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Search of human proteins with 4503119
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4503119 cancer/testis antigen 1B [Homo sapiens]
(180 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4503119 cancer/testis antigen 1B [Homo sapiens] 374 e-104
gi|21281685 cancer/testis antigen 1A [Homo sapiens] 374 e-104
gi|50233789 cancer/testis antigen 2 isoform LAGE-1a [Homo sapiens] 318 2e-87
gi|10337609 cancer/testis antigen 2 isoform LAGE-1b [Homo sapiens] 231 3e-61
gi|239757949 PREDICTED: similar to CTL-recognized antigen on mel... 95 4e-20
gi|24430137 L antigen family, member 3 [Homo sapiens] 83 1e-16
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 58 5e-09
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 53 1e-07
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 53 1e-07
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 53 1e-07
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 53 1e-07
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 53 2e-07
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 53 2e-07
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 52 2e-07
gi|48762934 alpha 2 type I collagen [Homo sapiens] 52 3e-07
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 52 3e-07
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 52 3e-07
gi|195972866 keratin 10 [Homo sapiens] 52 4e-07
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 51 6e-07
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 51 6e-07
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 51 6e-07
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 51 6e-07
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 51 6e-07
gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens] 50 8e-07
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 50 1e-06
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 50 1e-06
gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo s... 50 1e-06
gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo s... 50 1e-06
gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo ... 50 1e-06
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 50 1e-06
>gi|4503119 cancer/testis antigen 1B [Homo sapiens]
Length = 180
Score = 374 bits (959), Expect = e-104
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA 60
MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA
Sbjct: 1 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA 60
Query: 61 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG 120
PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG
Sbjct: 61 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG 120
Query: 121 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR 180
VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR
Sbjct: 121 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR 180
>gi|21281685 cancer/testis antigen 1A [Homo sapiens]
Length = 180
Score = 374 bits (959), Expect = e-104
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA 60
MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA
Sbjct: 1 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA 60
Query: 61 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG 120
PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG
Sbjct: 61 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG 120
Query: 121 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR 180
VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR
Sbjct: 121 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR 180
>gi|50233789 cancer/testis antigen 2 isoform LAGE-1a [Homo sapiens]
Length = 180
Score = 318 bits (814), Expect = 2e-87
Identities = 152/180 (84%), Positives = 165/180 (91%)
Query: 1 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA 60
MQAEG+GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGP GGA
Sbjct: 1 MQAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA 60
Query: 61 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG 120
PRGPHGGAAS +G C CGAR P+SRLL+ ++ MPF++PMEAEL RR L++DA PLP PG
Sbjct: 61 PRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPG 120
Query: 121 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR 180
+LK+FTVSGN+L IRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQ PSGQRR
Sbjct: 121 AVLKDFTVSGNLLFIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQAPSGQRR 180
>gi|10337609 cancer/testis antigen 2 isoform LAGE-1b [Homo sapiens]
Length = 210
Score = 231 bits (589), Expect = 3e-61
Identities = 108/141 (76%), Positives = 123/141 (87%)
Query: 1 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA 60
MQAEG+GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGP GGA
Sbjct: 1 MQAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA 60
Query: 61 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG 120
PRGPHGGAAS +G C CGAR P+SRLL+ ++ MPF++PMEAEL RR L++DA PLP PG
Sbjct: 61 PRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPG 120
Query: 121 VLLKEFTVSGNILTIRLTAAD 141
+LK+FTVSGN+L + + D
Sbjct: 121 AVLKDFTVSGNLLFMSVRDQD 141
>gi|239757949 PREDICTED: similar to CTL-recognized antigen on
melanoma (CAMEL) [Homo sapiens]
Length = 154
Score = 94.7 bits (234), Expect = 4e-20
Identities = 67/155 (43%), Positives = 73/155 (47%), Gaps = 45/155 (29%)
Query: 38 GATGGRGPRGAGAARASGPGG------------GAPRGPHGGAASGLNGCCRCGARGPES 85
GA G +GPRG R P G GAP GP G A+ + C G
Sbjct: 33 GAQGQQGPRG----REEAPRGVRMAVPLLRRMEGAPAGPGGRTAACFSCILFCSVLGGSG 88
Query: 86 RLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPGVLLKEFTVSGNILTIRLTAADHRQL 145
+ + RR Q+ G RLTAADHRQL
Sbjct: 89 GEV-------------GAVRRRQQGQEV----------------GGRARSRLTAADHRQL 119
Query: 146 QLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR 180
QLSISSCLQQLSLLMWITQCFLPVFLAQ PSGQRR
Sbjct: 120 QLSISSCLQQLSLLMWITQCFLPVFLAQAPSGQRR 154
>gi|24430137 L antigen family, member 3 [Homo sapiens]
Length = 143
Score = 83.2 bits (204), Expect = 1e-16
Identities = 64/148 (43%), Positives = 78/148 (52%), Gaps = 19/148 (12%)
Query: 25 DGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPR----GPHGGAASGLNGCCRCGA 80
D GG GG G GG RG G A+ P GGAP GP AAS A
Sbjct: 7 DAGGGADGGDGR----GGHSCRG-GVDTAAAPAGGAPPAHAPGPGRDAASA--------A 53
Query: 81 RGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPGVLLKEFTVSGNILTIRLTAA 140
RG R F L++PF TP+EAE+A SLA DA P V+ K+ TVSG IL +R A
Sbjct: 54 RGSRMRPHIFTLSVPFPTPLEAEIAHGSLAPDAE--PHQRVVGKDLTVSGRILVVRWKAE 111
Query: 141 DHRQLQLSISSCLQQLSLLMWITQCFLP 168
D R L++S+ + L QLSL++ Q F P
Sbjct: 112 DCRLLRISVINFLDQLSLVVRTMQRFGP 139
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 57.8 bits (138), Expect = 5e-09
Identities = 40/90 (44%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 7 GTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASGP---- 56
G G+ GDA GP GP P GP GN G PG GA G GP GA GAA GP
Sbjct: 830 GDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPS 889
Query: 57 GGGAPRGPHGGAASGLNGCCRCGARGPESR 86
G P GP G A G G GP R
Sbjct: 890 GNAGPPGPPGPAGKE-GGKGPRGETGPAGR 918
Score = 50.8 bits (120), Expect = 6e-07
Identities = 32/68 (47%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 6 RGTGGSTGDADGPGGPGI--PDGPGGNAGGPGE---AGATGGRGPRGAGAARASGPGGGA 60
RG+ G G PG G P GP GNAG PG AG GG+GPRG A PG
Sbjct: 865 RGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGE-TGPAGRPGEVG 923
Query: 61 PRGPHGGA 68
P GP G A
Sbjct: 924 PPGPPGPA 931
Score = 50.8 bits (120), Expect = 6e-07
Identities = 30/66 (45%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRGAGAARASGPGGGA 60
+G G TG A PG PG P PG G +G GE G G GP G AR GP G
Sbjct: 1033 KGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGAR--GPAG-- 1088
Query: 61 PRGPHG 66
P+GP G
Sbjct: 1089 PQGPRG 1094
Score = 50.1 bits (118), Expect = 1e-06
Identities = 39/103 (37%), Positives = 43/103 (41%), Gaps = 26/103 (25%)
Query: 3 AEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG--------------- 47
A RG G+TG A PG P GP G G PG GA G GP+G
Sbjct: 319 AGARGNDGATGAAGPPG----PTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPG 374
Query: 48 -AGAARASGPGG--GAPRGPHGGAASGLNGCCRC----GARGP 83
G A A+GP G GA P A+G G GARGP
Sbjct: 375 PPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGP 417
Score = 47.4 bits (111), Expect = 7e-06
Identities = 39/93 (41%), Positives = 43/93 (46%), Gaps = 15/93 (16%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRG-AGAARASGPGG- 58
RG G G+ PG G PG G G PG+AGA G GP G AG A GP G
Sbjct: 796 RGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGN 855
Query: 59 -GAP--RGPHGGA----ASGLNGCC-RCGARGP 83
GAP +G G A A+G G R G GP
Sbjct: 856 VGAPGAKGARGSAGPPGATGFPGAAGRVGPPGP 888
Score = 46.6 bits (109), Expect = 1e-05
Identities = 30/70 (42%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
+G G +G DG G P GP G G PGE GA G GPRG R PG P G
Sbjct: 265 KGHRGFSG-LDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGR-PGAPGPAGAR 322
Query: 66 GG-AASGLNG 74
G A+G G
Sbjct: 323 GNDGATGAAG 332
Score = 46.6 bits (109), Expect = 1e-05
Identities = 35/93 (37%), Positives = 41/93 (44%), Gaps = 17/93 (18%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAG---ATGGRGPRGAGAARASGPGGGAPRG 63
G G G PG G+P GP G GGPG G A G GP+G R S PG P+G
Sbjct: 464 GEEGKRGARGEPGPTGLP-GPPGERGGPGSRGFPGADGVAGPKGPAGERGS-PGPAGPKG 521
Query: 64 PHGGA----------ASGLNGCCRCGARGPESR 86
G A A GL G G+ GP+ +
Sbjct: 522 SPGEAGRPGEAGLPGAKGLTG--SPGSPGPDGK 552
Score = 46.6 bits (109), Expect = 1e-05
Identities = 28/68 (41%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 6 RGTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA 60
RG G G PG G+ P GP G AG PG+ G +G GP G AR + PG
Sbjct: 745 RGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGA-PGDRG 803
Query: 61 PRGPHGGA 68
GP G A
Sbjct: 804 EPGPPGPA 811
Score = 46.6 bits (109), Expect = 1e-05
Identities = 40/107 (37%), Positives = 44/107 (41%), Gaps = 28/107 (26%)
Query: 6 RGTGGSTGDAD-----GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG------------- 47
RG G G A G GP P GP G+ G GE G G +G RG
Sbjct: 1066 RGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGS 1125
Query: 48 ---AGAARASGPGGGAPRGPHGGAAS----GLNGC-CRCGARGPESR 86
G + ASGP G PRGP G A + GLNG G GP R
Sbjct: 1126 PGEQGPSGASGPAG--PRGPPGSAGAPGKDGLNGLPGPIGPPGPRGR 1170
Score = 45.8 bits (107), Expect = 2e-05
Identities = 26/73 (35%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGN-----AGGPGEAGATGGRGPRGAGAARASGPGGGAP 61
G G+ G A PG G P G N AG PG GA G GP+G G G P
Sbjct: 377 GPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEP 436
Query: 62 RGPHGGAASGLNG 74
P +G G
Sbjct: 437 GAPGSKGDTGAKG 449
Score = 45.8 bits (107), Expect = 2e-05
Identities = 33/86 (38%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 2 QAEGRGTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGP 56
Q +G G+ G A PG PG P GPGG G G +G G G +G A+ P
Sbjct: 393 QPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGE-P 451
Query: 57 GGGAPRGPHGGAASGLNGCCRCGARG 82
G +GP G A G G + GARG
Sbjct: 452 GPVGVQGPPGPA--GEEG--KRGARG 473
Score = 45.4 bits (106), Expect = 3e-05
Identities = 32/79 (40%), Positives = 34/79 (43%), Gaps = 14/79 (17%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-----------AGAARASG 55
G G G PG PG P G G G PGE GA+G GPRG A +
Sbjct: 182 GPSGPRGLPGPPGAPG-PQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGR 240
Query: 56 PGGGAPRGPHGGAASGLNG 74
PG P GP G A GL G
Sbjct: 241 PGERGPPGPQG--ARGLPG 257
Score = 44.7 bits (104), Expect = 4e-05
Identities = 37/81 (45%), Positives = 38/81 (46%), Gaps = 13/81 (16%)
Query: 11 STGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGGAPRGPHGGAA 69
STG PG G P GP G G PG G G +GP G G ASGP G PRGP G
Sbjct: 171 STGGISVPGPMG-PSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMG--PRGPPG--P 225
Query: 70 SGLNG-------CCRCGARGP 83
G NG R G RGP
Sbjct: 226 PGKNGDDGEAGKPGRPGERGP 246
Score = 44.7 bits (104), Expect = 4e-05
Identities = 35/82 (42%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 6 RGTGGSTGDADGPG--GP-GIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPR 62
+G GS G+ PG GP G+P G G G PG AGA G G GA A PG P
Sbjct: 286 KGEPGSPGENGAPGQMGPRGLP-GERGRPGAPGPAGARGNDGATGA----AGPPGPTGPA 340
Query: 63 GPHG-GAASGLNGCCRCGARGP 83
GP G A G G G +GP
Sbjct: 341 GPPGFPGAVGAKG--EAGPQGP 360
Score = 44.7 bits (104), Expect = 4e-05
Identities = 37/90 (41%), Positives = 39/90 (43%), Gaps = 15/90 (16%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGG----- 59
+G G G A G PG P G G AG GEAGA G GP G AG GP G
Sbjct: 586 KGAAGEPGKAGERGVPG-PPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQG 644
Query: 60 --APRGPHGGAA----SGLNGCCRCGARGP 83
P GP G A G+ G GA GP
Sbjct: 645 LPGPAGPPGEAGKPGEQGVPG--DLGAPGP 672
Score = 44.7 bits (104), Expect = 4e-05
Identities = 32/74 (43%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 7 GTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATG---GRGPRGAGAARASGPGGGAP 61
G G G A PG G+P GP G AG PGE G G GP GA R PG
Sbjct: 629 GERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGF-PGERGV 687
Query: 62 RGPHGGAA-SGLNG 74
+GP G A G NG
Sbjct: 688 QGPPGPAGPRGANG 701
Score = 44.7 bits (104), Expect = 4e-05
Identities = 34/76 (44%), Positives = 37/76 (48%), Gaps = 13/76 (17%)
Query: 3 AEGR-GTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRG-AGAAR 52
A GR G G +G+A PG PG P G G AG PGE G G GP G G+
Sbjct: 879 AAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPG 938
Query: 53 ASGPGG--GAPRGPHG 66
A GP G G P GP G
Sbjct: 939 ADGPAGAPGTP-GPQG 953
Score = 44.7 bits (104), Expect = 4e-05
Identities = 36/91 (39%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 5 GRGTGGSTGDADGPG--GPGIPDGPGGNAGGPGE---AGATGGRGPRGAGAAR--ASGPG 57
G+G G TG A PG GP P GP G G PG AGA G GP+G R PG
Sbjct: 906 GKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPG 965
Query: 58 GGAPRG----PHGGAASGLNG-CCRCGARGP 83
RG P G G G RGP
Sbjct: 966 QRGERGFPGLPGPSGEPGKQGPSGASGERGP 996
Score = 44.3 bits (103), Expect = 6e-05
Identities = 29/73 (39%), Positives = 31/73 (42%), Gaps = 12/73 (16%)
Query: 7 GTGGSTGDADGPGGPGIPD-----------GPGGNAGGPGEAGATGGRGPRGAGAARASG 55
G GS G+A PG G+P GP G G PG AG G GP G AR
Sbjct: 518 GPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQA 577
Query: 56 PGGGAPRGPHGGA 68
G P GP G A
Sbjct: 578 GVMGFP-GPKGAA 589
Score = 44.3 bits (103), Expect = 6e-05
Identities = 28/77 (36%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 7 GTGGSTGDA--DGPGGPGIPDGPGGNAGGPGEAGATGGRGP--------RGAGAARASGP 56
G GS G+ G GP P GP G+AG PG+ G G GP R A P
Sbjct: 1121 GPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPP 1180
Query: 57 GGGAPRGPHGGAASGLN 73
G P GP G ++G +
Sbjct: 1181 GPPGPPGPPGPPSAGFD 1197
Score = 43.9 bits (102), Expect = 7e-05
Identities = 28/77 (36%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G TG GP G GP G G G+AG G GP+GA G P P
Sbjct: 548 GPDGKTGPP-GPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGA 606
Query: 67 GAASGLNGCCRCGARGP 83
+G +G GA+GP
Sbjct: 607 VGPAGKDG--EAGAQGP 621
Score = 43.5 bits (101), Expect = 1e-04
Identities = 32/78 (41%), Positives = 33/78 (42%), Gaps = 20/78 (25%)
Query: 7 GTGGSTGDADGPGGPGIPD-----------GPGGNAGGPGEAGATGGRGPRGA------- 48
G G G PG PG P GP G AG PG+AG G GP GA
Sbjct: 554 GPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKD 613
Query: 49 GAARASGPGGGAPRGPHG 66
G A A GP G P GP G
Sbjct: 614 GEAGAQGPPG--PAGPAG 629
Score = 43.5 bits (101), Expect = 1e-04
Identities = 33/82 (40%), Positives = 35/82 (42%), Gaps = 14/82 (17%)
Query: 7 GTGGSTGDADGPGGPGIP--------DGPGGNAGGPGEAGATGG---RGPRGA-GAARAS 54
G G G+A PG G+P G G G PGE G G GPRGA GA
Sbjct: 647 GPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGND 706
Query: 55 GPGG--GAPRGPHGGAASGLNG 74
G G GAP P A GL G
Sbjct: 707 GAKGDAGAPGAPGSQGAPGLQG 728
Score = 43.1 bits (100), Expect = 1e-04
Identities = 29/78 (37%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGGAPRGPH 65
G G+ GD G GP P GP G G PG+ G G GP G AG A G G
Sbjct: 773 GPAGAPGDK-GESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGD 831
Query: 66 GGAASGLNGCCRCGARGP 83
GA G GP
Sbjct: 832 AGAKGDAGPPGPAGPAGP 849
Score = 42.7 bits (99), Expect = 2e-04
Identities = 30/80 (37%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 4 EGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRG 63
E G G GD GP GP P GP G G PG+ G G GP G G G AP+
Sbjct: 106 ETTGVEGPKGDT-GPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLG-GNFAPQL 163
Query: 64 PHGGAASGLNGCCRCGARGP 83
+G G G GP
Sbjct: 164 SYGYDEKSTGGISVPGPMGP 183
Score = 42.7 bits (99), Expect = 2e-04
Identities = 33/85 (38%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 6 RGTGGSTGD--ADGPGGPGIPDGPGGNAGGPGEAGAT---GGRGPRGAGAARASGPGGGA 60
+G G G+ A GP GP P GP G G GEAG G RGP G AR G
Sbjct: 202 QGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGL 261
Query: 61 PRGPHGGAASGLNGC-CRCGARGPE 84
P SGL+G G GP+
Sbjct: 262 PGMKGHRGFSGLDGAKGDAGPAGPK 286
Score = 42.4 bits (98), Expect = 2e-04
Identities = 31/77 (40%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G G+ PG G P G G AG PGEAG G +G G+ PG GP G
Sbjct: 503 GPKGPAGERGSPGPAG-PKGSPGEAGRPGEAGLPGAKGLTGS----PGSPGPDGKTGPPG 557
Query: 67 GAASGLNGCCRCGARGP 83
A G +G R G GP
Sbjct: 558 PA--GQDG--RPGPPGP 570
Score = 41.2 bits (95), Expect = 5e-04
Identities = 38/101 (37%), Positives = 41/101 (40%), Gaps = 16/101 (15%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGG-GAPRGPH 65
G GS GD G PG P G G PG AG G RG RG GP G P G
Sbjct: 437 GAPGSKGDTGAKGEPG----PVGVQGPPGPAGEEGKRGARG-----EPGPTGLPGPPGER 487
Query: 66 GGAAS----GLNGCCRCGARGPESRLLEFYLAMPFATPMEA 102
GG S G +G G +GP A P +P EA
Sbjct: 488 GGPGSRGFPGADGV--AGPKGPAGERGSPGPAGPKGSPGEA 526
Score = 41.2 bits (95), Expect = 5e-04
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 6 RGTGGSTGDADGPGG---PGI--PDGPGGNAGGPGEAGATGGRGPRGAGAARA-SGPGG- 58
+G G++G+ PG PG+ P G G G PG G+ G G GA R +GP G
Sbjct: 985 QGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGP 1044
Query: 59 -GAPRGPHGGAASGLNGCCRCGARG 82
GAP P GA + + G RG
Sbjct: 1045 PGAPGAP--GAPGPVGPAGKSGDRG 1067
Score = 40.8 bits (94), Expect = 6e-04
Identities = 30/77 (38%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G GS G PG G G G AG PG GA G GP G A ++ G P GP G
Sbjct: 1019 GAEGSPGRDGSPGAKG-DRGETGPAGPPGAPGAPGAPGPVGP-AGKSGDRGETGPAGPAG 1076
Query: 67 GAASGLNGCCRCGARGP 83
GARGP
Sbjct: 1077 PVGP-------VGARGP 1086
Score = 40.0 bits (92), Expect = 0.001
Identities = 29/77 (37%), Positives = 33/77 (42%), Gaps = 16/77 (20%)
Query: 6 RGTGGSTG--DADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA----------GAARA 53
