Guide to the Human Genome
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Name: EFNA4 Sequence: fasta or formatted (207aa) NCBI GI: 33359686
Description:

ephrin A4 isoform b

Referenced in:

Ephrins and Ephrin Receptors

Other entries for this name:
alt prot [193aa] ephrin A4 isoform c
alt prot [201aa] ephrin A4 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         13           2
 C cysteine            3.9          8           2
 D aspartate           2.9          6           1
 E glutamate           6.3         13           1
 F phenylalanine       3.9          8           1
 G glycine            12.1         25           4
 H histidine           1.4          3           1
 I isoleucine          2.9          6           1
 K lysine              1.4          3           1
 L leucine            11.1         23           2
 M methionine          1.4          3           1
 N asparagine          1.9          4           1
 P proline             9.2         19           2
 Q glutamine           2.9          6           1
 R arginine            7.7         16           2
 S serine              7.7         16           2
 T threonine           3.9          8           1
 V valine              6.8         14           2
 W tryptophan          1.9          4           1
 Y tyrosine            4.3          9           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ephrin A4 isoform b 
EFNA4                 0.760   ephrin A4 isoform c 
EFNA4                 0.755   ephrin A4 isoform a 
EFNA5                 0.278   ephrin-A5 
EFNA3                 0.276   ephrin A3 
EFNA2                 0.247   ephrin-A2 precursor 
EFNA1                 0.242   ephrin A1 isoform a precursor 
EFNA1                 0.208   ephrin A1 isoform b precursor 
EFNB3                 0.104   ephrin-B3 precursor 
EFNB2                 0.082   ephrin B2 
EFNB1                 0.070   ephrin-B1 precursor 
RBM12                 0.015   RNA binding motif protein 12 
RBM12                 0.015   RNA binding motif protein 12 
LOC100287812          0.015   PREDICTED: hypothetical protein XP_002343253 
BCAM                  0.015   basal cell adhesion molecule isoform 1 precursor [Ho...
FAM83C                0.012   hypothetical protein LOC128876 
TMEM66                0.012   transmembrane protein 66 
DOK7                  0.010   downstream of tyrosine kinase 7 
LOC100133142          0.010   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100133142          0.010   PREDICTED: similar to zinc finger protein 208 [Homo...
FMR1NB                0.010   fragile X mental retardation 1 neighbor 
KDM6B                 0.007   lysine (K)-specific demethylase 6B 
RLF                   0.007   rearranged L-myc fusion 
LOC284648             0.005   PREDICTED: hypothetical protein 
LOC284648             0.005   PREDICTED: hypothetical protein 
LOC284648             0.005   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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