008   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB3                0.008   leukocyte immunoglobulin-like receptor, subfamily B...
PDE4DIP               0.008   phosphodiesterase 4D interacting protein isoform 1 ...
C3orf18               0.008   hypothetical protein LOC51161 
UNC5C                 0.006   unc5C 
FLG                   0.006   filaggrin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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