RG G G GP GP +G GN G G+AGA G G +GA GAA
Sbjct: 679 RGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGL 738
Query: 54 SGP----GGGAPRGPHG 66
GP G P+G G
Sbjct: 739 PGPKGDRGDAGPKGADG 755
Score = 39.7 bits (91), Expect = 0.001
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 7 GTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGP 64
G G+ G+ PG G+ P GP G G G G G +G GA A S G P
Sbjct: 671 GPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMP 730
Query: 65 HGGAASGLNG 74
A+GL G
Sbjct: 731 GERGAAGLPG 740
Score = 39.7 bits (91), Expect = 0.001
Identities = 38/95 (40%), Positives = 44/95 (46%), Gaps = 23/95 (24%)
Query: 6 RGTGGSTGDADGPGGPGIPDG----------PG-----GNAGGPGEAGATGGRGPRGAGA 50
+G+ G+ G A PG PG P G PG G G PG +G G +GP GA
Sbjct: 934 KGSPGADGPAGAPGTPG-PQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASG 992
Query: 51 ARASGPGGGAPRGPHGGAA-SGLNGCCRCGARGPE 84
R GP G P GP G A G +G R GA G E
Sbjct: 993 ER--GPPG--PMGPPGLAGPPGESG--REGAPGAE 1021
Score = 39.3 bits (90), Expect = 0.002
Identities = 33/73 (45%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 3 AEGR-GTGGSTGDADGPGGPGIPDGPGGNAGGP------GEAGATGGRGPRG-AGAARAS 54
AEG G GS G A G G P GP G G P G AG +G RG G AG A
Sbjct: 1020 AEGSPGRDGSPG-AKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPV 1078
Query: 55 GP-GGGAPRGPHG 66
GP G P GP G
Sbjct: 1079 GPVGARGPAGPQG 1091
Score = 38.9 bits (89), Expect = 0.002
Identities = 31/80 (38%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 6 RGTGGSTGD--ADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-------GAARASG- 55
+G G G ++GP G GP G AG G AG G G GA G A A G
Sbjct: 352 KGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGF 411
Query: 56 PGGGAPRGPHG-GAASGLNG 74
PG P GP G G G G
Sbjct: 412 PGARGPSGPQGPGGPPGPKG 431
Score = 38.5 bits (88), Expect = 0.003
Identities = 26/69 (37%), Positives = 28/69 (40%), Gaps = 11/69 (15%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGP--------RGAGAARASGPG 57
RG G G PG PG+P GP G G PG G G P + G GP
Sbjct: 123 RGPAGPPGRDGIPGQPGLP-GPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPM 181
Query: 58 GGAPRGPHG 66
G P GP G
Sbjct: 182 G--PSGPRG 188
Score = 37.4 bits (85), Expect = 0.007
Identities = 38/96 (39%), Positives = 40/96 (41%), Gaps = 23/96 (23%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--------GNAGGPGEAGATGGRGPRGA-GAARASGPG 57
G G G+A PG PG PG G AG PG G G G GA G A +GP
Sbjct: 227 GKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPK 286
Query: 58 G--------GAP--RGPHGGAASGLNGCCRCGARGP 83
G GAP GP G G G R GA GP
Sbjct: 287 GEPGSPGENGAPGQMGPRG--LPGERG--RPGAPGP 318
Score = 37.0 bits (84), Expect = 0.009
Identities = 26/78 (33%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
RG G G + PG G P G G G PG G G GP G + G+P
Sbjct: 970 RGFPGLPGPSGEPGKQG-PSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDG 1028
Query: 66 GGAASGLNGCCRCGARGP 83
A G G G GP
Sbjct: 1029 SPGAKGDRG--ETGPAGP 1044
Score = 36.6 bits (83), Expect = 0.012
Identities = 33/97 (34%), Positives = 36/97 (37%), Gaps = 24/97 (24%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--------------------GNAGGPGEAGATGGRGPR 46
G G+ GDA PG PG PG G+AG G G+ G G R
Sbjct: 704 GNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVR 763
Query: 47 G-AGAARASGPGGGAPRGPHGGAASGLNGCCRCGARG 82
G G GP GAP SG G GARG
Sbjct: 764 GLTGPIGPPGP-AGAPGDKGESGPSGPAG--PTGARG 797
Score = 27.7 bits (60), Expect = 5.6
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 9/47 (19%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGG---------PGEAGATGGR 43
RG G G PG PG P PG + G P E GGR
Sbjct: 1168 RGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFSFLPQPPQEKAHDGGR 1214
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 53.1 bits (126), Expect = 1e-07
Identities = 45/127 (35%), Positives = 53/127 (41%), Gaps = 29/127 (22%)
Query: 7 GTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRGA-GAARASG-P 56
G GG G+ PG PG P GP G G PG AGA G +G +GA G A A G P
Sbjct: 1342 GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP 1401
Query: 57 GGGAPRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPL 116
G P GP G A G GPE P+ + + QD PP
Sbjct: 1402 GKTGPVGPQGPA----------GKPGPEG-------LRGIPGPVGEQGLPGAAGQDGPPG 1444
Query: 117 PV--PGV 121
P+ PG+
Sbjct: 1445 PMGPPGL 1451
Score = 46.6 bits (109), Expect = 1e-05
Identities = 37/79 (46%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 3 AEGR-GTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG----AGAARASG 55
AEGR G G+ G+A G PG P GP G AG PG G G GP G GAA G
Sbjct: 1382 AEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDG 1441
Query: 56 PGGGAPRGPHGGAASGLNG 74
P G P GP G GL G
Sbjct: 1442 PPG--PMGPPG--LPGLKG 1456
Score = 46.2 bits (108), Expect = 2e-05
Identities = 35/91 (38%), Positives = 39/91 (42%), Gaps = 20/91 (21%)
Query: 6 RGTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRG----AGAARASGP 56
RG G G G PG+ P GP G G PGE G+ G GP G G GP
Sbjct: 1038 RGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGP 1097
Query: 57 GG--GAP--RGPHGGAASGLNGCCRCGARGP 83
G GAP +GP G A R G +GP
Sbjct: 1098 AGEKGAPGEKGPQGPAG-------RDGVQGP 1121
Score = 45.8 bits (107), Expect = 2e-05
Identities = 34/92 (36%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 7 GTGGSTGDAD--------GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPG 57
G G GD GP GP P+G G G PG G+ GG G +G G A GP
Sbjct: 1219 GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1278
Query: 58 G----GAPRGPHG--GAASGLNGCCRCGARGP 83
G G P+G G G A GA+GP
Sbjct: 1279 GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP 1310
Score = 45.1 bits (105), Expect = 3e-05
Identities = 30/63 (47%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG-GAPRG 63
RG+ G+ G PG PG P GP G A GE GA G +GP+G AG GP G P G
Sbjct: 1074 RGSAGTAGPIGLPGRPG-PQGPPGPA---GEKGAPGEKGPQGPAGRDGVQGPVGLPGPAG 1129
Query: 64 PHG 66
P G
Sbjct: 1130 PAG 1132
Score = 45.1 bits (105), Expect = 3e-05
Identities = 34/91 (37%), Positives = 38/91 (41%), Gaps = 14/91 (15%)
Query: 6 RGTGGSTGDADGPGGPGIP-----DGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA 60
+G G G PG PG P DG GG+ G G+ G G GP G A PG
Sbjct: 1317 KGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSG----EAGPPGPPG 1372
Query: 61 PRGPHGGA-ASGLNG----CCRCGARGPESR 86
RGP G A A G G GA GP +
Sbjct: 1373 KRGPPGAAGAEGRQGEKGAKGEAGAEGPPGK 1403
Score = 43.9 bits (102), Expect = 7e-05
Identities = 27/64 (42%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 5 GRGTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPR 62
G G G G+A PG PG GP G G GEAG G GP GA PG P+
Sbjct: 1262 GVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGA----KGPPGDDGPK 1317
Query: 63 GPHG 66
G G
Sbjct: 1318 GNPG 1321
Score = 42.4 bits (98), Expect = 2e-04
Identities = 36/85 (42%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG--GAP 61
G G G PG GI DGP G G PGE G G +G G G GP G G+P
Sbjct: 1012 GAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSP 1071
Query: 62 --RGPHGGAAS-GLNGCCRCGARGP 83
RG G A GL G R G +GP
Sbjct: 1072 GERGSAGTAGPIGLPG--RPGPQGP 1094
Score = 41.2 bits (95), Expect = 5e-04
Identities = 30/73 (41%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 6 RGTGGSTGDADGPGGPGIP--DGPGGN---AGGPGEAGATGGRGPRGA-GAARASG---- 55
+G G G A PG G P DGP GN G PG+ G G GP G G G
Sbjct: 1293 KGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGD 1352
Query: 56 PGGGAPRGPHGGA 68
PG P GP G A
Sbjct: 1353 PGQPGPPGPSGEA 1365
Score = 41.2 bits (95), Expect = 5e-04
Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
RG G+ G G GIP GP G G PG G G +GP+G G P G
Sbjct: 1485 RGLPGTQGSPGAKGDGGIP-GPAGPLGPPGPPGLPGPQGPKG-------NKGSTGPAGQK 1536
Query: 66 GGAASGLNGCCRCGARGPESRLLE 89
G SGL G G+ GP +++
Sbjct: 1537 GD--SGLPG--PPGSPGPPGEVIQ 1556
Score = 40.8 bits (94), Expect = 6e-04
Identities = 29/69 (42%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G G PG PG P G G G PGE G G GP G PG PRGP G
Sbjct: 1192 GQKGDEGARGFPGPPG-PIGLQGLPGPPGEKGENGDVGPMGP-------PGPPGPRGPQG 1243
Query: 67 -GAASGLNG 74
A G G
Sbjct: 1244 PNGADGPQG 1252
Score = 40.8 bits (94), Expect = 6e-04
Identities = 28/74 (37%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARAS-GPGG-----GA 60
G G G+A G GGP G G AG PG AG G +GP G + + GP G G
Sbjct: 1273 GNPGPPGEA-GVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGP 1331
Query: 61 PRGPHGGAASGLNG 74
P P G+ G
Sbjct: 1332 PGEPGPAGQDGVGG 1345
Score = 40.4 bits (93), Expect = 8e-04
Identities = 27/78 (34%), Positives = 32/78 (41%), Gaps = 16/78 (20%)
Query: 5 GRGTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGG 59
G G+ G+ G++ PG G P GP G G G GA GGRG G A+ G
Sbjct: 557 GPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDG 616
Query: 60 AP-----------RGPHG 66
P RGP G
Sbjct: 617 LPGLPGDKGHRGERGPQG 634
Score = 40.4 bits (93), Expect = 8e-04
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAP----- 61
G G+ G+ G G P GP G G G G+ G RGP G + + G G P
Sbjct: 871 GFPGANGEKGARGVAGKP-GPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGE 929
Query: 62 RGPHG 66
RGP G
Sbjct: 930 RGPQG 934
Score = 40.0 bits (92), Expect = 0.001
Identities = 32/89 (35%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 6 RGTGGSTGD-----ADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG- 58
RG G TG A GP G P G G G PG G G +GP+G G GP G
Sbjct: 891 RGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGP 950
Query: 59 ----GAPRGPHGGAASGLNGCCRCGARGP 83
G P P +G G + G GP
Sbjct: 951 PGKDGLPGHPGQRGETGFQG--KTGPPGP 977
Score = 40.0 bits (92), Expect = 0.001
Identities = 27/64 (42%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 6 RGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGG-GAPR 62
RG G G GP GP P G G G PG+ G TG +G G GPGG P+
Sbjct: 930 RGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTG-----PPGPGGVVGPQ 984
Query: 63 GPHG 66
GP G
Sbjct: 985 GPTG 988
Score = 40.0 bits (92), Expect = 0.001
Identities = 31/77 (40%), Positives = 36/77 (46%), Gaps = 19/77 (24%)
Query: 6 RGTGGSTGDADGPGGP--------GIPD-GPGGNAGGPGEAGATGGRGPRG-------AG 49
RG G G ADGP GP G+ + G G AG PG G G GP+G AG
Sbjct: 1239 RGPQGPNG-ADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAG 1297
Query: 50 AARASGPGGGAPRGPHG 66
A+GP G +GP G
Sbjct: 1298 PPGAAGPPGA--KGPPG 1312
Score = 39.7 bits (91), Expect = 0.001
Identities = 31/80 (38%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASG-PGGGAPRG 63
+G G G GP G P+GP G AG G+ G +G G +G G G PG P+G
Sbjct: 807 KGDRGEVGQI-GPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKG 865
Query: 64 PHG-GAASGLNGCCRCGARG 82
G G NG GARG
Sbjct: 866 STGFPGFPGANG--EKGARG 883
Score = 38.9 bits (89), Expect = 0.002
Identities = 29/76 (38%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G TG GPGG P GP G G GE G G GP G + GA P
Sbjct: 967 GFQGKTGPP-GPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGP 1025
Query: 67 GAASGLNGCCRCGARG 82
SG +G G RG
Sbjct: 1026 QGISGKDG--PAGLRG 1039
Score = 38.5 bits (88), Expect = 0.003
Identities = 27/68 (39%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G GS GD G PG P G G G PG AG G GPRG GA P
Sbjct: 1147 GQKGSKGDKGENGPPG-PPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGP 1205
Query: 67 GAASGLNG 74
GL G
Sbjct: 1206 PGPIGLQG 1213
Score = 38.1 bits (87), Expect = 0.004
Identities = 33/84 (39%), Positives = 37/84 (44%), Gaps = 15/84 (17%)
Query: 6 RGTGGSTGD-----ADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGP-GGG 59
RGT G+ G DGP GP GP G G PG+ G G +G G GP G
Sbjct: 669 RGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPG-----PQGPIGPP 723
Query: 60 APRGPHGGAASGLNGCCRCGARGP 83
+GP G GL G GA GP
Sbjct: 724 GEKGPQG--KPGLAGL--PGADGP 743
Score = 38.1 bits (87), Expect = 0.004
Identities = 28/68 (41%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPGG 58
+G G G GP GP P G G G PG AG G GP G +G A GP G
Sbjct: 705 QGNPGPQG-LPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPG 763
Query: 59 GAPRGPHG 66
P+GP G
Sbjct: 764 --PQGPIG 769
Score = 38.1 bits (87), Expect = 0.004
Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 7 GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGP 64
G G+ G A PG G P GP G+ G G G G +G G G PG P+GP
Sbjct: 877 GEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSG-GDGPPGPPGERGPQGP 935
Query: 65 HG 66
G
Sbjct: 936 QG 937
Score = 38.1 bits (87), Expect = 0.004
Identities = 35/89 (39%), Positives = 40/89 (44%), Gaps = 16/89 (17%)
Query: 6 RGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPGG- 58
+G+ G G+ PG PG+ P G G AGG GE G G +G G GA GP G
Sbjct: 1149 KGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGP 1208
Query: 59 ----GAPRGPHGGAASGLNGCCRCGARGP 83
G P GP G G NG G GP
Sbjct: 1209 IGLQGLP-GPPG--EKGENG--DVGPMGP 1232
Score = 37.7 bits (86), Expect = 0.005
Identities = 33/86 (38%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 7 GTGGSTGDA--DGPGGP-GIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRG 63
G G G A DG GP G+P GP G AG PGE G G G G ++ G P G
Sbjct: 1105 GEKGPQGPAGRDGVQGPVGLP-GPAGPAGSPGEDGDKGEIGEPGQKGSKGD-KGENGPPG 1162
Query: 64 PHG-----GAASGLNGCCRCGARGPE 84
P G GA G G RG +
Sbjct: 1163 PPGLQGPVGAPGIAGGDGEPGPRGQQ 1188
Score = 37.4 bits (85), Expect = 0.007
Identities = 28/83 (33%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPGGGAP 61
+G G G+ PG G P GP G G G G G +GP+G AG A GP G
Sbjct: 690 KGNMGPQGEPGPPGQQGNP-GPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPG 748
Query: 62 RGPHGGAASGLNGCCRCGARGPE 84
+ G L G GP+
Sbjct: 749 KEGQSGEKGAL------GPPGPQ 765
Score = 37.0 bits (84), Expect = 0.009
Identities = 30/73 (41%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 7 GTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPGG--GAP 61
G G GD G GP P GP G+ G GE G G RG P AG GP G GAP
Sbjct: 616 GLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAP 675
Query: 62 RGPHGGAASGLNG 74
P G G
Sbjct: 676 GQPGMAGVDGPPG 688
Score = 36.6 bits (83), Expect = 0.012
Identities = 28/72 (38%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
Query: 6 RGTGGSTGDADGPGGP----GIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPGGG 59
+G G+ G GP GP G+P PG G G G G G GPRG GP G
Sbjct: 1194 KGDEGARG-FPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRG-----PQGPNGA 1247
Query: 60 -APRGPHGGAAS 70
P+GP G S
Sbjct: 1248 DGPQGPPGSVGS 1259
Score = 36.2 bits (82), Expect = 0.016
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 4 EGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRG 63
+G+ G GP GP GP G G PG G G +G GA A + G P+G
Sbjct: 969 QGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGA-AGKEGAKGDPGPQG 1027
Query: 64 PHG-GAASGLNG 74
G +GL G
Sbjct: 1028 ISGKDGPAGLRG 1039
Score = 35.8 bits (81), Expect = 0.020
Identities = 34/101 (33%), Positives = 39/101 (38%), Gaps = 28/101 (27%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGG------PGEAGATGGRGPRGA----------- 48
RG G G G G P GP G AG PG G G +GP+G+
Sbjct: 819 RGEDGPEGPKGRAGPTGDP-GPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANG 877
Query: 49 --GAARASG-PGGGAPRGPHGGAASGLNGCCRCGARGPESR 86
GA +G PG RGP G S GARGP +
Sbjct: 878 EKGARGVAGKPGPRGQRGPTGPRGSR-------GARGPTGK 911
Score = 35.8 bits (81), Expect = 0.020
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 6 RGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRG 63
+G GS G+ PG G+ P G G G G G G G +G G PG P G
Sbjct: 1455 KGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGI----PGPAGPLG 1510
Query: 64 PHG 66
P G
Sbjct: 1511 PPG 1513
Score = 35.0 bits (79), Expect = 0.035
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGA---TGGRGPRG-AGAARASGPGGGAPRGPHGGAASGL 72
GP GP G G GGPG +GA +G GP+G G GP G + GA G
Sbjct: 541 GPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGR 600
Query: 73 NGCCRCGARG 82
GA+G
Sbjct: 601 GMPGEPGAKG 610
Score = 35.0 bits (79), Expect = 0.035
Identities = 31/81 (38%), Positives = 34/81 (41%), Gaps = 21/81 (25%)
Query: 6 RGTGGSTGDADGPGGP-GIPDGPG-----------------GNAGGPGEAGATGGRG-PR 46
+G G+ G DGP GP G P PG G G PGE G G RG P
Sbjct: 1431 QGLPGAAGQ-DGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPG 1489
Query: 47 GAGAARASGPGG-GAPRGPHG 66
G+ A G GG P GP G
Sbjct: 1490 TQGSPGAKGDGGIPGPAGPLG 1510
Score = 34.7 bits (78), Expect = 0.045
Identities = 28/69 (40%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 6 RGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPGG- 58
RG G G PG GP GP G G PG+ G G GP G G GP G
Sbjct: 645 RGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQ 704
Query: 59 -GAPRGPHG 66
G P GP G
Sbjct: 705 QGNP-GPQG 712
Score = 34.3 bits (77), Expect = 0.059
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
+G G G+ PG G P GP G G G G G GP G+ PG +G
Sbjct: 1092 QGPPGPAGEKGAPGEKG-PQGPAGRDGVQGPVGLPGPAGPAGS-------PGEDGDKGEI 1143
Query: 66 G 66
G
Sbjct: 1144 G 1144
Score = 33.1 bits (74), Expect = 0.13
Identities = 30/89 (33%), Positives = 34/89 (38%), Gaps = 12/89 (13%)
Query: 7 GTGGSTGDADGPGGPGI--PDGPGGNAGG------PGEAGATGGRGPRGAGAARASGPGG 58
G G G A G PG+ P GP G+ G PG GA G GP G GG
Sbjct: 454 GPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGG 513
Query: 59 GAPRGPHGGA----ASGLNGCCRCGARGP 83
+GP A A + R RGP
Sbjct: 514 DGSKGPTISAQEAQAQAILQQARIALRGP 542
Score = 33.1 bits (74), Expect = 0.13
Identities = 26/64 (40%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGGAPRGP 64
RG GS G+ G PG G G G GE G G RG G G +GP G GP
Sbjct: 783 RGLKGSKGEKGEDGFPGFK-GDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDP--GP 839
Query: 65 HGGA 68
G A
Sbjct: 840 SGQA 843
Score = 32.3 bits (72), Expect = 0.23
Identities = 22/54 (40%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 16 DGPGGPGIPD---GPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
+GP GP P GP G G G G G RGP G R PG GP G
Sbjct: 453 EGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPG----RPGLPGADGLPGPPG 502
Score = 31.2 bits (69), Expect = 0.50
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAP 61
G G G + G G P GP G G PG G G G RG ++ G P
Sbjct: 745 GHPGKEGQSGEKGALG-PPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFP 798
Score = 30.0 bits (66), Expect = 1.1
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 10 GSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHGGAA 69
G+ G+ G P + + G PG AG G GP G PG RGP G
Sbjct: 432 GAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGL-QGPTGPPGDPGDRGPPG--R 488
Query: 70 SGLNGCCRCGARGPESRLL 88
GL G G GP +L
Sbjct: 489 PGLPGA--DGLPGPPGTML 505
Score = 30.0 bits (66), Expect = 1.1
Identities = 20/48 (41%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGG---PGEAGATGGRGPRGAGAA 51
G G G ADGP G +G G G PG G G GPRG A
Sbjct: 733 GLAGLPG-ADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGA 779
Score = 28.9 bits (63), Expect = 2.5
Identities = 25/72 (34%), Positives = 27/72 (37%), Gaps = 10/72 (13%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRG-------AGAARASGP- 56
G G G PG G+ DG G G GE G G G +G G GP
Sbjct: 760 GPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPR 819
Query: 57 GGGAPRGPHGGA 68
G P GP G A
Sbjct: 820 GEDGPEGPKGRA 831
Score = 28.1 bits (61), Expect = 4.3
Identities = 36/106 (33%), Positives = 41/106 (38%), Gaps = 30/106 (28%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPG--GNAGGPG-------EAGATGGRGPR-GAGAARAS- 54
+G G GD G PG P PG G G PG G G +GP A A+A
Sbjct: 471 QGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQA 530
Query: 55 ----------GPGG-----GAPRGPHGG-AASGLNGCCRCGARGPE 84
GP G G P GP GG +SG G G GP+
Sbjct: 531 ILQQARIALRGPPGPMGLTGRP-GPVGGPGSSGAKG--ESGDPGPQ 573
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 53.1 bits (126), Expect = 1e-07
Identities = 45/127 (35%), Positives = 53/127 (41%), Gaps = 29/127 (22%)
Query: 7 GTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRGA-GAARASG-P 56
G GG G+ PG PG P GP G G PG AGA G +G +GA G A A G P
Sbjct: 1291 GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP 1350
Query: 57 GGGAPRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPL 116
G P GP G A G GPE P+ + + QD PP
Sbjct: 1351 GKTGPVGPQGPA----------GKPGPEG-------LRGIPGPVGEQGLPGAAGQDGPPG 1393
Query: 117 PV--PGV 121
P+ PG+
Sbjct: 1394 PMGPPGL 1400
Score = 46.6 bits (109), Expect = 1e-05
Identities = 37/79 (46%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 3 AEGR-GTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG----AGAARASG 55
AEGR G G+ G+A G PG P GP G AG PG G G GP G GAA G
Sbjct: 1331 AEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDG 1390
Query: 56 PGGGAPRGPHGGAASGLNG 74
P G P GP G GL G
Sbjct: 1391 PPG--PMGPPG--LPGLKG 1405
Score = 46.2 bits (108), Expect = 2e-05
Identities = 35/91 (38%), Positives = 39/91 (42%), Gaps = 20/91 (21%)
Query: 6 RGTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRG----AGAARASGP 56
RG G G G PG+ P GP G G PGE G+ G GP G G GP
Sbjct: 987 RGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGP 1046
Query: 57 GG--GAP--RGPHGGAASGLNGCCRCGARGP 83
G GAP +GP G A R G +GP
Sbjct: 1047 AGEKGAPGEKGPQGPAG-------RDGVQGP 1070
Score = 45.8 bits (107), Expect = 2e-05
Identities = 34/92 (36%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 7 GTGGSTGDAD--------GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPG 57
G G GD GP GP P+G G G PG G+ GG G +G G A GP
Sbjct: 1168 GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1227
Query: 58 G----GAPRGPHG--GAASGLNGCCRCGARGP 83
G G P+G G G A GA+GP
Sbjct: 1228 GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP 1259
Score = 45.1 bits (105), Expect = 3e-05
Identities = 30/63 (47%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG-GAPRG 63
RG+ G+ G PG PG P GP G A GE GA G +GP+G AG GP G P G
Sbjct: 1023 RGSAGTAGPIGLPGRPG-PQGPPGPA---GEKGAPGEKGPQGPAGRDGVQGPVGLPGPAG 1078
Query: 64 PHG 66
P G
Sbjct: 1079 PAG 1081
Score = 45.1 bits (105), Expect = 3e-05
Identities = 34/91 (37%), Positives = 38/91 (41%), Gaps = 14/91 (15%)
Query: 6 RGTGGSTGDADGPGGPGIP-----DGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA 60
+G G G PG PG P DG GG+ G G+ G G GP G A PG
Sbjct: 1266 KGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSG----EAGPPGPPG 1321
Query: 61 PRGPHGGA-ASGLNG----CCRCGARGPESR 86
RGP G A A G G GA GP +
Sbjct: 1322 KRGPPGAAGAEGRQGEKGAKGEAGAEGPPGK 1352
Score = 43.9 bits (102), Expect = 7e-05
Identities = 27/64 (42%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 5 GRGTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPR 62
G G G G+A PG PG GP G G GEAG G GP GA PG P+
Sbjct: 1211 GVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGA----KGPPGDDGPK 1266
Query: 63 GPHG 66
G G
Sbjct: 1267 GNPG 1270
Score = 42.4 bits (98), Expect = 2e-04
Identities = 36/85 (42%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG--GAP 61
G G G PG GI DGP G G PGE G G +G G G GP G G+P
Sbjct: 961 GAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSP 1020
Query: 62 --RGPHGGAAS-GLNGCCRCGARGP 83
RG G A GL G R G +GP
Sbjct: 1021 GERGSAGTAGPIGLPG--RPGPQGP 1043
Score = 41.2 bits (95), Expect = 5e-04
Identities = 30/73 (41%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 6 RGTGGSTGDADGPGGPGIP--DGPGGN---AGGPGEAGATGGRGPRGA-GAARASG---- 55
+G G G A PG G P DGP GN G PG+ G G GP G G G
Sbjct: 1242 KGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGD 1301
Query: 56 PGGGAPRGPHGGA 68
PG P GP G A
Sbjct: 1302 PGQPGPPGPSGEA 1314
Score = 41.2 bits (95), Expect = 5e-04
Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
RG G+ G G GIP GP G G PG G G +GP+G G P G
Sbjct: 1434 RGLPGTQGSPGAKGDGGIP-GPAGPLGPPGPPGLPGPQGPKG-------NKGSTGPAGQK 1485
Query: 66 GGAASGLNGCCRCGARGPESRLLE 89
G SGL G G+ GP +++
Sbjct: 1486 GD--SGLPG--PPGSPGPPGEVIQ 1505
Score = 40.8 bits (94), Expect = 6e-04
Identities = 29/69 (42%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G G PG PG P G G G PGE G G GP G PG PRGP G
Sbjct: 1141 GQKGDEGARGFPGPPG-PIGLQGLPGPPGEKGENGDVGPMGP-------PGPPGPRGPQG 1192
Query: 67 -GAASGLNG 74
A G G
Sbjct: 1193 PNGADGPQG 1201
Score = 40.8 bits (94), Expect = 6e-04
Identities = 28/74 (37%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARAS-GPGG-----GA 60
G G G+A G GGP G G AG PG AG G +GP G + + GP G G
Sbjct: 1222 GNPGPPGEA-GVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGP 1280
Query: 61 PRGPHGGAASGLNG 74
P P G+ G
Sbjct: 1281 PGEPGPAGQDGVGG 1294
Score = 40.4 bits (93), Expect = 8e-04
Identities = 27/78 (34%), Positives = 32/78 (41%), Gaps = 16/78 (20%)
Query: 5 GRGTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGG 59
G G+ G+ G++ PG G P GP G G G GA GGRG G A+ G
Sbjct: 506 GPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDG 565
Query: 60 AP-----------RGPHG 66
P RGP G
Sbjct: 566 LPGLPGDKGHRGERGPQG 583
Score = 40.4 bits (93), Expect = 8e-04
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAP----- 61
G G+ G+ G G P GP G G G G+ G RGP G + + G G P
Sbjct: 820 GFPGANGEKGARGVAGKP-GPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGE 878
Query: 62 RGPHG 66
RGP G
Sbjct: 879 RGPQG 883
Score = 40.0 bits (92), Expect = 0.001
Identities = 32/89 (35%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 6 RGTGGSTGD-----ADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG- 58
RG G TG A GP G P G G G PG G G +GP+G G GP G
Sbjct: 840 RGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGP 899
Query: 59 ----GAPRGPHGGAASGLNGCCRCGARGP 83
G P P +G G + G GP
Sbjct: 900 PGKDGLPGHPGQRGETGFQG--KTGPPGP 926
Score = 40.0 bits (92), Expect = 0.001
Identities = 27/64 (42%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 6 RGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGG-GAPR 62
RG G G GP GP P G G G PG+ G TG +G G GPGG P+
Sbjct: 879 RGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTG-----PPGPGGVVGPQ 933
Query: 63 GPHG 66
GP G
Sbjct: 934 GPTG 937
Score = 40.0 bits (92), Expect = 0.001
Identities = 31/77 (40%), Positives = 36/77 (46%), Gaps = 19/77 (24%)
Query: 6 RGTGGSTGDADGPGGP--------GIPD-GPGGNAGGPGEAGATGGRGPRG-------AG 49
RG G G ADGP GP G+ + G G AG PG G G GP+G AG
Sbjct: 1188 RGPQGPNG-ADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAG 1246
Query: 50 AARASGPGGGAPRGPHG 66
A+GP G +GP G
Sbjct: 1247 PPGAAGPPGA--KGPPG 1261
Score = 39.7 bits (91), Expect = 0.001
Identities = 31/80 (38%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASG-PGGGAPRG 63
+G G G GP G P+GP G AG G+ G +G G +G G G PG P+G
Sbjct: 756 KGDRGEVGQI-GPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKG 814
Query: 64 PHG-GAASGLNGCCRCGARG 82
G G NG GARG
Sbjct: 815 STGFPGFPGANG--EKGARG 832
Score = 38.9 bits (89), Expect = 0.002
Identities = 29/76 (38%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G TG GPGG P GP G G GE G G GP G + GA P
Sbjct: 916 GFQGKTGPP-GPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGP 974
Query: 67 GAASGLNGCCRCGARG 82
SG +G G RG
Sbjct: 975 QGISGKDG--PAGLRG 988
Score = 38.5 bits (88), Expect = 0.003
Identities = 27/68 (39%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G GS GD G PG P G G G PG AG G GPRG GA P
Sbjct: 1096 GQKGSKGDKGENGPPG-PPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGP 1154
Query: 67 GAASGLNG 74
GL G
Sbjct: 1155 PGPIGLQG 1162
Score = 38.1 bits (87), Expect = 0.004
Identities = 33/84 (39%), Positives = 37/84 (44%), Gaps = 15/84 (17%)
Query: 6 RGTGGSTGD-----ADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGP-GGG 59
RGT G+ G DGP GP GP G G PG+ G G +G G GP G
Sbjct: 618 RGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPG-----PQGPIGPP 672
Query: 60 APRGPHGGAASGLNGCCRCGARGP 83
+GP G GL G GA GP
Sbjct: 673 GEKGPQG--KPGLAGL--PGADGP 692
Score = 38.1 bits (87), Expect = 0.004
Identities = 28/68 (41%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPGG 58
+G G G GP GP P G G G PG AG G GP G +G A GP G
Sbjct: 654 QGNPGPQG-LPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPG 712
Query: 59 GAPRGPHG 66
P+GP G
Sbjct: 713 --PQGPIG 718
Score = 38.1 bits (87), Expect = 0.004
Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 7 GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGP 64
G G+ G A PG G P GP G+ G G G G +G G G PG P+GP
Sbjct: 826 GEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSG-GDGPPGPPGERGPQGP 884
Query: 65 HG 66
G
Sbjct: 885 QG 886
Score = 38.1 bits (87), Expect = 0.004
Identities = 35/89 (39%), Positives = 40/89 (44%), Gaps = 16/89 (17%)
Query: 6 RGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPGG- 58
+G+ G G+ PG PG+ P G G AGG GE G G +G G GA GP G
Sbjct: 1098 KGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGP 1157
Query: 59 ----GAPRGPHGGAASGLNGCCRCGARGP 83
G P GP G G NG G GP
Sbjct: 1158 IGLQGLP-GPPG--EKGENG--DVGPMGP 1181
Score = 37.7 bits (86), Expect = 0.005
Identities = 33/86 (38%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 7 GTGGSTGDA--DGPGGP-GIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRG 63
G G G A DG GP G+P GP G AG PGE G G G G ++ G P G
Sbjct: 1054 GEKGPQGPAGRDGVQGPVGLP-GPAGPAGSPGEDGDKGEIGEPGQKGSKGD-KGENGPPG 1111
Query: 64 PHG-----GAASGLNGCCRCGARGPE 84
P G GA G G RG +
Sbjct: 1112 PPGLQGPVGAPGIAGGDGEPGPRGQQ 1137
Score = 37.4 bits (85), Expect = 0.007
Identities = 28/83 (33%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPGGGAP 61
+G G G+ PG G P GP G G G G G +GP+G AG A GP G
Sbjct: 639 KGNMGPQGEPGPPGQQGNP-GPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPG 697
Query: 62 RGPHGGAASGLNGCCRCGARGPE 84
+ G L G GP+
Sbjct: 698 KEGQSGEKGAL------GPPGPQ 714
Score = 37.0 bits (84), Expect = 0.009
Identities = 30/73 (41%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 7 GTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPGG--GAP 61
G G GD G GP P GP G+ G GE G G RG P AG GP G GAP
Sbjct: 565 GLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAP 624
Query: 62 RGPHGGAASGLNG 74
P G G
Sbjct: 625 GQPGMAGVDGPPG 637
Score = 36.6 bits (83), Expect = 0.012
Identities = 28/72 (38%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
Query: 6 RGTGGSTGDADGPGGP----GIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPGGG 59
+G G+ G GP GP G+P PG G G G G G GPRG GP G
Sbjct: 1143 KGDEGARG-FPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRG-----PQGPNGA 1196
Query: 60 -APRGPHGGAAS 70
P+GP G S
Sbjct: 1197 DGPQGPPGSVGS 1208
Score = 36.2 bits (82), Expect = 0.016
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 4 EGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRG 63
+G+ G GP GP GP G G PG G G +G GA A + G P+G
Sbjct: 918 QGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGA-AGKEGAKGDPGPQG 976
Query: 64 PHG-GAASGLNG 74
G +GL G
Sbjct: 977 ISGKDGPAGLRG 988
Score = 35.8 bits (81), Expect = 0.020
Identities = 34/101 (33%), Positives = 39/101 (38%), Gaps = 28/101 (27%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGG------PGEAGATGGRGPRGA----------- 48
RG G G G G P GP G AG PG G G +GP+G+
Sbjct: 768 RGEDGPEGPKGRAGPTGDP-GPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANG 826
Query: 49 --GAARASG-PGGGAPRGPHGGAASGLNGCCRCGARGPESR 86
GA +G PG RGP G S GARGP +
Sbjct: 827 EKGARGVAGKPGPRGQRGPTGPRGSR-------GARGPTGK 860
Score = 35.8 bits (81), Expect = 0.020
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 6 RGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRG 63
+G GS G+ PG G+ P G G G G G G G +G G PG P G
Sbjct: 1404 KGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGI----PGPAGPLG 1459
Query: 64 PHG 66
P G
Sbjct: 1460 PPG 1462
Score = 35.0 bits (79), Expect = 0.035
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGA---TGGRGPRG-AGAARASGPGGGAPRGPHGGAASGL 72
GP GP G G GGPG +GA +G GP+G G GP G + GA G
Sbjct: 490 GPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGR 549
Query: 73 NGCCRCGARG 82
GA+G
Sbjct: 550 GMPGEPGAKG 559
Score = 35.0 bits (79), Expect = 0.035
Identities = 31/81 (38%), Positives = 34/81 (41%), Gaps = 21/81 (25%)
Query: 6 RGTGGSTGDADGPGGP-GIPDGPG-----------------GNAGGPGEAGATGGRG-PR 46
+G G+ G DGP GP G P PG G G PGE G G RG P
Sbjct: 1380 QGLPGAAGQ-DGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPG 1438
Query: 47 GAGAARASGPGG-GAPRGPHG 66
G+ A G GG P GP G
Sbjct: 1439 TQGSPGAKGDGGIPGPAGPLG 1459
Score = 34.7 bits (78), Expect = 0.045
Identities = 28/69 (40%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 6 RGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPGG- 58
RG G G PG GP GP G G PG+ G G GP G G GP G
Sbjct: 594 RGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQ 653
Query: 59 -GAPRGPHG 66
G P GP G
Sbjct: 654 QGNP-GPQG 661
Score = 34.3 bits (77), Expect = 0.059
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
+G G G+ PG G P GP G G G G G GP G+ PG +G
Sbjct: 1041 QGPPGPAGEKGAPGEKG-PQGPAGRDGVQGPVGLPGPAGPAGS-------PGEDGDKGEI 1092
Query: 66 G 66
G
Sbjct: 1093 G 1093
Score = 33.1 bits (74), Expect = 0.13
Identities = 30/89 (33%), Positives = 34/89 (38%), Gaps = 12/89 (13%)
Query: 7 GTGGSTGDADGPGGPGI--PDGPGGNAGG------PGEAGATGGRGPRGAGAARASGPGG 58
G G G A G PG+ P GP G+ G PG GA G GP G GG
Sbjct: 403 GPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGG 462
Query: 59 GAPRGPHGGA----ASGLNGCCRCGARGP 83
+GP A A + R RGP
Sbjct: 463 DGSKGPTISAQEAQAQAILQQARIALRGP 491
Score = 33.1 bits (74), Expect = 0.13
Identities = 26/64 (40%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGGAPRGP 64
RG GS G+ G PG G G G GE G G RG G G +GP G GP
Sbjct: 732 RGLKGSKGEKGEDGFPGFK-GDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDP--GP 788
Query: 65 HGGA 68
G A
Sbjct: 789 SGQA 792
Score = 32.3 bits (72), Expect = 0.23
Identities = 22/54 (40%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 16 DGPGGPGIPD---GPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
+GP GP P GP G G G G G RGP G R PG GP G
Sbjct: 402 EGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPG----RPGLPGADGLPGPPG 451
Score = 31.2 bits (69), Expect = 0.50
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAP 61
G G G + G G P GP G G PG G G G RG ++ G P
Sbjct: 694 GHPGKEGQSGEKGALG-PPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFP 747
Score = 30.0 bits (66), Expect = 1.1
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 10 GSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHGGAA 69
G+ G+ G P + + G PG AG G GP G PG RGP G
Sbjct: 381 GAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGL-QGPTGPPGDPGDRGPPG--R 437
Query: 70 SGLNGCCRCGARGPESRLL 88
GL G G GP +L
Sbjct: 438 PGLPGA--DGLPGPPGTML 454
Score = 30.0 bits (66), Expect = 1.1
Identities = 20/48 (41%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGG---PGEAGATGGRGPRGAGAA 51
G G G ADGP G +G G G PG G G GPRG A
Sbjct: 682 GLAGLPG-ADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGA 728
Score = 28.9 bits (63), Expect = 2.5
Identities = 25/72 (34%), Positives = 27/72 (37%), Gaps = 10/72 (13%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRG-------AGAARASGP- 56
G G G PG G+ DG G G GE G G G +G G GP
Sbjct: 709 GPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPR 768
Query: 57 GGGAPRGPHGGA 68
G P GP G A
Sbjct: 769 GEDGPEGPKGRA 780
Score = 28.1 bits (61), Expect = 4.3
Identities = 36/106 (33%), Positives = 41/106 (38%), Gaps = 30/106 (28%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPG--GNAGGPG-------EAGATGGRGPR-GAGAARAS- 54
+G G GD G PG P PG G G PG G G +GP A A+A
Sbjct: 420 QGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQA 479
Query: 55 ----------GPGG-----GAPRGPHGG-AASGLNGCCRCGARGPE 84
GP G G P GP GG +SG G G GP+
Sbjct: 480 ILQQARIALRGPPGPMGLTGRP-GPVGGPGSSGAKG--ESGDPGPQ 522
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 53.1 bits (126), Expect = 1e-07
Identities = 45/127 (35%), Positives = 53/127 (41%), Gaps = 29/127 (22%)
Query: 7 GTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRGA-GAARASG-P 56
G GG G+ PG PG P GP G G PG AGA G +G +GA G A A G P
Sbjct: 1330 GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP 1389
Query: 57 GGGAPRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPL 116
G P GP G A G GPE P+ + + QD PP
Sbjct: 1390 GKTGPVGPQGPA----------GKPGPEG-------LRGIPGPVGEQGLPGAAGQDGPPG 1432
Query: 117 PV--PGV 121
P+ PG+
Sbjct: 1433 PMGPPGL 1439
Score = 46.6 bits (109), Expect = 1e-05
Identities = 37/79 (46%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 3 AEGR-GTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG----AGAARASG 55
AEGR G G+ G+A G PG P GP G AG PG G G GP G GAA G
Sbjct: 1370 AEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDG 1429
Query: 56 PGGGAPRGPHGGAASGLNG 74
P G P GP G GL G
Sbjct: 1430 PPG--PMGPPG--LPGLKG 1444
Score = 46.2 bits (108), Expect = 2e-05
Identities = 35/91 (38%), Positives = 39/91 (42%), Gaps = 20/91 (21%)
Query: 6 RGTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRG----AGAARASGP 56
RG G G G PG+ P GP G G PGE G+ G GP G G GP
Sbjct: 1026 RGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGP 1085
Query: 57 GG--GAP--RGPHGGAASGLNGCCRCGARGP 83
G GAP +GP G A R G +GP
Sbjct: 1086 AGEKGAPGEKGPQGPAG-------RDGVQGP 1109
Score = 45.8 bits (107), Expect = 2e-05
Identities = 34/92 (36%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 7 GTGGSTGDAD--------GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPG 57
G G GD GP GP P+G G G PG G+ GG G +G G A GP
Sbjct: 1207 GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1266
Query: 58 G----GAPRGPHG--GAASGLNGCCRCGARGP 83
G G P+G G G A GA+GP
Sbjct: 1267 GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP 1298
Score = 45.1 bits (105), Expect = 3e-05
Identities = 30/63 (47%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG-GAPRG 63
RG+ G+ G PG PG P GP G A GE GA G +GP+G AG GP G P G
Sbjct: 1062 RGSAGTAGPIGLPGRPG-PQGPPGPA---GEKGAPGEKGPQGPAGRDGVQGPVGLPGPAG 1117
Query: 64 PHG 66
P G
Sbjct: 1118 PAG 1120
Score = 45.1 bits (105), Expect = 3e-05
Identities = 34/91 (37%), Positives = 38/91 (41%), Gaps = 14/91 (15%)
Query: 6 RGTGGSTGDADGPGGPGIP-----DGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA 60
+G G G PG PG P DG GG+ G G+ G G GP G A PG
Sbjct: 1305 KGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSG----EAGPPGPPG 1360
Query: 61 PRGPHGGA-ASGLNG----CCRCGARGPESR 86
RGP G A A G G GA GP +
Sbjct: 1361 KRGPPGAAGAEGRQGEKGAKGEAGAEGPPGK 1391
Score = 43.9 bits (102), Expect = 7e-05
Identities = 27/64 (42%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 5 GRGTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPR 62
G G G G+A PG PG GP G G GEAG G GP GA PG P+
Sbjct: 1250 GVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGA----KGPPGDDGPK 1305
Query: 63 GPHG 66
G G
Sbjct: 1306 GNPG 1309
Score = 42.4 bits (98), Expect = 2e-04
Identities = 36/85 (42%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG--GAP 61
G G G PG GI DGP G G PGE G G +G G G GP G G+P
Sbjct: 1000 GAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSP 1059
Query: 62 --RGPHGGAAS-GLNGCCRCGARGP 83
RG G A GL G R G +GP
Sbjct: 1060 GERGSAGTAGPIGLPG--RPGPQGP 1082
Score = 41.2 bits (95), Expect = 5e-04
Identities = 30/73 (41%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 6 RGTGGSTGDADGPGGPGIP--DGPGGN---AGGPGEAGATGGRGPRGA-GAARASG---- 55
+G G G A PG G P DGP GN G PG+ G G GP G G G
Sbjct: 1281 KGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGD 1340
Query: 56 PGGGAPRGPHGGA 68
PG P GP G A
Sbjct: 1341 PGQPGPPGPSGEA 1353
Score = 41.2 bits (95), Expect = 5e-04
Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
RG G+ G G GIP GP G G PG G G +GP+G G P G
Sbjct: 1473 RGLPGTQGSPGAKGDGGIP-GPAGPLGPPGPPGLPGPQGPKG-------NKGSTGPAGQK 1524
Query: 66 GGAASGLNGCCRCGARGPESRLLE 89
G SGL G G+ GP +++
Sbjct: 1525 GD--SGLPG--PPGSPGPPGEVIQ 1544
Score = 40.8 bits (94), Expect = 6e-04
Identities = 29/69 (42%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G G PG PG P G G G PGE G G GP G PG PRGP G
Sbjct: 1180 GQKGDEGARGFPGPPG-PIGLQGLPGPPGEKGENGDVGPMGP-------PGPPGPRGPQG 1231
Query: 67 -GAASGLNG 74
A G G
Sbjct: 1232 PNGADGPQG 1240
Score = 40.8 bits (94), Expect = 6e-04
Identities = 28/74 (37%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARAS-GPGG-----GA 60
G G G+A G GGP G G AG PG AG G +GP G + + GP G G
Sbjct: 1261 GNPGPPGEA-GVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGP 1319
Query: 61 PRGPHGGAASGLNG 74
P P G+ G
Sbjct: 1320 PGEPGPAGQDGVGG 1333
Score = 40.4 bits (93), Expect = 8e-04
Identities = 27/78 (34%), Positives = 32/78 (41%), Gaps = 16/78 (20%)
Query: 5 GRGTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGG 59
G G+ G+ G++ PG G P GP G G G GA GGRG G A+ G
Sbjct: 545 GPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDG 604
Query: 60 AP-----------RGPHG 66
P RGP G
Sbjct: 605 LPGLPGDKGHRGERGPQG 622
Score = 40.4 bits (93), Expect = 8e-04
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAP----- 61
G G+ G+ G G P GP G G G G+ G RGP G + + G G P
Sbjct: 859 GFPGANGEKGARGVAGKP-GPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGE 917
Query: 62 RGPHG 66
RGP G
Sbjct: 918 RGPQG 922
Score = 40.0 bits (92), Expect = 0.001
Identities = 32/89 (35%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 6 RGTGGSTGD-----ADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG- 58
RG G TG A GP G P G G G PG G G +GP+G G GP G
Sbjct: 879 RGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGP 938
Query: 59 ----GAPRGPHGGAASGLNGCCRCGARGP 83
G P P +G G + G GP
Sbjct: 939 PGKDGLPGHPGQRGETGFQG--KTGPPGP 965
Score = 40.0 bits (92), Expect = 0.001
Identities = 27/64 (42%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 6 RGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGG-GAPR 62
RG G G GP GP P G G G PG+ G TG +G G GPGG P+
Sbjct: 918 RGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTG-----PPGPGGVVGPQ 972
Query: 63 GPHG 66
GP G
Sbjct: 973 GPTG 976
Score = 40.0 bits (92), Expect = 0.001
Identities = 31/77 (40%), Positives = 36/77 (46%), Gaps = 19/77 (24%)
Query: 6 RGTGGSTGDADGPGGP--------GIPD-GPGGNAGGPGEAGATGGRGPRG-------AG 49
RG G G ADGP GP G+ + G G AG PG G G GP+G AG
Sbjct: 1227 RGPQGPNG-ADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAG 1285
Query: 50 AARASGPGGGAPRGPHG 66
A+GP G +GP G
Sbjct: 1286 PPGAAGPPGA--KGPPG 1300
Score = 39.7 bits (91), Expect = 0.001
Identities = 31/80 (38%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASG-PGGGAPRG 63
+G G G GP G P+GP G AG G+ G +G G +G G G PG P+G
Sbjct: 795 KGDRGEVGQI-GPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKG 853
Query: 64 PHG-GAASGLNGCCRCGARG 82
G G NG GARG
Sbjct: 854 STGFPGFPGANG--EKGARG 871
Score = 38.9 bits (89), Expect = 0.002
Identities = 29/76 (38%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G TG GPGG P GP G G GE G G GP G + GA P
Sbjct: 955 GFQGKTGPP-GPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGP 1013
Query: 67 GAASGLNGCCRCGARG 82
SG +G G RG
Sbjct: 1014 QGISGKDG--PAGLRG 1027
Score = 38.5 bits (88), Expect = 0.003
Identities = 27/68 (39%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G GS GD G PG P G G G PG AG G GPRG GA P
Sbjct: 1135 GQKGSKGDKGENGPPG-PPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGP 1193
Query: 67 GAASGLNG 74
GL G
Sbjct: 1194 PGPIGLQG 1201
Score = 38.1 bits (87), Expect = 0.004
Identities = 33/84 (39%), Positives = 37/84 (44%), Gaps = 15/84 (17%)
Query: 6 RGTGGSTGD-----ADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGP-GGG 59
RGT G+ G DGP GP GP G G PG+ G G +G G GP G
Sbjct: 657 RGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPG-----PQGPIGPP 711
Query: 60 APRGPHGGAASGLNGCCRCGARGP 83
+GP G GL G GA GP
Sbjct: 712 GEKGPQG--KPGLAGL--PGADGP 731
Score = 38.1 bits (87), Expect = 0.004
Identities = 28/68 (41%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPGG 58
+G G G GP GP P G G G PG AG G GP G +G A GP G
Sbjct: 693 QGNPGPQG-LPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPG 751
Query: 59 GAPRGPHG 66
P+GP G
Sbjct: 752 --PQGPIG 757
Score = 38.1 bits (87), Expect = 0.004
Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 7 GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGP 64
G G+ G A PG G P GP G+ G G G G +G G G PG P+GP
Sbjct: 865 GEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSG-GDGPPGPPGERGPQGP 923
Query: 65 HG 66
G
Sbjct: 924 QG 925
Score = 38.1 bits (87), Expect = 0.004
Identities = 35/89 (39%), Positives = 40/89 (44%), Gaps = 16/89 (17%)
Query: 6 RGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPGG- 58
+G+ G G+ PG PG+ P G G AGG GE G G +G G GA GP G
Sbjct: 1137 KGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGP 1196
Query: 59 ----GAPRGPHGGAASGLNGCCRCGARGP 83
G P GP G G NG G GP
Sbjct: 1197 IGLQGLP-GPPG--EKGENG--DVGPMGP 1220
Score = 37.7 bits (86), Expect = 0.005
Identities = 33/86 (38%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 7 GTGGSTGDA--DGPGGP-GIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRG 63
G G G A DG GP G+P GP G AG PGE G G G G ++ G P G
Sbjct: 1093 GEKGPQGPAGRDGVQGPVGLP-GPAGPAGSPGEDGDKGEIGEPGQKGSKGD-KGENGPPG 1150
Query: 64 PHG-----GAASGLNGCCRCGARGPE 84
P G GA G G RG +
Sbjct: 1151 PPGLQGPVGAPGIAGGDGEPGPRGQQ 1176
Score = 37.4 bits (85), Expect = 0.007
Identities = 28/83 (33%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPGGGAP 61
+G G G+ PG G P GP G G G G G +GP+G AG A GP G
Sbjct: 678 KGNMGPQGEPGPPGQQGNP-GPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPG 736
Query: 62 RGPHGGAASGLNGCCRCGARGPE 84
+ G L G GP+
Sbjct: 737 KEGQSGEKGAL------GPPGPQ 753
Score = 37.0 bits (84), Expect = 0.009
Identities = 30/73 (41%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 7 GTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPGG--GAP 61
G G GD G GP P GP G+ G GE G G RG P AG GP G GAP
Sbjct: 604 GLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAP 663
Query: 62 RGPHGGAASGLNG 74
P G G
Sbjct: 664 GQPGMAGVDGPPG 676
Score = 36.6 bits (83), Expect = 0.012
Identities = 28/72 (38%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
Query: 6 RGTGGSTGDADGPGGP----GIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPGGG 59
+G G+ G GP GP G+P PG G G G G G GPRG GP G
Sbjct: 1182 KGDEGARG-FPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRG-----PQGPNGA 1235
Query: 60 -APRGPHGGAAS 70
P+GP G S
Sbjct: 1236 DGPQGPPGSVGS 1247
Score = 36.2 bits (82), Expect = 0.016
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 4 EGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRG 63
+G+ G GP GP GP G G PG G G +G GA A + G P+G
Sbjct: 957 QGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGA-AGKEGAKGDPGPQG 1015
Query: 64 PHG-GAASGLNG 74
G +GL G
Sbjct: 1016 ISGKDGPAGLRG 1027
Score = 35.8 bits (81), Expect = 0.020
Identities = 34/101 (33%), Positives = 39/101 (38%), Gaps = 28/101 (27%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGG------PGEAGATGGRGPRGA----------- 48
RG G G G G P GP G AG PG G G +GP+G+
Sbjct: 807 RGEDGPEGPKGRAGPTGDP-GPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANG 865
Query: 49 --GAARASG-PGGGAPRGPHGGAASGLNGCCRCGARGPESR 86
GA +G PG RGP G S GARGP +
Sbjct: 866 EKGARGVAGKPGPRGQRGPTGPRGSR-------GARGPTGK 899
Score = 35.8 bits (81), Expect = 0.020
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 6 RGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRG 63
+G GS G+ PG G+ P G G G G G G G +G G PG P G
Sbjct: 1443 KGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGI----PGPAGPLG 1498
Query: 64 PHG 66
P G
Sbjct: 1499 PPG 1501
Score = 35.0 bits (79), Expect = 0.035
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGA---TGGRGPRG-AGAARASGPGGGAPRGPHGGAASGL 72
GP GP G G GGPG +GA +G GP+G G GP G + GA G
Sbjct: 529 GPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGR 588
Query: 73 NGCCRCGARG 82
GA+G
Sbjct: 589 GMPGEPGAKG 598
Score = 35.0 bits (79), Expect = 0.035
Identities = 31/81 (38%), Positives = 34/81 (41%), Gaps = 21/81 (25%)
Query: 6 RGTGGSTGDADGPGGP-GIPDGPG-----------------GNAGGPGEAGATGGRG-PR 46
+G G+ G DGP GP G P PG G G PGE G G RG P
Sbjct: 1419 QGLPGAAGQ-DGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPG 1477
Query: 47 GAGAARASGPGG-GAPRGPHG 66
G+ A G GG P GP G
Sbjct: 1478 TQGSPGAKGDGGIPGPAGPLG 1498
Score = 34.7 bits (78), Expect = 0.045
Identities = 28/69 (40%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 6 RGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPGG- 58
RG G G PG GP GP G G PG+ G G GP G G GP G
Sbjct: 633 RGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQ 692
Query: 59 -GAPRGPHG 66
G P GP G
Sbjct: 693 QGNP-GPQG 700
Score = 34.3 bits (77), Expect = 0.059
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
+G G G+ PG G P GP G G G G G GP G+ PG +G
Sbjct: 1080 QGPPGPAGEKGAPGEKG-PQGPAGRDGVQGPVGLPGPAGPAGS-------PGEDGDKGEI 1131
Query: 66 G 66
G
Sbjct: 1132 G 1132
Score = 33.1 bits (74), Expect = 0.13
Identities = 30/89 (33%), Positives = 34/89 (38%), Gaps = 12/89 (13%)
Query: 7 GTGGSTGDADGPGGPGI--PDGPGGNAGG------PGEAGATGGRGPRGAGAARASGPGG 58
G G G A G PG+ P GP G+ G PG GA G GP G GG
Sbjct: 442 GPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGG 501
Query: 59 GAPRGPHGGA----ASGLNGCCRCGARGP 83
+GP A A + R RGP
Sbjct: 502 DGSKGPTISAQEAQAQAILQQARIALRGP 530
Score = 33.1 bits (74), Expect = 0.13
Identities = 26/64 (40%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGGAPRGP 64
RG GS G+ G PG G G G GE G G RG G G +GP G GP
Sbjct: 771 RGLKGSKGEKGEDGFPGFK-GDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDP--GP 827
Query: 65 HGGA 68
G A
Sbjct: 828 SGQA 831
Score = 32.3 bits (72), Expect = 0.23
Identities = 22/54 (40%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 16 DGPGGPGIPD---GPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
+GP GP P GP G G G G G RGP G R PG GP G
Sbjct: 441 EGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPG----RPGLPGADGLPGPPG 490
Score = 31.2 bits (69), Expect = 0.50
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAP 61
G G G + G G P GP G G PG G G G RG ++ G P
Sbjct: 733 GHPGKEGQSGEKGALG-PPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFP 786
Score = 30.0 bits (66), Expect = 1.1
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 10 GSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHGGAA 69
G+ G+ G P + + G PG AG G GP G PG RGP G
Sbjct: 420 GAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGL-QGPTGPPGDPGDRGPPG--R 476
Query: 70 SGLNGCCRCGARGPESRLL 88
GL G G GP +L
Sbjct: 477 PGLPGA--DGLPGPPGTML 493
Score = 30.0 bits (66), Expect = 1.1
Identities = 20/48 (41%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGG---PGEAGATGGRGPRGAGAA 51
G G G ADGP G +G G G PG G G GPRG A
Sbjct: 721 GLAGLPG-ADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGA 767
Score = 28.9 bits (63), Expect = 2.5
Identities = 25/72 (34%), Positives = 27/72 (37%), Gaps = 10/72 (13%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRG-------AGAARASGP- 56
G G G PG G+ DG G G GE G G G +G G GP
Sbjct: 748 GPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPR 807
Query: 57 GGGAPRGPHGGA 68
G P GP G A
Sbjct: 808 GEDGPEGPKGRA 819
Score = 28.1 bits (61), Expect = 4.3
Identities = 36/106 (33%), Positives = 41/106 (38%), Gaps = 30/106 (28%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPG--GNAGGPG-------EAGATGGRGPR-GAGAARAS- 54
+G G GD G PG P PG G G PG G G +GP A A+A
Sbjct: 459 QGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQA 518
Query: 55 ----------GPGG-----GAPRGPHGG-AASGLNGCCRCGARGPE 84
GP G G P GP GG +SG G G GP+
Sbjct: 519 ILQQARIALRGPPGPMGLTGRP-GPVGGPGSSGAKG--ESGDPGPQ 561
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 53.1 bits (126), Expect = 1e-07
Identities = 43/118 (36%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
Query: 5 GRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGP 64
G+G G G PG PG P G G+ G PG G+ G RG G G A GP G P G
Sbjct: 464 GKGKDGEPGLRGSPGLPG-PLGTKGDRGAPGIPGSPGSRGDPGIGVAGPPGPSG--PPGD 520
Query: 65 HGGAAS-GLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPGV 121
G S GL G G +GP R +P + L + + D PP P PG+
Sbjct: 521 KGSPGSRGLPGF--PGPQGPAGR----DGLSSLLSPGDINLLAKDVCNDCPPGP-PGL 571
Score = 49.7 bits (117), Expect = 1e-06
Identities = 34/83 (40%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 6 RGTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRG 63
RG G G G PG+P GP GN G PG G G GP G PG P G
Sbjct: 620 RGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGI----QGSPGKEGPPG 675
Query: 64 PHGGAASGLNGCCRCGARGPESR 86
P G SGL G G G E R
Sbjct: 676 PQG--PSGLPGI--PGEEGKEGR 694
Score = 47.8 bits (112), Expect = 5e-06
Identities = 34/75 (45%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 7 GTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRG-AGAARASG-PGGG 59
G G+ G A PG PG P GP G+ G PG G G G RG GAA G PG
Sbjct: 389 GAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPV 448
Query: 60 APRGPHGGAASGLNG 74
PRG G A GL G
Sbjct: 449 GPRGDPG--APGLPG 461
Score = 43.5 bits (101), Expect = 1e-04
Identities = 28/68 (41%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGP------GGNAGGPGEAGATGGRGPRGAGAARASG--PGG 58
G G GD GP GP P GP G+ G PGE G +G G +G+ S PG
Sbjct: 750 GLPGKDGDT-GPTGPQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGF 808
Query: 59 GAPRGPHG 66
PRGP G
Sbjct: 809 LGPRGPPG 816
Score = 42.0 bits (97), Expect = 3e-04
Identities = 29/70 (41%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGG--GAPRGP 64
G G G+ PG G+ +GP G G GE GA G G G G GP G G P G
Sbjct: 959 GRAGPMGEPGRPGQGGL-EGPSGPIGPKGERGAKGDPGAPGVGLRGEMGPPGIPGQP-GE 1016
Query: 65 HGGAASGLNG 74
G A GL G
Sbjct: 1017 PGYAKDGLPG 1026
Score = 41.2 bits (95), Expect = 5e-04
Identities = 31/79 (39%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 6 RGTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRGAGAARASG-P 56
+G G GD PG PG+ P GP G G G+ GA G P AG A G
Sbjct: 349 QGPKGEKGDPGLPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHG--APGAAGNPGAPGHV 406
Query: 57 GGGAPRGPHGG-AASGLNG 74
G P GP G A GL G
Sbjct: 407 GAPGPSGPPGSVGAPGLRG 425
Score = 41.2 bits (95), Expect = 5e-04
Identities = 28/66 (42%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGA-GAARASG-PGGGAPR 62
G G TG G G PG GN G PG GA G GP G+ GA G PG R
Sbjct: 374 GPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGER 433
Query: 63 GPHGGA 68
G G A
Sbjct: 434 GEKGAA 439
Score = 41.2 bits (95), Expect = 5e-04
Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGP 64
G G TGD+ PG G G G G PG+ G TG GP+G R G+P P
Sbjct: 723 GFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSP 782
Query: 65 HGGAASGLNG 74
SG G
Sbjct: 783 GEPGPSGTPG 792
Score = 41.2 bits (95), Expect = 5e-04
Identities = 26/61 (42%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
RG G GD PGG G P G+ G PG G TG GP+G PG P GP
Sbjct: 842 RGDPGIKGDKGPPGGKGQP----GDPGIPGHKGHTGLMGPQGL-------PGENGPVGPP 890
Query: 66 G 66
G
Sbjct: 891 G 891
Score = 39.7 bits (91), Expect = 0.001
Identities = 24/55 (43%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 7 GTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG 58
G G G+A PG PG P G G+ G GE G G +G RG G A +GP G
Sbjct: 277 GRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGELGLPGLKGDRGEKGEAGPAGPPG 331
Score = 39.7 bits (91), Expect = 0.001
Identities = 30/72 (41%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 4 EGR----GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASG--- 55
EGR G G G A PG PG P+G G G G G +G GPRG +GA G
Sbjct: 692 EGRDGKPGPPGEPGKAGEPGLPG-PEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEG 750
Query: 56 -PGGGAPRGPHG 66
PG GP G
Sbjct: 751 LPGKDGDTGPTG 762
Score = 38.5 bits (88), Expect = 0.003
Identities = 32/97 (32%), Positives = 37/97 (38%), Gaps = 19/97 (19%)
Query: 6 RGTGGSTGDADGPGGPGIP---------------DGPGGNAGGPGEAGATGGRG-PRGAG 49
+G G G+A G PG+P GP G G PG G G +G P G
Sbjct: 315 KGDRGEKGEAGPAGPPGLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELG 374
Query: 50 AARASG-PGGGAPRGPHG--GAASGLNGCCRCGARGP 83
+G PG G HG GAA GA GP
Sbjct: 375 PQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGP 411
Score = 38.5 bits (88), Expect = 0.003
Identities = 35/96 (36%), Positives = 38/96 (39%), Gaps = 16/96 (16%)
Query: 2 QAEGRGTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRG----AGAARASG 55
Q +G G G PG PG P DG G AG PG G+ G GP G +G G
Sbjct: 628 QKGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPG 687
Query: 56 PGG--------GAPRGPHGGAASGLNGCCRCGARGP 83
G G P P GL G GARGP
Sbjct: 688 EEGKEGRDGKPGPPGEPGKAGEPGLPG--PEGARGP 721
Score = 38.5 bits (88), Expect = 0.003
Identities = 31/82 (37%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G +G PG G+P G G+ G G G G RGP G + S PG P G G
Sbjct: 735 GPRGESGAMGLPGQEGLP-GKDGDTGPTGPQGPQGPRGPPGKNGSPGS-PGEPGPSGTPG 792
Query: 67 GAAS-GLNGCCR----CGARGP 83
S G NG G RGP
Sbjct: 793 QKGSKGENGSPGLPGFLGPRGP 814
Score = 38.5 bits (88), Expect = 0.003
Identities = 25/66 (37%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 7 GTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAP 61
G GS G+ PG PG P G G G PG+ G G G G R PG
Sbjct: 792 GQKGSKGENGSPGLPGFLGPRGPPGEPGEKGVPGKEGVPGKPGEPGFKGERGD-PGIKGD 850
Query: 62 RGPHGG 67
+GP GG
Sbjct: 851 KGPPGG 856
Score = 38.1 bits (87), Expect = 0.004
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 18 PGGPGIPDGPG--GNAGGPGEAGATGGRGPRG-AGAARASGPGG-GAPRGPHG 66
PG PG+P PG G+ G PG+ G G G +G AG GP G P+G G
Sbjct: 566 PGPPGLPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPGPPGIAGPQGSQG 618
Score = 37.4 bits (85), Expect = 0.007
Identities = 25/74 (33%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRGAGAARASGPGGGA 60
RG G G PG PG PG G G PG G G RGP G + G
Sbjct: 770 RGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGPRGPPGEPGEKGVPGKEGV 829
Query: 61 PRGPHGGAASGLNG 74
P P G G
Sbjct: 830 PGKPGEPGFKGERG 843
Score = 37.0 bits (84), Expect = 0.009
Identities = 33/94 (35%), Positives = 35/94 (37%), Gaps = 22/94 (23%)
Query: 7 GTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRGA-GAARASGPG 57
G G GD PG PG GP G G PG AG G +G RGA G G
Sbjct: 573 GLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEVGQKGDQ 632
Query: 58 G--------GAPRGPHGGAASGLNGCCRCGARGP 83
G G P P A G+ GA GP
Sbjct: 633 GHPGVPGFMGPPGNPGPPGADGI-----AGAAGP 661
Score = 36.6 bits (83), Expect = 0.012
Identities = 27/69 (39%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G G+ G G P GP G G GE G G G RG + GAP GP G
Sbjct: 681 GLPGIPGEEGKEGRDGKP-GPPGEPGKAGEPGLPGPEGARGPPGFKGHTGDSGAP-GPRG 738
Query: 67 -GAASGLNG 74
A GL G
Sbjct: 739 ESGAMGLPG 747
Score = 35.0 bits (79), Expect = 0.035
Identities = 23/60 (38%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGP 64
G G G PG PG PG G G PGE G G RG G + G G P P
Sbjct: 804 GLPGFLGPRGPPGEPGEKGVPGKEGVPGKPGEPGFKGERGDPGIKGDKGPPGGKGQPGDP 863
Score = 34.7 bits (78), Expect = 0.045
Identities = 30/82 (36%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASG----PGGGAP 61
RGT G G+ G G +G G G G+ GA G GP G G G PG P
Sbjct: 424 RGTPGKDGERGEKGAAG-EEGSPGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSPGLPGP 482
Query: 62 RGPHGG-AASGLNGCCRCGARG 82
G G A G+ G G+RG
Sbjct: 483 LGTKGDRGAPGIPG--SPGSRG 502
Score = 34.3 bits (77), Expect = 0.059
Identities = 28/66 (42%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHGGAASGLNGCC 76
GP GP DG G AG GE G G G G SGP G P+G G A G G
Sbjct: 947 GPPGPPGKDGLPGRAGPMGEPGRPGQGGLEG-----PSGPIG--PKGERG--AKGDPGAP 997
Query: 77 RCGARG 82
G RG
Sbjct: 998 GVGLRG 1003
Score = 34.3 bits (77), Expect = 0.059
Identities = 26/69 (37%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 7 GTGGSTGDADGPGGPGI----PDGPGGNAGGPGEA-----GATGGRGPRGAGAARASGPG 57
G G G PG PG+ GP G G PGE G G GP+G A PG
Sbjct: 983 GPKGERGAKGDPGAPGVGLRGEMGPPGIPGQPGEPGYAKDGLPGIPGPQGE-TGPAGHPG 1041
Query: 58 GGAPRGPHG 66
P GP G
Sbjct: 1042 LPGPPGPPG 1050
Score = 33.9 bits (76), Expect = 0.077
Identities = 28/76 (36%), Positives = 30/76 (39%), Gaps = 16/76 (21%)
Query: 7 GTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRG-------PRGAGAA 51
G G+ G A G PGI P GP G +G PG G G G P G A
Sbjct: 648 GPPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKA 707
Query: 52 RASG-PGGGAPRGPHG 66
G PG RGP G
Sbjct: 708 GEPGLPGPEGARGPPG 723
Score = 33.5 bits (75), Expect = 0.10
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 6 RGTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGA---TGGRGPRGAGAAR----ASGP 56
+ + G G PG G+P GP G G PG+ G +G GP+G A+ A G
Sbjct: 940 KSSQGRPGPPGPPGKDGLPGRAGPMGEPGRPGQGGLEGPSGPIGPKGERGAKGDPGAPGV 999
Query: 57 GGGAPRGPHG 66
G GP G
Sbjct: 1000 GLRGEMGPPG 1009
Score = 32.7 bits (73), Expect = 0.17
Identities = 29/76 (38%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPGGG 59
G GG G + GP GP G G+ G PG G G GP G G A+ PG
Sbjct: 971 GQGGLEGPS-GPIGPKGERGAKGDPGAPG-VGLRGEMGPPGIPGQPGEPGYAKDGLPGIP 1028
Query: 60 APRGPHGGAA-SGLNG 74
P+G G A GL G
Sbjct: 1029 GPQGETGPAGHPGLPG 1044
Score = 32.0 bits (71), Expect = 0.29
Identities = 29/85 (34%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGA---ARASGPGGGAPRG 63
G G GD G G+P G G+ G GEAG G G G + PG P+G
Sbjct: 295 GVRGEKGDQGEKGELGLP-GLKGDRGEKGEAGPAGPPGLPGTTSLFTPHPRMPGEQGPKG 353
Query: 64 PHGG----AASGLNGCCRCGARGPE 84
G GL G R G GP+
Sbjct: 354 EKGDPGLPGEPGLQG--RPGELGPQ 376
Score = 30.0 bits (66), Expect = 1.1
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 17/56 (30%)
Query: 6 RGTGGSTGDADGPGGPGIP-----------------DGPGGNAGGPGEAGATGGRG 44
+G G G PG PGIP +GP G G PG+ G G RG
Sbjct: 848 KGDKGPPGGKGQPGDPGIPGHKGHTGLMGPQGLPGENGPVGPPGPPGQPGFPGLRG 903
Score = 27.3 bits (59), Expect = 7.3
Identities = 23/73 (31%), Positives = 26/73 (35%), Gaps = 18/73 (24%)
Query: 3 AEGRGTGGSTGDADGPGGPGIPD----------------GPGGNAGGPGEAGATGGRGPR 46
A G G G G PG PG P GP G+ G PG G G P
Sbjct: 996 APGVGLRGEMGPPGIPGQPGEPGYAKDGLPGIPGPQGETGPAGHPGLPGPPGPPGQCDPS 1055
Query: 47 GAG--AARASGPG 57
A+ A+ PG
Sbjct: 1056 QCAYFASLAARPG 1068
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 52.8 bits (125), Expect = 2e-07
Identities = 36/79 (45%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRG-AGAARASGPGGG 59
+G G TG PG PG P PG G G GEAGA G GP G AGA GP G
Sbjct: 1055 KGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQG- 1113
Query: 60 APRGPHGGAAS----GLNG 74
PRG G A GL G
Sbjct: 1114 -PRGDKGEAGEPGERGLKG 1131
Score = 52.4 bits (124), Expect = 2e-07
Identities = 36/79 (45%), Positives = 38/79 (48%), Gaps = 17/79 (21%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPG---------EAGATGGRGPRGAGAARASGPG 57
G G+ G+ DG GP P GP G AGGPG EAG TG RGP G A GP
Sbjct: 339 GAAGARGN-DGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEG-----AQGPR 392
Query: 58 G--GAPRGPHGGAASGLNG 74
G G P P ASG G
Sbjct: 393 GEPGTPGSPGPAGASGNPG 411
Score = 48.1 bits (113), Expect = 4e-06
Identities = 45/125 (36%), Positives = 49/125 (39%), Gaps = 42/125 (33%)
Query: 2 QAEGRGTGGSTGDADGPGGPGIP-----------DG-------PG--GNAGGPGEAGATG 41
+A RG G G PG PG+P DG PG G +G PGE G+ G
Sbjct: 262 KAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPG 321
Query: 42 GRGPRG----------AGAARASG----PGGGAPRGPHG--------GAASGLNGCCRCG 79
GPRG AGAA A G PG P GP G GA G
Sbjct: 322 PMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTG 381
Query: 80 ARGPE 84
ARGPE
Sbjct: 382 ARGPE 386
Score = 47.4 bits (111), Expect = 7e-06
Identities = 33/90 (36%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 7 GTGGSTGD--ADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAAR--------ASGP 56
G G +GD A GP GP P GP G G G+ GA G GP G R A P
Sbjct: 1143 GPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPP 1202
Query: 57 GGGAPRGPHGGAASGLNGCCRCGARGPESR 86
G P GP G G++ G GP +
Sbjct: 1203 GNPGPPGPPGPPGPGIDMSAFAGL-GPREK 1231
Score = 47.0 bits (110), Expect = 9e-06
Identities = 35/79 (44%), Positives = 36/79 (45%), Gaps = 14/79 (17%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPGGG 59
GT G G A GP GP GP G G PGE GA G GP+G G A G GG
Sbjct: 726 GTDGPKG-ASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGG 784
Query: 60 ----APRGPHGGAASGLNG 74
P GP G A G NG
Sbjct: 785 RGLTGPIGPPGPA--GANG 801
Score = 47.0 bits (110), Expect = 9e-06
Identities = 43/116 (37%), Positives = 47/116 (40%), Gaps = 18/116 (15%)
Query: 2 QAEGRGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRG----------PRGAG 49
+A +G G +G A G GP P G G AG PGE G G RG P +G
Sbjct: 1090 EAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSG 1149
Query: 50 AARASGPGG-GAPRGPHG----GAASGLNGC-CRCGARGPESRLLEFYLAMPFATP 99
ASGP G PRGP G G NG G GP R E A P P
Sbjct: 1150 DQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNP 1205
Score = 46.6 bits (109), Expect = 1e-05
Identities = 35/83 (42%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 3 AEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGG-A 60
A RG G G+ GP GP GP G G PG G G G +G AGA GP G
Sbjct: 815 AGARGAPGERGET-GPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPG 873
Query: 61 PRGPHGGAASGLNGCCRCGARGP 83
P+GP G +G G GA+GP
Sbjct: 874 PQGPTG--VTGPKGA--RGAQGP 892
Score = 46.6 bits (109), Expect = 1e-05
Identities = 43/116 (37%), Positives = 49/116 (42%), Gaps = 18/116 (15%)
Query: 3 AEGR-GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA------------- 48
A+G+ G G G+A G G P GP G +G PG G TG GP+GA
Sbjct: 841 ADGQPGAKGEQGEAGQKGDAGAP-GPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP 899
Query: 49 GAARASGPGG--GAPRGPHGGAASGLNGCCRC-GARGPESRLLEFYLAMPFATPME 101
GAA GP G G P P SG +G G GP R E L P P E
Sbjct: 900 GAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGE 955
Score = 46.2 bits (108), Expect = 2e-05
Identities = 31/69 (44%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG----PRGAGAARASG----PG 57
+G G TG A GP G P G G G PG AGA+G G P G+A A G PG
Sbjct: 374 KGEAGPTG-ARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPG 432
Query: 58 GGAPRGPHG 66
PRGP G
Sbjct: 433 FPGPRGPPG 441
Score = 45.1 bits (105), Expect = 3e-05
Identities = 31/78 (39%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 9 GGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPGG--GAPRGPH 65
G G GP GP P GP G AG PG G G G P G + GP G G P P
Sbjct: 193 GAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPG 252
Query: 66 GGAASGLNGCCRCGARGP 83
+G G + G RGP
Sbjct: 253 DDGEAGKPG--KAGERGP 268
Score = 44.7 bits (104), Expect = 4e-05
Identities = 32/92 (34%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 6 RGTGGSTGDADGPGGPGI-----------PDGPGGNAGGPGEAGATGGRGPRG----AGA 50
+G+ G+ G A PG PG P GP G G PG AG G +GP+G AG
Sbjct: 419 KGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGP 478
Query: 51 ARASGPGGGAPRGPHGGAASGLNGCCRCGARG 82
A GP G + G G+ G RG
Sbjct: 479 QGAPGPAGEEGKRGARGEPGGVGPIGPPGERG 510
Score = 44.7 bits (104), Expect = 4e-05
Identities = 35/91 (38%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPGG------ 58
+G G++GD GP GP P G G AG PG G+ G GP G GAA G G
Sbjct: 1007 QGAPGASGDR-GPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVG 1065
Query: 59 --GAPRGPHGGAASGLNG----CCRCGARGP 83
GAP P +G G GA+GP
Sbjct: 1066 APGAPGPPGSPGPAGPTGKQGDRGEAGAQGP 1096
Score = 44.3 bits (103), Expect = 6e-05
Identities = 34/86 (39%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRGAGA--ARASGPGG 58
RG G+ G + G PG P PG G+ G PGEAGA G GPRG PG
Sbjct: 653 RGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGA 712
Query: 59 GAPRGPHG-GAASGLNGCCRCGARGP 83
+GP G G +G GA GP
Sbjct: 713 QGLQGPRGLPGTPGTDG--PKGASGP 736
Score = 43.9 bits (102), Expect = 7e-05
Identities = 32/88 (36%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGE------AGATGGRGPRGAGAARASGPGGG 59
RG G G GP GP G GN G PG+ GA G RGP G + + G
Sbjct: 491 RGARGEPGGV-GPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPG 549
Query: 60 APRGPHGGAASGLNGCCRCGARGPESRL 87
P P A GL G R G GP+ ++
Sbjct: 550 RPGEPGLPGARGLTG--RPGDAGPQGKV 575
Score = 43.1 bits (100), Expect = 1e-04
Identities = 29/68 (42%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 6 RGTGGSTGDADGPG---GPGI--PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA 60
RG G G PG G G+ P GP G AG GE G G GP G+ AR + PG
Sbjct: 767 RGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGA-PGERG 825
Query: 61 PRGPHGGA 68
GP G A
Sbjct: 826 ETGPPGPA 833
Score = 42.7 bits (99), Expect = 2e-04
Identities = 33/77 (42%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASG-------PGG 58
G G GD DGP G P GP G AG G G G RG RG G SG PG
Sbjct: 954 GEKGEPGD-DGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGA 1012
Query: 59 GAPRGPHGGAA-SGLNG 74
RGP G GL G
Sbjct: 1013 SGDRGPPGPVGPPGLTG 1029
Score = 42.4 bits (98), Expect = 2e-04
Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAG---GPGEAGATGGRGPRGAGAARASGPGGGAPR 62
+G G D GP GP P GP G G G+ G G GPRG + PG P
Sbjct: 106 KGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGT-PGNPGPP 164
Query: 63 GPHG 66
GP G
Sbjct: 165 GPPG 168
Score = 42.4 bits (98), Expect = 2e-04
Identities = 27/68 (39%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG--------AGAARASGPGG 58
G G G A PG P G GN G PGE G +G GPRG A PG
Sbjct: 207 GPRGPPGPAGAPG----PQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGK 262
Query: 59 GAPRGPHG 66
RGP G
Sbjct: 263 AGERGPPG 270
Score = 42.4 bits (98), Expect = 2e-04
Identities = 37/92 (40%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 5 GRGTGGSTGD-----ADGPGGPGIPDGPGGNA---GGPGEAGATGGRGPRG-AGAARASG 55
GRG G G A+G G P GP G+A G PGE G TG GP G AG A G
Sbjct: 784 GRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADG 843
Query: 56 -PGGGAPRGPHG--GAASGLNGCCRCGARGPE 84
PG +G G G A GA GP+
Sbjct: 844 QPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQ 875
Score = 40.8 bits (94), Expect = 6e-04
Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G+ G+ GP G P G G+ G PGE G G RG G PG P+G G
Sbjct: 525 GPKGAPGER-GPSGLAGPKGANGDPGRPGEPGLPGARGLTGR-------PGDAGPQGKVG 576
Query: 67 -GAASGLNGCCRCGARGPE 84
A G +G R G GP+
Sbjct: 577 PSGAPGEDG--RPGPPGPQ 593
Score = 40.4 bits (93), Expect = 8e-04
Identities = 36/106 (33%), Positives = 42/106 (39%), Gaps = 31/106 (29%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--------------GNAGGPGEAGATGGRGPRGA---- 48
G G+ GD PG PG+P G G +G PGE G G GP+GA
Sbjct: 540 GPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQP 599
Query: 49 ------GAARASG-PGGGAPRGPHGGAASGLNGC----CRCGARGP 83
G A+G PG +G G A GL G GA GP
Sbjct: 600 GVMGFPGPKGANGEPGKAGEKGLPG--APGLRGLPGKDGETGAAGP 643
Score = 40.4 bits (93), Expect = 8e-04
Identities = 33/83 (39%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGG--GAPRG 63
RG G G+ PG G+ GP G G PG G G GP AG A GP G G P G
Sbjct: 698 RGERGFPGERGSPGAQGL-QGPRGLPGTPGTDGPKGASGP--AGPPGAQGPPGLQGMP-G 753
Query: 64 PHG--GAASGLNGCCRCGARGPE 84
G G A G +GPE
Sbjct: 754 ERGAAGIAGPKGDRGDVGEKGPE 776
Score = 40.0 bits (92), Expect = 0.001
Identities = 28/79 (35%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
RG G G+ PG G DG G G PG G G GP G G A+ GG
Sbjct: 134 RGDRGDKGEKGAPGPRG-RDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAG 192
Query: 66 GGAASGLNG-CCRCGARGP 83
G + G G RGP
Sbjct: 193 GAQLGVMQGPMGPMGPRGP 211
Score = 40.0 bits (92), Expect = 0.001
Identities = 26/65 (40%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 3 AEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPGGGAP 61
A G+ G GP GP +G G G PG AG+ G RG P G GP G A
Sbjct: 778 APGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFA- 836
Query: 62 RGPHG 66
GP G
Sbjct: 837 -GPPG 840
Score = 40.0 bits (92), Expect = 0.001
Identities = 33/76 (43%), Positives = 37/76 (48%), Gaps = 13/76 (17%)
Query: 3 AEGR-GTGGSTGDADGPGGPGIP---DGP---GGNAGGPGEAGATGGRGPRG----AGAA 51
A GR G GS G+ GP GP P DGP G++G PG AG G +GP G G
Sbjct: 901 AAGRVGPPGSNGNP-GPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEP 959
Query: 52 RASGPGGG-APRGPHG 66
GP G P GP G
Sbjct: 960 GDDGPSGAEGPPGPQG 975
Score = 39.7 bits (91), Expect = 0.001
Identities = 30/68 (44%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATG------GRGPRGAGAARASGPGG 58
GT GS G A G PG PG G+AG PG AGA G GP+G A+GP G
Sbjct: 396 GTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQG-----ATGPLG 450
Query: 59 GAPRGPHG 66
P+G G
Sbjct: 451 --PKGQTG 456
Score = 39.3 bits (90), Expect = 0.002
Identities = 28/74 (37%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 6 RGTGGSTGD--ADGPGGPGIPDGPGGNAGGPGEA---GATGGRGPRGAGAARASGPGGGA 60
+G G G+ GP GP P GP G G GEA G G RGP G AR G
Sbjct: 224 QGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGL 283
Query: 61 PRGPHGGAASGLNG 74
P GL+G
Sbjct: 284 PGVKGHRGYPGLDG 297
Score = 39.3 bits (90), Expect = 0.002
Identities = 32/79 (40%), Positives = 34/79 (43%), Gaps = 14/79 (17%)
Query: 7 GTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGA------TGGRGPRG-AGAARASGP- 56
G GG GD PG G P GP G G PGE G+ +GPRG G GP
Sbjct: 675 GEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGL---QGPRGLPGTPGTDGPK 731
Query: 57 GGGAPRGPHGG-AASGLNG 74
G P GP G GL G
Sbjct: 732 GASGPAGPPGAQGPPGLQG 750
Score = 39.3 bits (90), Expect = 0.002
Identities = 29/76 (38%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AG-AARASGPGG 58
G G G+ PG PG P G G G PG +G G GP G AG R PG
Sbjct: 984 GLPGQRGERGFPGLPG-PSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGA 1042
Query: 59 GAPRGPHGGAASGLNG 74
P G G A+G+ G
Sbjct: 1043 DGPPGRDG--AAGVKG 1056
Score = 38.9 bits (89), Expect = 0.002
Identities = 32/87 (36%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 6 RGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAAR--ASGPGGGAP 61
RG G G A PG GP P G G G G +GA G GP+G R PG
Sbjct: 932 RGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGE 991
Query: 62 RG----PHGGAASGLNGC-CRCGARGP 83
RG P G G G RGP
Sbjct: 992 RGFPGLPGPSGEPGKQGAPGASGDRGP 1018
Score = 38.1 bits (87), Expect = 0.004
Identities = 33/101 (32%), Positives = 37/101 (36%), Gaps = 21/101 (20%)
Query: 7 GTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG----------AGAARAS 54
G G G+A PG G P GP G G PG G G +G RG AGA
Sbjct: 249 GKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVK 308
Query: 55 GPGGG-------APRGPHG--GAASGLNGCCRCGARGPESR 86
G G P GP G G GARG + +
Sbjct: 309 GESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQ 349
Score = 38.1 bits (87), Expect = 0.004
Identities = 29/72 (40%), Positives = 31/72 (43%), Gaps = 12/72 (16%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPG---------EAGATGGRGPRG-AGAARASG 55
RG G+ G PG PG P GP G +G PG AGA G G G G G
Sbjct: 383 RGPEGAQGPRGEPGTPGSP-GPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPG 441
Query: 56 P-GGGAPRGPHG 66
P G P GP G
Sbjct: 442 PQGATGPLGPKG 453
Score = 37.7 bits (86), Expect = 0.005
Identities = 32/84 (38%), Positives = 35/84 (41%), Gaps = 16/84 (19%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGP------RGAGAARA------ 53
+G G G+ GP GP GP G G G G GG GP RGA R
Sbjct: 464 KGEQGPKGEP-GPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDG 522
Query: 54 -SGP-GGGAPRGPHGGAA-SGLNG 74
+GP G RGP G A G NG
Sbjct: 523 LAGPKGAPGERGPSGLAGPKGANG 546
Score = 37.7 bits (86), Expect = 0.005
Identities = 22/45 (48%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPG-EAGATGGRGPRGAG 49
RG G TG A PG PG P PG GPG + A G GPR G
Sbjct: 1190 RGRSGETGPAGPPGNPGPPGPPG--PPGPGIDMSAFAGLGPREKG 1232
Score = 37.4 bits (85), Expect = 0.007
Identities = 28/86 (32%), Positives = 30/86 (34%), Gaps = 9/86 (10%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--------GNAGGPGEAGATGGRGPRGAGAARASGPGG 58
G G G A GPG PG P G G G G G G G G A +
Sbjct: 354 GPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTD 413
Query: 59 GAPRGPHGGAASGLNGCCRC-GARGP 83
G P A G+ G G RGP
Sbjct: 414 GIPGAKGSAGAPGIAGAPGFPGPRGP 439
Score = 36.2 bits (82), Expect = 0.016
Identities = 26/64 (40%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPGGGAPR 62
G G+ G G PG P G G G GE G G G RG G A+GP G P
Sbjct: 591 GPQGARGQPGVMGFPG-PKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPG--PA 647
Query: 63 GPHG 66
GP G
Sbjct: 648 GPAG 651
Score = 36.2 bits (82), Expect = 0.016
Identities = 30/85 (35%), Positives = 33/85 (38%), Gaps = 17/85 (20%)
Query: 7 GTGGSTGDADGPGGPGI--------------PDGPGGNAGGPGEAGATGGRGPRG-AGAA 51
G G G+ PG PG+ P GP G AG GE GA G G +G G
Sbjct: 612 GEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPP 671
Query: 52 RASGPGG--GAPRGPHGGAASGLNG 74
G GG G P A GL G
Sbjct: 672 GPPGEGGKPGDQGVPGEAGAPGLVG 696
Score = 35.0 bits (79), Expect = 0.035
Identities = 39/101 (38%), Positives = 39/101 (38%), Gaps = 28/101 (27%)
Query: 6 RGTGGSTGDADGPGGPG--IPDGP---GGN-----AGGPGE----------AGATGGRGP 45
RG G G PG PG P GP GGN AGG E G G GP
Sbjct: 149 RGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGP 208
Query: 46 RG-AGAARASGPGG--GAPRGPHGGAASGLNGCCRCGARGP 83
RG G A A GP G G P P SG G RGP
Sbjct: 209 RGPPGPAGAPGPQGFQGNPGEPGEPGVSG-----PMGPRGP 244
Score = 34.7 bits (78), Expect = 0.045
Identities = 27/66 (40%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGG-APRGP 64
G G+ G A GP G G G G PG+ G G GP G G A A+G G P GP
Sbjct: 753 GERGAAGIA-GPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGP 811
Query: 65 HGGAAS 70
G A +
Sbjct: 812 AGSAGA 817
Score = 33.9 bits (76), Expect = 0.077
Identities = 28/75 (37%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 3 AEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG--G 59
A G G G PG GP G G G AG G RG RG G A GP G G
Sbjct: 94 ATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDG 153
Query: 60 APRGPHGGAASGLNG 74
P P G G
Sbjct: 154 EPGTPGNPGPPGPPG 168
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 52.8 bits (125), Expect = 2e-07
Identities = 36/79 (45%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRG-AGAARASGPGGG 59
+G G TG PG PG P PG G G GEAGA G GP G AGA GP G
Sbjct: 986 KGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQG- 1044
Query: 60 APRGPHGGAAS----GLNG 74
PRG G A GL G
Sbjct: 1045 -PRGDKGEAGEPGERGLKG 1062
Score = 52.4 bits (124), Expect = 2e-07
Identities = 36/79 (45%), Positives = 38/79 (48%), Gaps = 17/79 (21%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPG---------EAGATGGRGPRGAGAARASGPG 57
G G+ G+ DG GP P GP G AGGPG EAG TG RGP G A GP
Sbjct: 270 GAAGARGN-DGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEG-----AQGPR 323
Query: 58 G--GAPRGPHGGAASGLNG 74
G G P P ASG G
Sbjct: 324 GEPGTPGSPGPAGASGNPG 342
Score = 48.1 bits (113), Expect = 4e-06
Identities = 45/125 (36%), Positives = 49/125 (39%), Gaps = 42/125 (33%)
Query: 2 QAEGRGTGGSTGDADGPGGPGIP-----------DG-------PG--GNAGGPGEAGATG 41
+A RG G G PG PG+P DG PG G +G PGE G+ G
Sbjct: 193 KAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPG 252
Query: 42 GRGPRG----------AGAARASG----PGGGAPRGPHG--------GAASGLNGCCRCG 79
GPRG AGAA A G PG P GP G GA G
Sbjct: 253 PMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTG 312
Query: 80 ARGPE 84
ARGPE
Sbjct: 313 ARGPE 317
Score = 47.4 bits (111), Expect = 7e-06
Identities = 33/90 (36%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 7 GTGGSTGD--ADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAAR--------ASGP 56
G G +GD A GP GP P GP G G G+ GA G GP G R A P
Sbjct: 1074 GPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPP 1133
Query: 57 GGGAPRGPHGGAASGLNGCCRCGARGPESR 86
G P GP G G++ G GP +
Sbjct: 1134 GNPGPPGPPGPPGPGIDMSAFAGL-GPREK 1162
Score = 47.0 bits (110), Expect = 9e-06
Identities = 35/79 (44%), Positives = 36/79 (45%), Gaps = 14/79 (17%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPGGG 59
GT G G A GP GP GP G G PGE GA G GP+G G A G GG
Sbjct: 657 GTDGPKG-ASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGG 715
Query: 60 ----APRGPHGGAASGLNG 74
P GP G A G NG
Sbjct: 716 RGLTGPIGPPGPA--GANG 732
Score = 47.0 bits (110), Expect = 9e-06
Identities = 43/116 (37%), Positives = 47/116 (40%), Gaps = 18/116 (15%)
Query: 2 QAEGRGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRG----------PRGAG 49
+A +G G +G A G GP P G G AG PGE G G RG P +G
Sbjct: 1021 EAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSG 1080
Query: 50 AARASGPGG-GAPRGPHG----GAASGLNGC-CRCGARGPESRLLEFYLAMPFATP 99
ASGP G PRGP G G NG G GP R E A P P
Sbjct: 1081 DQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNP 1136
Score = 46.6 bits (109), Expect = 1e-05
Identities = 35/83 (42%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 3 AEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGG-A 60
A RG G G+ GP GP GP G G PG G G G +G AGA GP G
Sbjct: 746 AGARGAPGERGET-GPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPG 804
Query: 61 PRGPHGGAASGLNGCCRCGARGP 83
P+GP G +G G GA+GP
Sbjct: 805 PQGPTG--VTGPKGA--RGAQGP 823
Score = 46.6 bits (109), Expect = 1e-05
Identities = 43/116 (37%), Positives = 49/116 (42%), Gaps = 18/116 (15%)
Query: 3 AEGR-GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA------------- 48
A+G+ G G G+A G G P GP G +G PG G TG GP+GA
Sbjct: 772 ADGQPGAKGEQGEAGQKGDAGAP-GPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP 830
Query: 49 GAARASGPGG--GAPRGPHGGAASGLNGCCRC-GARGPESRLLEFYLAMPFATPME 101
GAA GP G G P P SG +G G GP R E L P P E
Sbjct: 831 GAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGE 886
Score = 46.2 bits (108), Expect = 2e-05
Identities = 31/69 (44%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG----PRGAGAARASG----PG 57
+G G TG A GP G P G G G PG AGA+G G P G+A A G PG
Sbjct: 305 KGEAGPTG-ARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPG 363
Query: 58 GGAPRGPHG 66
PRGP G
Sbjct: 364 FPGPRGPPG 372
Score = 45.1 bits (105), Expect = 3e-05
Identities = 31/78 (39%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 9 GGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPGG--GAPRGPH 65
G G GP GP P GP G AG PG G G G P G + GP G G P P
Sbjct: 124 GAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPG 183
Query: 66 GGAASGLNGCCRCGARGP 83
+G G + G RGP
Sbjct: 184 DDGEAGKPG--KAGERGP 199
Score = 44.7 bits (104), Expect = 4e-05
Identities = 32/92 (34%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 6 RGTGGSTGDADGPGGPGI-----------PDGPGGNAGGPGEAGATGGRGPRG----AGA 50
+G+ G+ G A PG PG P GP G G PG AG G +GP+G AG
Sbjct: 350 KGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGP 409
Query: 51 ARASGPGGGAPRGPHGGAASGLNGCCRCGARG 82
A GP G + G G+ G RG
Sbjct: 410 QGAPGPAGEEGKRGARGEPGGVGPIGPPGERG 441
Score = 44.7 bits (104), Expect = 4e-05
Identities = 35/91 (38%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPGG------ 58
+G G++GD GP GP P G G AG PG G+ G GP G GAA G G
Sbjct: 938 QGAPGASGDR-GPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVG 996
Query: 59 --GAPRGPHGGAASGLNG----CCRCGARGP 83
GAP P +G G GA+GP
Sbjct: 997 APGAPGPPGSPGPAGPTGKQGDRGEAGAQGP 1027
Score = 44.3 bits (103), Expect = 6e-05
Identities = 34/86 (39%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRGAGA--ARASGPGG 58
RG G+ G + G PG P PG G+ G PGEAGA G GPRG PG
Sbjct: 584 RGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGA 643
Query: 59 GAPRGPHG-GAASGLNGCCRCGARGP 83
+GP G G +G GA GP
Sbjct: 644 QGLQGPRGLPGTPGTDG--PKGASGP 667
Score = 43.9 bits (102), Expect = 7e-05
Identities = 32/88 (36%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGE------AGATGGRGPRGAGAARASGPGGG 59
RG G G GP GP G GN G PG+ GA G RGP G + + G
Sbjct: 422 RGARGEPGGV-GPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPG 480
Query: 60 APRGPHGGAASGLNGCCRCGARGPESRL 87
P P A GL G R G GP+ ++
Sbjct: 481 RPGEPGLPGARGLTG--RPGDAGPQGKV 506
Score = 43.1 bits (100), Expect = 1e-04
Identities = 29/68 (42%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 6 RGTGGSTGDADGPG---GPGI--PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA 60
RG G G PG G G+ P GP G AG GE G G GP G+ AR + PG
Sbjct: 698 RGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGA-PGERG 756
Query: 61 PRGPHGGA 68
GP G A
Sbjct: 757 ETGPPGPA 764
Score = 42.7 bits (99), Expect = 2e-04
Identities = 33/77 (42%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASG-------PGG 58
G G GD DGP G P GP G AG G G G RG RG G SG PG
Sbjct: 885 GEKGEPGD-DGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGA 943
Query: 59 GAPRGPHGGAA-SGLNG 74
RGP G GL G
Sbjct: 944 SGDRGPPGPVGPPGLTG 960
Score = 42.4 bits (98), Expect = 2e-04
Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAG---GPGEAGATGGRGPRGAGAARASGPGGGAPR 62
+G G D GP GP P GP G G G+ G G GPRG + PG P
Sbjct: 37 KGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGT-PGNPGPP 95
Query: 63 GPHG 66
GP G
Sbjct: 96 GPPG 99
Score = 42.4 bits (98), Expect = 2e-04
Identities = 27/68 (39%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG--------AGAARASGPGG 58
G G G A PG P G GN G PGE G +G GPRG A PG
Sbjct: 138 GPRGPPGPAGAPG----PQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGK 193
Query: 59 GAPRGPHG 66
RGP G
Sbjct: 194 AGERGPPG 201
Score = 42.4 bits (98), Expect = 2e-04
Identities = 37/92 (40%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 5 GRGTGGSTGD-----ADGPGGPGIPDGPGGNA---GGPGEAGATGGRGPRG-AGAARASG 55
GRG G G A+G G P GP G+A G PGE G TG GP G AG A G
Sbjct: 715 GRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADG 774
Query: 56 -PGGGAPRGPHG--GAASGLNGCCRCGARGPE 84
PG +G G G A GA GP+
Sbjct: 775 QPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQ 806
Score = 40.8 bits (94), Expect = 6e-04
Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G+ G+ GP G P G G+ G PGE G G RG G PG P+G G
Sbjct: 456 GPKGAPGER-GPSGLAGPKGANGDPGRPGEPGLPGARGLTGR-------PGDAGPQGKVG 507
Query: 67 -GAASGLNGCCRCGARGPE 84
A G +G R G GP+
Sbjct: 508 PSGAPGEDG--RPGPPGPQ 524
Score = 40.4 bits (93), Expect = 8e-04
Identities = 36/106 (33%), Positives = 42/106 (39%), Gaps = 31/106 (29%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--------------GNAGGPGEAGATGGRGPRGA---- 48
G G+ GD PG PG+P G G +G PGE G G GP+GA
Sbjct: 471 GPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQP 530
Query: 49 ------GAARASG-PGGGAPRGPHGGAASGLNGC----CRCGARGP 83
G A+G PG +G G A GL G GA GP
Sbjct: 531 GVMGFPGPKGANGEPGKAGEKGLPG--APGLRGLPGKDGETGAAGP 574
Score = 40.4 bits (93), Expect = 8e-04
Identities = 33/83 (39%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGG--GAPRG 63
RG G G+ PG G+ GP G G PG G G GP AG A GP G G P G
Sbjct: 629 RGERGFPGERGSPGAQGL-QGPRGLPGTPGTDGPKGASGP--AGPPGAQGPPGLQGMP-G 684
Query: 64 PHG--GAASGLNGCCRCGARGPE 84
G G A G +GPE
Sbjct: 685 ERGAAGIAGPKGDRGDVGEKGPE 707
Score = 40.0 bits (92), Expect = 0.001
Identities = 28/79 (35%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
RG G G+ PG G DG G G PG G G GP G G A+ GG
Sbjct: 65 RGDRGDKGEKGAPGPRG-RDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAG 123
Query: 66 GGAASGLNG-CCRCGARGP 83
G + G G RGP
Sbjct: 124 GAQLGVMQGPMGPMGPRGP 142
Score = 40.0 bits (92), Expect = 0.001
Identities = 26/65 (40%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 3 AEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPGGGAP 61
A G+ G GP GP +G G G PG AG+ G RG P G GP G A
Sbjct: 709 APGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFA- 767
Query: 62 RGPHG 66
GP G
Sbjct: 768 -GPPG 771
Score = 40.0 bits (92), Expect = 0.001
Identities = 33/76 (43%), Positives = 37/76 (48%), Gaps = 13/76 (17%)
Query: 3 AEGR-GTGGSTGDADGPGGPGIP---DGP---GGNAGGPGEAGATGGRGPRG----AGAA 51
A GR G GS G+ GP GP P DGP G++G PG AG G +GP G G
Sbjct: 832 AAGRVGPPGSNGNP-GPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEP 890
Query: 52 RASGPGGG-APRGPHG 66
GP G P GP G
Sbjct: 891 GDDGPSGAEGPPGPQG 906
Score = 39.7 bits (91), Expect = 0.001
Identities = 30/68 (44%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATG------GRGPRGAGAARASGPGG 58
GT GS G A G PG PG G+AG PG AGA G GP+G A+GP G
Sbjct: 327 GTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQG-----ATGPLG 381
Query: 59 GAPRGPHG 66
P+G G
Sbjct: 382 --PKGQTG 387
Score = 39.3 bits (90), Expect = 0.002
Identities = 28/74 (37%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 6 RGTGGSTGD--ADGPGGPGIPDGPGGNAGGPGEA---GATGGRGPRGAGAARASGPGGGA 60
+G G G+ GP GP P GP G G GEA G G RGP G AR G
Sbjct: 155 QGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGL 214
Query: 61 PRGPHGGAASGLNG 74
P GL+G
Sbjct: 215 PGVKGHRGYPGLDG 228
Score = 39.3 bits (90), Expect = 0.002
Identities = 32/79 (40%), Positives = 34/79 (43%), Gaps = 14/79 (17%)
Query: 7 GTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGA------TGGRGPRG-AGAARASGP- 56
G GG GD PG G P GP G G PGE G+ +GPRG G GP
Sbjct: 606 GEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGL---QGPRGLPGTPGTDGPK 662
Query: 57 GGGAPRGPHGG-AASGLNG 74
G P GP G GL G
Sbjct: 663 GASGPAGPPGAQGPPGLQG 681
Score = 39.3 bits (90), Expect = 0.002
Identities = 29/76 (38%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AG-AARASGPGG 58
G G G+ PG PG P G G G PG +G G GP G AG R PG
Sbjct: 915 GLPGQRGERGFPGLPG-PSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGA 973
Query: 59 GAPRGPHGGAASGLNG 74
P G G A+G+ G
Sbjct: 974 DGPPGRDG--AAGVKG 987
Score = 38.9 bits (89), Expect = 0.002
Identities = 32/87 (36%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 6 RGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAAR--ASGPGGGAP 61
RG G G A PG GP P G G G G +GA G GP+G R PG
Sbjct: 863 RGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGE 922
Query: 62 RG----PHGGAASGLNGC-CRCGARGP 83
RG P G G G RGP
Sbjct: 923 RGFPGLPGPSGEPGKQGAPGASGDRGP 949
Score = 38.1 bits (87), Expect = 0.004
Identities = 33/101 (32%), Positives = 37/101 (36%), Gaps = 21/101 (20%)
Query: 7 GTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG----------AGAARAS 54
G G G+A PG G P GP G G PG G G +G RG AGA
Sbjct: 180 GKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVK 239
Query: 55 GPGGG-------APRGPHG--GAASGLNGCCRCGARGPESR 86
G G P GP G G GARG + +
Sbjct: 240 GESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQ 280
Score = 38.1 bits (87), Expect = 0.004
Identities = 29/72 (40%), Positives = 31/72 (43%), Gaps = 12/72 (16%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPG---------EAGATGGRGPRG-AGAARASG 55
RG G+ G PG PG P GP G +G PG AGA G G G G G
Sbjct: 314 RGPEGAQGPRGEPGTPGSP-GPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPG 372
Query: 56 P-GGGAPRGPHG 66
P G P GP G
Sbjct: 373 PQGATGPLGPKG 384
Score = 37.7 bits (86), Expect = 0.005
Identities = 32/84 (38%), Positives = 35/84 (41%), Gaps = 16/84 (19%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGP------RGAGAARA------ 53
+G G G+ GP GP GP G G G G GG GP RGA R
Sbjct: 395 KGEQGPKGEP-GPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDG 453
Query: 54 -SGP-GGGAPRGPHGGAA-SGLNG 74
+GP G RGP G A G NG
Sbjct: 454 LAGPKGAPGERGPSGLAGPKGANG 477
Score = 37.7 bits (86), Expect = 0.005
Identities = 22/45 (48%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPG-EAGATGGRGPRGAG 49
RG G TG A PG PG P PG GPG + A G GPR G
Sbjct: 1121 RGRSGETGPAGPPGNPGPPGPPG--PPGPGIDMSAFAGLGPREKG 1163
Score = 37.4 bits (85), Expect = 0.007
Identities = 28/86 (32%), Positives = 30/86 (34%), Gaps = 9/86 (10%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--------GNAGGPGEAGATGGRGPRGAGAARASGPGG 58
G G G A GPG PG P G G G G G G G G A +
Sbjct: 285 GPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTD 344
Query: 59 GAPRGPHGGAASGLNGCCRC-GARGP 83
G P A G+ G G RGP
Sbjct: 345 GIPGAKGSAGAPGIAGAPGFPGPRGP 370
Score = 36.2 bits (82), Expect = 0.016
Identities = 26/64 (40%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPGGGAPR 62
G G+ G G PG P G G G GE G G G RG G A+GP G P
Sbjct: 522 GPQGARGQPGVMGFPG-PKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPG--PA 578
Query: 63 GPHG 66
GP G
Sbjct: 579 GPAG 582
Score = 36.2 bits (82), Expect = 0.016
Identities = 30/85 (35%), Positives = 33/85 (38%), Gaps = 17/85 (20%)
Query: 7 GTGGSTGDADGPGGPGI--------------PDGPGGNAGGPGEAGATGGRGPRG-AGAA 51
G G G+ PG PG+ P GP G AG GE GA G G +G G
Sbjct: 543 GEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPP 602
Query: 52 RASGPGG--GAPRGPHGGAASGLNG 74
G GG G P A GL G
Sbjct: 603 GPPGEGGKPGDQGVPGEAGAPGLVG 627
Score = 35.0 bits (79), Expect = 0.035
Identities = 39/101 (38%), Positives = 39/101 (38%), Gaps = 28/101 (27%)
Query: 6 RGTGGSTGDADGPGGPG--IPDGP---GGN-----AGGPGE----------AGATGGRGP 45
RG G G PG PG P GP GGN AGG E G G GP
Sbjct: 80 RGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGP 139
Query: 46 RG-AGAARASGPGG--GAPRGPHGGAASGLNGCCRCGARGP 83
RG G A A GP G G P P SG G RGP
Sbjct: 140 RGPPGPAGAPGPQGFQGNPGEPGEPGVSG-----PMGPRGP 175
Score = 34.7 bits (78), Expect = 0.045
Identities = 27/66 (40%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGG-APRGP 64
G G+ G A GP G G G G PG+ G G GP G G A A+G G P GP
Sbjct: 684 GERGAAGIA-GPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGP 742
Query: 65 HGGAAS 70
G A +
Sbjct: 743 AGSAGA 748
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 52.4 bits (124), Expect = 2e-07
Identities = 36/106 (33%), Positives = 41/106 (38%), Gaps = 30/106 (28%)
Query: 7 GTGGSTGDADGPGGPGI--------------PDGPGGNAGGPGEAGATGGRGPRGAGAAR 52
G G G+ PG PGI P GP G G PG+ G GG+G RGA +
Sbjct: 774 GQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEK 833
Query: 53 ASG--------PGGGAPRGPHG--------GAASGLNGCCRCGARG 82
G PGG P GP G G+ G GARG
Sbjct: 834 GEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARG 879
Score = 52.0 bits (123), Expect = 3e-07
Identities = 31/64 (48%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPG---EAGATGGRGPRGAGAARASGPGGGAPRG 63
GTGG G+ PG PG P G G G PG +AGA G RGP G A GG P G
Sbjct: 645 GTGGPPGENGKPGEPG-PKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGL-RGGAGPPG 702
Query: 64 PHGG 67
P GG
Sbjct: 703 PEGG 706
Score = 50.4 bits (119), Expect = 8e-07
Identities = 34/81 (41%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRG 63
RG+ G G A PG G+P PG GN G PG +G+ G GP G A PG G
Sbjct: 863 RGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGP-AGNTGAPGSPGVSG 921
Query: 64 PHGGAAS-GLNGCCRCGARGP 83
P G A G G GA+GP
Sbjct: 922 PKGDAGQPGEKG--SPGAQGP 940
Score = 48.9 bits (115), Expect = 2e-06
Identities = 39/84 (46%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 5 GRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG--GA- 60
G GG G GP GP P GP G +G PG G+ G +GP G G A SGP G GA
Sbjct: 163 GVAVGGLAG-YPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAI 221
Query: 61 -PRGPHG-GAASGLNGCCRCGARG 82
P GP G SG G R G RG
Sbjct: 222 GPSGPAGKDGESGRPG--RPGERG 243
Score = 48.9 bits (115), Expect = 2e-06
Identities = 34/98 (34%), Positives = 39/98 (39%), Gaps = 21/98 (21%)
Query: 7 GTGGSTGDADGPGGPGI-----------PDGPGGNAGGPGEAGATGGRGPRGAGAARASG 55
G G G+ GPGGPG P GP G G G+ G TG GP+G +G
Sbjct: 588 GAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTG 647
Query: 56 --------PGGGAPRGPHG--GAASGLNGCCRCGARGP 83
PG P+G G GA G G RGP
Sbjct: 648 GPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGP 685
Score = 47.8 bits (112), Expect = 5e-06
Identities = 27/60 (45%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G GS G++ PG PG P GP G G G G G G G R GPGG P+GP G
Sbjct: 552 GPPGSQGESGRPGPPG-PSGPRGQPGVMGFPGPKGNDGAPGKNGER-GGPGGPGPQGPPG 609
Score = 47.4 bits (111), Expect = 7e-06
Identities = 31/76 (40%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 7 GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGAGA--ARASGPGG---- 58
G G+ G+ PG GP P+G G G GE GA G GPRGA R PGG
Sbjct: 477 GLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMR 536
Query: 59 GAPRGPHGGAASGLNG 74
G P P G + G G
Sbjct: 537 GMPGSPGGPGSDGKPG 552
Score = 47.4 bits (111), Expect = 7e-06
Identities = 32/77 (41%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
+G GS G A GP GP P GP G G G G G GPRG R S G P P
Sbjct: 1127 QGAIGSPGPA-GPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPG 1185
Query: 66 GGAASGLNGCCRCGARG 82
G G C CG G
Sbjct: 1186 PPGPPGAPGPC-CGGVG 1201
Score = 47.0 bits (110), Expect = 9e-06
Identities = 42/103 (40%), Positives = 46/103 (44%), Gaps = 27/103 (26%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGN------------------AGGPGEAGATGGRGPRG 47
+G G G+ GP GP P GPGG+ G PGE G G GP+G
Sbjct: 605 QGPPGKNGET-GPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKG 663
Query: 48 -AGAARASGPGG--GAP--RGPHG-GAASGLNGCCRCGARGPE 84
AGA A G G GAP RGP G A GL G G GPE
Sbjct: 664 DAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRG--GAGPPGPE 704
Score = 46.6 bits (109), Expect = 1e-05
Identities = 33/74 (44%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 5 GRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGP 64
G G G G DGP GP P GP G AG PG+ G G G G R S PG GP
Sbjct: 748 GPGADGVPGK-DGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGS-PGERGETGP 805
Query: 65 HGGA----ASGLNG 74
G A A G NG
Sbjct: 806 PGPAGFPGAPGQNG 819
Score = 46.6 bits (109), Expect = 1e-05
Identities = 32/80 (40%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNA--GGPGEAGATGGRG----PRGAGAARASGPGG- 58
RG G G A PG PG PGG G PGE G G G P G+G A GP G
Sbjct: 800 RGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGV 859
Query: 59 ----GAPRGPHGGAASGLNG 74
G+P GP G G
Sbjct: 860 KGERGSPGGPGAAGFPGARG 879
Score = 46.6 bits (109), Expect = 1e-05
Identities = 29/67 (43%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARA--SGPGGGAPRG 63
+G GG G A PGG G P GP G G GE G+ GG G G AR PG G
Sbjct: 833 KGEGGPPGVAGPPGGSG-PAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPG 891
Query: 64 PHGGAAS 70
P G + S
Sbjct: 892 PPGPSGS 898
Score = 46.6 bits (109), Expect = 1e-05
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G G + PG G P GP GN G PG G +G +G G + S G P P
Sbjct: 888 GNPGPPGPSGSPGKDG-PPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGP 946
Query: 67 GAASGLNGCCRCGARGP 83
+G+ G G GP
Sbjct: 947 LGIAGITGA--RGLAGP 961
Score = 46.2 bits (108), Expect = 2e-05
Identities = 33/77 (42%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G G A G PG P GP G AG PG G GG G RG + GPG GP G
Sbjct: 498 GIPGEKGPAGERGAPG-PAGPRGAAGEPGRDGVPGGPGMRGMPGS-PGGPGSDGKPGPPG 555
Query: 67 GAASGLNGCCRCGARGP 83
+ G +G R G GP
Sbjct: 556 --SQGESG--RPGPPGP 568
Score = 46.2 bits (108), Expect = 2e-05
Identities = 33/77 (42%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGGAPRGPH 65
G G G+ G G PG P G G GGPG G G GPRG G GP G P
Sbjct: 723 GLQGMPGERGGLGSPG-PKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGP-AGQPGDKG 780
Query: 66 GGAASGLNGCCRCGARG 82
G A GL G G RG
Sbjct: 781 EGGAPGLPGI--AGPRG 795
Score = 46.2 bits (108), Expect = 2e-05
Identities = 30/82 (36%), Positives = 35/82 (42%), Gaps = 16/82 (19%)
Query: 5 GRGTGGSTGDADGPGGPGIPDGPG--------GNAGGPGEAGATGGRGPRGAGAARASGP 56
G+G G G PG PG P PG G+ G G AG G GP G+ A P
Sbjct: 1030 GKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGA----P 1085
Query: 57 GGGAPRGPHG----GAASGLNG 74
G PRG G A+G+ G
Sbjct: 1086 GPQGPRGDKGETGERGAAGIKG 1107
Score = 45.8 bits (107), Expect = 2e-05
Identities = 36/87 (41%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 6 RGTGGSTGDADGPGGPGI------PDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPG 57
RG G G PGGPG+ P GPG G G PG G +G GP G R PG
Sbjct: 518 RGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQ-PG 576
Query: 58 GGAPRGPHGG-AASGLNGCCRCGARGP 83
GP G A G NG R G GP
Sbjct: 577 VMGFPGPKGNDGAPGKNG-ERGGPGGP 602
Score = 45.8 bits (107), Expect = 2e-05
Identities = 33/86 (38%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 7 GTGGSTGDA--DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG----- 58
G G +GD GP GP GP G+ G PG G G +G G GAA G G
Sbjct: 1056 GPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNP 1115
Query: 59 GAPRGPHGGAASGLNGC-CRCGARGP 83
GAP P G G G RGP
Sbjct: 1116 GAPGSPGPAGQQGAIGSPGPAGPRGP 1141
Score = 45.8 bits (107), Expect = 2e-05
Identities = 30/68 (44%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRG-AGAARASG-PGG 58
RG G G PG PG P PG G G PG AG G GP G G SG PG
Sbjct: 1100 RGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGP 1159
Query: 59 GAPRGPHG 66
P GP G
Sbjct: 1160 IGPPGPRG 1167
Score = 45.4 bits (106), Expect = 3e-05
Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 3 AEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPR 62
A RG G+ G PG P GP G AG PG GA G GP G+ + + PG
Sbjct: 317 AGARGNDGARGSDGQPG----PPGPPGTAGFPGSPGAKGEVGPAGSPGSNGA-PGQRGEP 371
Query: 63 GPHGGAAS-------GLNG 74
GP G A + G+NG
Sbjct: 372 GPQGHAGAQGPPGPPGING 390
Score = 45.4 bits (106), Expect = 3e-05
Identities = 34/94 (36%), Positives = 42/94 (44%), Gaps = 18/94 (19%)
Query: 5 GRGTGGSTGDADGPG-----------GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARA 53
G+G G+ G+ PG GP P+G G AG PG GA G G +G R
Sbjct: 673 GKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGER- 731
Query: 54 SGPGGGAPRG----PHGGAASGLNGCCRCGARGP 83
G G P+G P G A G+ G + G RGP
Sbjct: 732 GGLGSPGPKGDKGEPGGPGADGVPG--KDGPRGP 763
Score = 44.7 bits (104), Expect = 4e-05
Identities = 32/78 (41%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G G A PG G P G G PG G G +GP G S PGG GP G
Sbjct: 348 GAKGEVGPAGSPGSNGAP----GQRGEPGPQGHAGAQGPPGPPGINGS-PGGKGEMGPAG 402
Query: 67 -GAASGLNGCCRCGARGP 83
A GL GARGP
Sbjct: 403 IPGAPGL-----MGARGP 415
Score = 44.3 bits (103), Expect = 6e-05
Identities = 31/72 (43%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGG------PGEAGATGGRGPRG----AGAARASG 55
RG G G G G G P GP G AG PGE G G GP+G G A G
Sbjct: 695 RGGAGPPGPEGGKGAAG-PPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADG 753
Query: 56 -PGGGAPRGPHG 66
PG PRGP G
Sbjct: 754 VPGKDGPRGPTG 765
Score = 44.3 bits (103), Expect = 6e-05
Identities = 35/91 (38%), Positives = 42/91 (46%), Gaps = 16/91 (17%)
Query: 7 GTGGSTGDADGPGGPGIP-----------DGPGGNAGGPGEAGATGGRGPRGA-GAARAS 54
G G +G+ PG G+P DG G+ G PG G+ GG+G RG G+ A
Sbjct: 984 GANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAP 1043
Query: 55 G-PGGGAPRGPHGGAA-SGLNGCCRCGARGP 83
G PG P GP G A SG G G GP
Sbjct: 1044 GAPGHPGPPGPVGPAGKSGDRG--ESGPAGP 1072
Score = 43.5 bits (101), Expect = 1e-04
Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 5 GRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGP 64
G+G G GD PG PGIP G G+ G PG+ G+ G GP G + +GP +P+
Sbjct: 101 GQGPQGPKGD---PGPPGIP-GRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYD 156
Query: 65 HGGAASGLNGCCRCGARGP 83
SG+ G GP
Sbjct: 157 SYDVKSGVAVGGLAGYPGP 175
Score = 43.5 bits (101), Expect = 1e-04
Identities = 42/103 (40%), Positives = 46/103 (44%), Gaps = 26/103 (25%)
Query: 6 RGTGGSTGDA--DGPGGP-GIPDGPGGN-----AGGPGEAGATGGRGPRG-AGAARASGP 56
RG G G A GP GP GI PGG AG PG G G RGP G AGA A G
Sbjct: 368 RGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGL 427
Query: 57 GGGA-------------PRGPHGGAASGLNGCCRCGARGPESR 86
GGA PRG G A G+ G GA+G + +
Sbjct: 428 RGGAGEPGKNGAKGEPGPRGERGEA--GIPGV--PGAKGEDGK 466
Score = 43.5 bits (101), Expect = 1e-04
Identities = 37/102 (36%), Positives = 42/102 (41%), Gaps = 27/102 (26%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPG---EAGATGGRGPRG----------AGAARA 53
G G +G PG G P GP GN G PG E G GG GP+G G
Sbjct: 564 GPPGPSGPRGQPGVMGFP-GPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGP 622
Query: 54 SGPGGG----APRGPHG-------GAASGLNGCCRCGARGPE 84
+GPGG P GP G G G NG + G GP+
Sbjct: 623 TGPGGDKGDTGPPGPQGLQGLPGTGGPPGENG--KPGEPGPK 662
Score = 43.5 bits (101), Expect = 1e-04
Identities = 36/95 (37%), Positives = 39/95 (41%), Gaps = 21/95 (22%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAG------GPGEAGATGGRGPRG-AGAARASG---- 55
G G G+ PG PG+ GP G+AG PG G G GP G AG A G
Sbjct: 903 GPPGPAGNTGAPGSPGV-SGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGP 961
Query: 56 PGGGAPRGPHG-------GAASGLNGCCRCGARGP 83
PG PRG G G NG G RGP
Sbjct: 962 PGMPGPRGSPGPQGVKGESGKPGANGL--SGERGP 994
Score = 43.1 bits (100), Expect = 1e-04
Identities = 30/67 (44%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPGG--GA--P 61
G G+ G+ G PG P G G G GE GA G RGP G G GP G GA P
Sbjct: 456 GVPGAKGEDGKDGSPGEP-GANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGP 514
Query: 62 RGPHGGA 68
GP G A
Sbjct: 515 AGPRGAA 521
Score = 43.1 bits (100), Expect = 1e-04
Identities = 38/88 (43%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
Query: 7 GTGGSTGDADGPGGPGIP--DG-PGGNA-----GGPGEAGATGGRGPRG-AGAARASGP- 56
GT G G PG G+P DG PGG G PG GA G GP G G A SG
Sbjct: 1005 GTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDR 1064
Query: 57 GGGAPRGPHGGAASGLNGCCRCGARGPE 84
G P GP G A G G GA GP+
Sbjct: 1065 GESGPAGPAG--APGPAG--SRGAPGPQ 1088
Score = 42.7 bits (99), Expect = 2e-04
Identities = 29/73 (39%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 7 GTGGSTGDADGPGGPGIPD-----GPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAP 61
G G G+ G G G P GP G AG PG +G G GP+G R S G GA
Sbjct: 813 GAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAA 872
Query: 62 RGPHGGAASGLNG 74
P A GL G
Sbjct: 873 GFP---GARGLPG 882
Score = 42.4 bits (98), Expect = 2e-04
Identities = 27/67 (40%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASG--PGGGAPRG 63
RG G G+ G PG+ G G PGE GA G GPRGA R PG RG
Sbjct: 266 RGFDGRNGEKGETGAPGLK----GENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARG 321
Query: 64 PHGGAAS 70
G S
Sbjct: 322 NDGARGS 328
Score = 42.4 bits (98), Expect = 2e-04
Identities = 26/62 (41%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGP 64
G G G+A PG PG DG G+ G PG G G G RGA PG P GP
Sbjct: 444 GPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGA-------PGFRGPAGP 496
Query: 65 HG 66
+G
Sbjct: 497 NG 498
Score = 42.4 bits (98), Expect = 2e-04
Identities = 32/81 (39%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAAR--ASGPGGGAPRG 63
RG G G PG PG P G G G PG AG TG G G + A PG G
Sbjct: 878 RGLPGPPGSNGNPGPPG-PSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPG 936
Query: 64 PHG--GAASGLNGCCRCGARG 82
G GA L GARG
Sbjct: 937 AQGPPGAPGPLGIAGITGARG 957
Score = 41.2 bits (95), Expect = 5e-04
Identities = 33/77 (42%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGG------PGEAGATGGRGPRG-AGAARASG-PGG 58
G GS G PG G P GP G+AG PG G+ GG+G G AG A G G
Sbjct: 354 GPAGSPGSNGAPGQRGEP-GPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGA 412
Query: 59 GAPRGPHG-GAASGLNG 74
P GP G A GL G
Sbjct: 413 RGPPGPAGANGAPGLRG 429
Score = 40.8 bits (94), Expect = 6e-04
Identities = 32/79 (40%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGG--GAPRGP 64
G G G + PG PG P G G G PG+AG +G GP GA SGP G G P
Sbjct: 180 GPPGPPGTSGHPGSPGSP-GYQGPPGEPGQAGPSGPPGP--PGAIGPSGPAGKDGESGRP 236
Query: 65 HGGAASGLNGCCRCGARGP 83
GL G G +GP
Sbjct: 237 GRPGERGLPG--PPGIKGP 253
Score = 40.4 bits (93), Expect = 8e-04
Identities = 26/65 (40%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
GT G G GP GP G G+ G PG G G GP GA G G A G G
Sbjct: 1152 GTSGHPGPI-GPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIAGIGG 1210
Query: 67 GAASG 71
A G
Sbjct: 1211 EKAGG 1215
Score = 39.3 bits (90), Expect = 0.002
Identities = 33/91 (36%), Positives = 39/91 (42%), Gaps = 12/91 (13%)
Query: 6 RGTGGSTGD--ADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGA--------ARASG 55
+G G G+ A GP GP G G G PG AGA G G RG+ A
Sbjct: 284 KGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGF 343
Query: 56 PGGGAPRGPHGGAAS-GLNGC-CRCGARGPE 84
PG +G G A S G NG + G GP+
Sbjct: 344 PGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQ 374
Score = 39.3 bits (90), Expect = 0.002
Identities = 33/81 (40%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASG-PGGGAPRG 63
RG G G G PG P G G AG PG GA G G G+ G A+G PG RG
Sbjct: 428 RGGAGEPGKNGAKGEPG-PRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERG 486
Query: 64 PHG-GAASGLNGCCRCGARGP 83
G +G NG G +GP
Sbjct: 487 APGFRGPAGPNGI--PGEKGP 505
Score = 38.5 bits (88), Expect = 0.003
Identities = 20/46 (43%), Positives = 22/46 (47%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAA 51
RG+ GS G PG PG P PG GG G A G G + G A
Sbjct: 1172 RGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIAGIGGEKAGGFA 1217
Score = 38.1 bits (87), Expect = 0.004
Identities = 32/74 (43%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG-AGAARASGPGG--GAP 61
G G G G G P PG G+ GG GE G G G G GA GP G GAP
Sbjct: 366 GQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAP 425
Query: 62 RGPHGGAAS-GLNG 74
G GGA G NG
Sbjct: 426 -GLRGGAGEPGKNG 438
Score = 38.1 bits (87), Expect = 0.004
Identities = 26/76 (34%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 7 GTGGSTGDADGPGGPGI-----PDGPGGNAGGPG---EAGATGGRGPRGAGAARASGPGG 58
G G G A PG PG+ P GP G G PG AG G G +G R
Sbjct: 393 GGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEA 452
Query: 59 GAPRGPHGGAASGLNG 74
G P P G +G
Sbjct: 453 GIPGVPGAKGEDGKDG 468
Score = 38.1 bits (87), Expect = 0.004
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 7 GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRG-----AGAARASGPGGG 59
G G G+ PG G G P G G GG G AG G +G +G G A PG
Sbjct: 819 GEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGAR 878
Query: 60 APRGPHG 66
GP G
Sbjct: 879 GLPGPPG 885
Score = 37.7 bits (86), Expect = 0.005
Identities = 34/95 (35%), Positives = 37/95 (38%), Gaps = 19/95 (20%)
Query: 5 GRGTGGSTGDADGPGGPGIPDGPG-----------GNAGGPGEAGATGGRGPRG----AG 49
G+G G G PG G PG G AG PG+ GA G GPRG AG
Sbjct: 394 GKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAG 453
Query: 50 AARASGPGG--GAPRGPHGGAASGLNGCCRCGARG 82
G G G P A+GL G G RG
Sbjct: 454 IPGVPGAKGEDGKDGSPGEPGANGLPGA--AGERG 486
Score = 37.7 bits (86), Expect = 0.005
Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
RG G G G PG P G G +G PG G +G RGP G G P
Sbjct: 956 RGLAGPPGMPGPRGSPG-PQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDG 1014
Query: 66 GGAASGLNG 74
+ GL G
Sbjct: 1015 NPGSDGLPG 1023
Score = 37.0 bits (84), Expect = 0.009
Identities = 29/73 (39%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 2 QAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAP 61
QA G G G A GP GP DG G G PGE G G G +G A PG
Sbjct: 208 QAGPSGPPGPPG-AIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGP----AGIPGFPGM 262
Query: 62 RGPHGGAASGLNG 74
+G G G NG
Sbjct: 263 KGHRG--FDGRNG 273
Score = 36.6 bits (83), Expect = 0.012
Identities = 25/73 (34%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGG------RGPRG-AGAARASGPGG 58
+G G G PG G+P G G G PG G G +GP G GA +GP G
Sbjct: 461 KGEDGKDGSPGEPGANGLP-GAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRG 519
Query: 59 GAPRGPHGGAASG 71
A G G
Sbjct: 520 AAGEPGRDGVPGG 532
Score = 36.6 bits (83), Expect = 0.012
Identities = 21/51 (41%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGE-AGATGGRGPRGAGAARASG 55
RG G G PG PG P GP G G PG G G G G +A G
Sbjct: 1166 RGNRGERGSEGSPGHPGQP-GPPGPPGAPGPCCGGVGAAAIAGIGGEKAGG 1215
Score = 36.2 bits (82), Expect = 0.016
Identities = 29/72 (40%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 6 RGTGGSTGDADGPGGP-GIPDGPG--GNAGGPGEAGATGGRGPRGA-------GAARASG 55
+G G G A GP GP G PG G GGPG G G G G+ G+ SG
Sbjct: 503 KGPAGERG-APGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESG 561
Query: 56 -PGGGAPRGPHG 66
PG P GP G
Sbjct: 562 RPGPPGPSGPRG 573
Score = 35.0 bits (79), Expect = 0.035
Identities = 25/79 (31%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G G G PG P GP G G GE G+ G G G PG P G G
Sbjct: 1143 GPSGPPGKDGTSGHPG-PIGPPGPRGNRGERGSEGSPGHPGQ-------PGPPGPPGAPG 1194
Query: 67 GAASGLNGCCRCGARGPES 85
G+ G G ++
Sbjct: 1195 PCCGGVGAAAIAGIGGEKA 1213
Score = 33.9 bits (76), Expect = 0.077
Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G TG G PG+P GP G+ G G G +G G G R GP G P+G G
Sbjct: 948 GIAGITGARGLAGPPGMP-GPRGSPGPQGVKGESGKPGANGLSGER--GPPG--PQGLPG 1002
Query: 67 GAAS 70
A +
Sbjct: 1003 LAGT 1006
Score = 32.3 bits (72), Expect = 0.23
Identities = 34/97 (35%), Positives = 37/97 (38%), Gaps = 24/97 (24%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----------AGAARASGP 56
G G +G PG G+P GP G G G G G +G RG GA G
Sbjct: 228 GKDGESGRPGRPGERGLP-GPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGE 286
Query: 57 GG-----GA--PRGPHGGAAS----GLNGCCRCGARG 82
G GA P GP G GL G GARG
Sbjct: 287 NGLPGENGAPGPMGPRGAPGERGRPGLPGA--AGARG 321
Score = 27.7 bits (60), Expect = 5.6
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 18 PGGPGIPDGPGGNAGGPGEAGATGGRG----PRGAGAARASGPGG---GAPRGP 64
P P GP G G PG G G G P G+ + GP G P GP
Sbjct: 95 PTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGP 148
Score = 27.3 bits (59), Expect = 7.3
Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 21 PGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHGGAASGLNGCCRCGA 80
P P P G G G G GP G R P G P P + G G C
Sbjct: 89 PQPPTAPTRPPNGQGPQGPKGDPGPPGI-PGRNGDP--GIPGQPGSPGSPGPPGICESCP 145
Query: 81 RGPES 85
GP++
Sbjct: 146 TGPQN 150
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 52.0 bits (123), Expect = 3e-07
Identities = 32/76 (42%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPGG 58
RG+ G G+ GP GP GP G AG PG G G +GP+G G A+GP G
Sbjct: 708 RGSPGERGEV-GPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAG 766
Query: 59 GAPRGPHGGAASGLNG 74
P GP G A S +G
Sbjct: 767 --PNGPPGPAGSRGDG 780
Score = 50.8 bits (120), Expect = 6e-07
Identities = 36/79 (45%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASG-PGGGAPRGP 64
G G+TGD G G P GP G G PGE G G GP G AG A A+G PG RG
Sbjct: 685 GPAGATGDRGEAGAAG-PAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGA 743
Query: 65 HGGAASGLNGCCRCGARGP 83
G G NG G GP
Sbjct: 744 KG--PKGENGV--VGPTGP 758
Score = 50.1 bits (118), Expect = 1e-06
Identities = 36/92 (39%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGG----- 59
+G G G+ PG G PG G PG AGATG RG G AG A +GP G
Sbjct: 657 KGEPGLRGEIGNPGRDGARGAPGA-VGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERG 715
Query: 60 --APRGPHG-----GAASGLNGCCRCGARGPE 84
P GP+G GAA GA+GP+
Sbjct: 716 EVGPAGPNGFAGPAGAAGQPGAKGERGAKGPK 747
Score = 49.3 bits (116), Expect = 2e-06
Identities = 36/77 (46%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPGG--GA 60
G G +G+A G PG P GP G G PG G G RG RG AGA GP G G
Sbjct: 844 GEKGPSGEAGTAGPPGTP-GPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGP 902
Query: 61 P--RGPHGGAAS-GLNG 74
P RGP G S G+NG
Sbjct: 903 PGARGPPGAVGSPGVNG 919
Score = 48.1 bits (113), Expect = 4e-06
Identities = 32/80 (40%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G TG G GP P GP GN G PG GA G GP G G P G
Sbjct: 598 GAAGPTGPI-GSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGE 656
Query: 67 GAASGLNGCC----RCGARG 82
GL G R GARG
Sbjct: 657 KGEPGLRGEIGNPGRDGARG 676
Score = 46.6 bits (109), Expect = 1e-05
Identities = 29/63 (46%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
RG G G A PG PG+ PG G PG G G GP G+ ASGP G RGP+
Sbjct: 381 RGPNGEAGSAGPPGPPGLRGSPGSR-GLPGADGRAGVMGP--PGSRGASGPAG--VRGPN 435
Query: 66 GGA 68
G A
Sbjct: 436 GDA 438
Score = 46.6 bits (109), Expect = 1e-05
Identities = 36/84 (42%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 7 GTGGSTGD--ADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGG-GAPRG 63
G G TG A GP GP P GP G+ G G G TG P AG GP G P G
Sbjct: 751 GVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTG--FPGAAGRTGPPGPSGISGPPG 808
Query: 64 PHGGAA-SGLNGCCRCGARGPESR 86
P G A GL G G +GP R
Sbjct: 809 PPGPAGKEGLRG--PRGDQGPVGR 830
Score = 46.2 bits (108), Expect = 2e-05
Identities = 34/81 (41%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 3 AEGRGTGGSTGDADGPG-----GPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGA 50
A RG GG G PG GP P G G G PG AG G RGPRG G
Sbjct: 774 AGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGE 833
Query: 51 ARASGPGGGA-PRGPHGGAAS 70
A GP G A +GP G A +
Sbjct: 834 VGAVGPPGFAGEKGPSGEAGT 854
Score = 45.8 bits (107), Expect = 2e-05
Identities = 33/69 (47%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPGGGAPRGPH 65
G G+ G +DG GP P GP G+AG PG GA G +G GA G A +GP G PRG
Sbjct: 229 GPAGARG-SDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAG--PRGEV 285
Query: 66 GGAASGLNG 74
G GL+G
Sbjct: 286 G--LPGLSG 292
Score = 45.1 bits (105), Expect = 3e-05
Identities = 35/93 (37%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 6 RGTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRG-------AGAARASGP 56
RG G+ G G PG DG GN G PG G G +G RG GAA A GP
Sbjct: 906 RGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGP 965
Query: 57 GGG-APRGPHG-----GAASGLNGCCRCGARGP 83
G P G HG G + + G RGP
Sbjct: 966 HGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGP 998
Score = 44.7 bits (104), Expect = 4e-05
Identities = 35/87 (40%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 6 RGTGGSTGDADGPGGPG---IPDGPGGNAGGPGEAGATGGRGPRGA-GAARASG-PGGGA 60
+G G G A PG PG IP GP G AG G G G GP G+ G + G PG
Sbjct: 309 KGAAGLPGVAGAPGLPGPRGIP-GPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAG 367
Query: 61 PRGPHGGAAS----GLNGCCRCGARGP 83
P+GP G + G NG G+ GP
Sbjct: 368 PQGPPGPSGEEGKRGPNG--EAGSAGP 392
Score = 43.9 bits (102), Expect = 7e-05
Identities = 31/72 (43%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNA------GGPGEAGATGGRGPRG-AGAARASGPGGG 59
G G+ G GP GP P GP G A G PG G G RGP+G G A GP G
Sbjct: 1039 GDQGAPGSV-GPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPPGPPG- 1096
Query: 60 APRGPHGGAASG 71
P GP G + G
Sbjct: 1097 -PPGPPGVSGGG 1107
Score = 43.1 bits (100), Expect = 1e-04
Identities = 29/66 (43%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGA-GAARASGPGGGAPR 62
+G G+ G PG PG PG G G PGE G G GP GA G+ + GP G P
Sbjct: 189 KGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVG--PA 246
Query: 63 GPHGGA 68
GP G A
Sbjct: 247 GPIGSA 252
Score = 43.1 bits (100), Expect = 1e-04
Identities = 36/88 (40%), Positives = 37/88 (42%), Gaps = 13/88 (14%)
Query: 7 GTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA---- 60
G G+TG G GP G GN G PG AG G GP G R GP G A
Sbjct: 334 GAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKR--GPNGEAGSAG 391
Query: 61 PRGPHGGAAS----GLNGC-CRCGARGP 83
P GP G S GL G R G GP
Sbjct: 392 PPGPPGLRGSPGSRGLPGADGRAGVMGP 419
Score = 42.7 bits (99), Expect = 2e-04
Identities = 33/79 (41%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 6 RGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPGG---- 58
RG G+ G G PG P GP G G GE G +G GP GA G SGP G
Sbjct: 948 RGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGD 1007
Query: 59 -GAP--RGPHGGAASGLNG 74
G P +GP G GL G
Sbjct: 1008 KGEPGEKGPRG--LPGLKG 1024
Score = 42.4 bits (98), Expect = 2e-04
Identities = 37/89 (41%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPGG- 58
G G G A G PG PDG G G PG G GG+G +G G SGP G
Sbjct: 508 GDKGHAGLAGARGAPG-PDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGE 566
Query: 59 -GAP--RGPHGGAASGLNG-CCRCGARGP 83
G P RG HG GL G G RGP
Sbjct: 567 VGKPGERGLHG--EFGLPGPAGPRGERGP 593
Score = 41.2 bits (95), Expect = 5e-04
Identities = 30/81 (37%), Positives = 33/81 (40%), Gaps = 16/81 (19%)
Query: 2 QAEGRGTG------GSTGDADGPGGPGIP-----DGPGGNAGGPGEAGATGGRGPRG-AG 49
Q +G+G G G G PG G P GP G G PG+ G G RGP G G
Sbjct: 80 QYDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPG 139
Query: 50 AARASG----PGGGAPRGPHG 66
A G PG RG G
Sbjct: 140 KAGEDGHPGKPGRPGERGVVG 160
Score = 40.8 bits (94), Expect = 6e-04
Identities = 32/87 (36%), Positives = 35/87 (40%), Gaps = 20/87 (22%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGG------- 59
G G G+ PG PG DG G G PG G G G G AA+ G G G
Sbjct: 36 GDRGPRGERGPPGPPG-RDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMG 94
Query: 60 --APRGPHGGAASGLNGCCRCGARGPE 84
PRGP G A GA GP+
Sbjct: 95 LMGPRGPPGAA----------GAPGPQ 111
Score = 40.8 bits (94), Expect = 6e-04
Identities = 32/88 (36%), Positives = 35/88 (39%), Gaps = 16/88 (18%)
Query: 7 GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAP--- 61
G+ G +G+ PG GP P GP G G G G G GP G R S G P
Sbjct: 352 GSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGAD 411
Query: 62 -----RGPHGG-AASGLNGCCRCGARGP 83
GP G ASG G RGP
Sbjct: 412 GRAGVMGPPGSRGASG-----PAGVRGP 434
Score = 40.8 bits (94), Expect = 6e-04
Identities = 30/69 (43%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 7 GTGGSTGDADGPG---GPGIPDGPG--GNAGGPGEAGATGGRGPRGA-GAARASGPGGGA 60
GT G +G + PG GIP G G G G GE G G G RGA GA A GP G
Sbjct: 631 GTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGAT 690
Query: 61 PRGPHGGAA 69
GAA
Sbjct: 691 GDRGEAGAA 699
Score = 40.4 bits (93), Expect = 8e-04
Identities = 33/78 (42%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 3 AEGR-GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG----PRGAGAARASGPG 57
A+GR G G G G GP GP G+AG PGE G G RG P G A GP
Sbjct: 410 ADGRAGVMGPPGSR-GASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPV 468
Query: 58 G-----GAPRGPHGGAAS 70
G G P GP G A +
Sbjct: 469 GLPGIDGRP-GPIGPAGA 485
Score = 40.0 bits (92), Expect = 0.001
Identities = 34/96 (35%), Positives = 37/96 (38%), Gaps = 15/96 (15%)
Query: 3 AEGRGTGGSTGD--ADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASG---- 55
A RG G G+ A GP GP G G G PG G G GP G AG G
Sbjct: 516 AGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGL 575
Query: 56 ------PGGGAPRGPHG--GAASGLNGCCRCGARGP 83
PG PRG G G + G+RGP
Sbjct: 576 HGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGP 611
Score = 40.0 bits (92), Expect = 0.001
Identities = 30/79 (37%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
RG G G G PGI G G+ G PG G G RGP G SGP G R H
Sbjct: 1017 RGLPGLKGHNGLQGLPGIA-GHHGDQGAPGSVGPAGPRGPAG-----PSGPAGKDGRTGH 1070
Query: 66 GGAASGLNGCCRCGARGPE 84
G G RGP+
Sbjct: 1071 PGTVG------PAGIRGPQ 1083
Score = 39.3 bits (90), Expect = 0.002
Identities = 26/61 (42%), Positives = 26/61 (42%), Gaps = 11/61 (18%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPGGG----APRGPH 65
GP GP G GN G PG G TG G G AGA A GP G P GP
Sbjct: 478 GPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQ 537
Query: 66 G 66
G
Sbjct: 538 G 538
Score = 39.3 bits (90), Expect = 0.002
Identities = 31/82 (37%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 7 GTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAP--R 62
G G TG + GP G P GP G G G+ G G +GPRG + G P
Sbjct: 976 GNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIA 1035
Query: 63 GPHGG-AASGLNGCCRCGARGP 83
G HG A G G G RGP
Sbjct: 1036 GHHGDQGAPGSVG--PAGPRGP 1055
Score = 38.9 bits (89), Expect = 0.002
Identities = 35/92 (38%), Positives = 38/92 (41%), Gaps = 15/92 (16%)
Query: 7 GTGGSTGD--ADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASG----- 55
G G G+ A G GP P GP G G PG +G G G GA GA A+G
Sbjct: 259 GAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVA 318
Query: 56 --PGGGAPRGPHG--GAASGLNGCCRCGARGP 83
PG PRG G GAA G GP
Sbjct: 319 GAPGLPGPRGIPGPVGAAGATGARGLVGEPGP 350
Score = 38.5 bits (88), Expect = 0.003
Identities = 24/63 (38%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG--AGAARASGPGGGAPRG 63
RG G G PG PG+ G G PGE G G G RG R PG RG
Sbjct: 180 RGHNGLDGLKGQPGAPGVK----GEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARG 235
Query: 64 PHG 66
G
Sbjct: 236 SDG 238
Score = 38.5 bits (88), Expect = 0.003
Identities = 31/80 (38%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 7 GTGGSTGDADGPGGP-GIPD--GPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRG 63
G G+ G A GP GP G+P G G GG GE G G RG G + GA
Sbjct: 625 GVVGAVGTA-GPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGA 683
Query: 64 PHGGAASGLNGCCRCGARGP 83
P A+G G GA GP
Sbjct: 684 PGPAGATGDRG--EAGAAGP 701
Score = 38.1 bits (87), Expect = 0.004
Identities = 30/82 (36%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 7 GTGGSTGDADGPGGPGIPD-----GPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAP 61
G G G+ PG PG P GP G G PG G G +G RG GAP
Sbjct: 136 GPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAP 195
Query: 62 RGPHGGAASGLNGC-CRCGARG 82
A G NG + GARG
Sbjct: 196 GVKGEPGAPGENGTPGQTGARG 217
Score = 37.4 bits (85), Expect = 0.007
Identities = 32/80 (40%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPGGGAPRGP 64
RG GS G+ GP G P G G G PG G G RG P G GP G +
Sbjct: 450 RGLPGSPGNI-GPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNG 508
Query: 65 HGGAASGLNGCCRCGARGPE 84
G A GL G GA GP+
Sbjct: 509 DKGHA-GLAGA--RGAPGPD 525
Score = 36.2 bits (82), Expect = 0.016
Identities = 30/83 (36%), Positives = 31/83 (37%), Gaps = 12/83 (14%)
Query: 7 GTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGGA 60
G G G A PG G P G G G G GA G GP G G A + G GG
Sbjct: 724 GFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPP 783
Query: 61 PRGPHGGAASGLNGCCRCGARGP 83
GAA R G GP
Sbjct: 784 GMTGFPGAAG------RTGPPGP 800
Score = 35.8 bits (81), Expect = 0.020
Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPGGG 59
G GG+ G G+ GP G G G GA G GP+G G +GP G
Sbjct: 72 GLGGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGA 131
Query: 60 -APRGPHGGA 68
P GP G A
Sbjct: 132 RGPAGPPGKA 141
Score = 35.8 bits (81), Expect = 0.020
Identities = 24/71 (33%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 6 RGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRG 63
+G G G+ GP G P GP G AG G G G G RG + + G P
Sbjct: 114 QGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGL 173
Query: 64 PHGGAASGLNG 74
P G NG
Sbjct: 174 PGFKGIRGHNG 184
Score = 35.0 bits (79), Expect = 0.035
Identities = 29/71 (40%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 3 AEGR-GTGGSTGDADGPGGPGIPD-----GPGGNAGGPGEAGATGGRGPRG-AGAARASG 55
A GR G G +G + PG PG GP G+ G G G G GP G AG SG
Sbjct: 791 AAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSG 850
Query: 56 PGGGAPRGPHG 66
G A GP G
Sbjct: 851 EAGTA--GPPG 859
Score = 32.0 bits (71), Expect = 0.29
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 7 GTGGSTGDA--DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGGAPRG 63
G G G A +G GP GP G G G G G G +G +G A +GP G G
Sbjct: 805 GPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPG--TPG 862
Query: 64 PHG 66
P G
Sbjct: 863 PQG 865
Score = 29.3 bits (64), Expect = 1.9
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATG 41
RG G G A GP GP P GP G +GG + G G
Sbjct: 1080 RGPQGHQGPA-GPPGPPGPPGPPGVSGGGYDFGYDG 1114
>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
sapiens]
Length = 1899
Score = 52.0 bits (123), Expect = 3e-07
Identities = 36/79 (45%), Positives = 44/79 (55%), Gaps = 9/79 (11%)
Query: 7 GTGGSTGDADGPGG-PGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGG-GAPRGP 64
G+ G+ G+ GPGG PG P PG G PGE G G +G RG G +SGP G P GP
Sbjct: 1787 GSAGARGEP-GPGGRPGFPGTPGMQ-GPPGERGLPGEKGERGTG---SSGPRGLPGPPGP 1841
Query: 65 HGGAASGLNGCCRCGARGP 83
G + +G G G+RGP
Sbjct: 1842 QGESRTGPPG--STGSRGP 1858
Score = 48.1 bits (113), Expect = 4e-06
Identities = 36/90 (40%), Positives = 38/90 (42%), Gaps = 14/90 (15%)
Query: 3 AEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAG--ATGGRGPRG-------AGAARA 53
A RG G G PG PG+ GP G G PGE G TG GPRG G +R
Sbjct: 1789 AGARGEPGPGGRPGFPGTPGM-QGPPGERGLPGEKGERGTGSSGPRGLPGPPGPQGESRT 1847
Query: 54 SGPGGGAPRGPHGGAASGLNGCCRCGARGP 83
PG RGP G N G RGP
Sbjct: 1848 GPPGSTGSRGPPGPPGRPGNS----GIRGP 1873
Score = 45.4 bits (106), Expect = 3e-05
Identities = 34/75 (45%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPGG--GA 60
G G TG PG PG P GP G+ G G+ GA G RGP G G+ +GP G G
Sbjct: 1654 GLPGRTGTPGLPGPPG-PMGPPGDRGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKPGK 1712
Query: 61 PRGPHG-GAASGLNG 74
P G HG SGL G
Sbjct: 1713 P-GDHGRPGPSGLKG 1726
Score = 41.6 bits (96), Expect = 4e-04
Identities = 30/73 (41%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 12 TGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGP-GGGAPRGPHGGAA 69
T D+ GP GP P G G G GE G +G GP G G GP G P+GP+G +
Sbjct: 1578 TQDSVGPPGPPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSI 1637
Query: 70 SGLNGCCRCGARG 82
G G R G +G
Sbjct: 1638 PGEQG--RQGMKG 1648
Score = 35.8 bits (81), Expect = 0.020
Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G TG DG GP P GP G+ G PG G +G G G R G +G G
Sbjct: 1675 GDRGFTGK-DGAMGPRGPPGPPGSPGSPGVTGPSGKPGKPG-DHGRPGPSGLKGEKGDRG 1732
Query: 67 GAAS 70
AS
Sbjct: 1733 DIAS 1736
Score = 33.5 bits (75), Expect = 0.10
Identities = 33/92 (35%), Positives = 36/92 (39%), Gaps = 17/92 (18%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGG-----------PGEAGATGGRGPRGAGA--AR 52
RG G +G A GP GP GP G G PGE G G +G G R
Sbjct: 1600 RGERGISG-AIGPPGPRGDIGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLPGR 1658
Query: 53 ASGPGGGAPRGPHGGAAS-GLNGCCRCGARGP 83
PG P GP G G G + GA GP
Sbjct: 1659 TGTPGLPGPPGPMGPPGDRGFTG--KDGAMGP 1688
Score = 32.0 bits (71), Expect = 0.29
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRG 47
RG G G G PG P PG G +G PG+ G G GP G
Sbjct: 1677 RGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKPGKPGDHGRPGPSG 1723
Score = 32.0 bits (71), Expect = 0.29
Identities = 29/77 (37%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 6 RGTGGSTGDADGPGGPGIPDG------PG-----GNAGGPGEAGATGGRGPRGAGAARAS 54
RGTG S+G PG PG P G PG G G PG G +G RGP G S
Sbjct: 1825 RGTG-SSGPRGLPGPPG-PQGESRTGPPGSTGSRGPPGPPGRPGNSGIRGPPGPPGYCDS 1882
Query: 55 GPGGGAPRGPHGGAASG 71
P G SG
Sbjct: 1883 SQCASIPYNGQGYPGSG 1899
Score = 30.0 bits (66), Expect = 1.1
Identities = 19/38 (50%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 2 QAEGR-GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAG 38
Q E R G GSTG PG PG P G G G PG G
Sbjct: 1842 QGESRTGPPGSTGSRGPPGPPGRP-GNSGIRGPPGPPG 1878
>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
sapiens]
Length = 3063
Score = 52.0 bits (123), Expect = 3e-07
Identities = 36/79 (45%), Positives = 44/79 (55%), Gaps = 9/79 (11%)
Query: 7 GTGGSTGDADGPGG-PGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGG-GAPRGP 64
G+ G+ G+ GPGG PG P PG G PGE G G +G RG G +SGP G P GP
Sbjct: 2951 GSAGARGEP-GPGGRPGFPGTPGMQ-GPPGERGLPGEKGERGTG---SSGPRGLPGPPGP 3005
Query: 65 HGGAASGLNGCCRCGARGP 83
G + +G G G+RGP
Sbjct: 3006 QGESRTGPPG--STGSRGP 3022
Score = 48.1 bits (113), Expect = 4e-06
Identities = 36/90 (40%), Positives = 38/90 (42%), Gaps = 14/90 (15%)
Query: 3 AEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAG--ATGGRGPRG-------AGAARA 53
A RG G G PG PG+ GP G G PGE G TG GPRG G +R
Sbjct: 2953 AGARGEPGPGGRPGFPGTPGM-QGPPGERGLPGEKGERGTGSSGPRGLPGPPGPQGESRT 3011
Query: 54 SGPGGGAPRGPHGGAASGLNGCCRCGARGP 83
PG RGP G N G RGP
Sbjct: 3012 GPPGSTGSRGPPGPPGRPGNS----GIRGP 3037
Score = 45.4 bits (106), Expect = 3e-05
Identities = 34/75 (45%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPGG--GA 60
G G TG PG PG P GP G+ G G+ GA G RGP G G+ +GP G G
Sbjct: 2818 GLPGRTGTPGLPGPPG-PMGPPGDRGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKPGK 2876
Query: 61 PRGPHG-GAASGLNG 74
P G HG SGL G
Sbjct: 2877 P-GDHGRPGPSGLKG 2890
Score = 41.6 bits (96), Expect = 4e-04
Identities = 30/73 (41%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 12 TGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGP-GGGAPRGPHGGAA 69
T D+ GP GP P G G G GE G +G GP G G GP G P+GP+G +
Sbjct: 2742 TQDSVGPPGPPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSI 2801
Query: 70 SGLNGCCRCGARG 82
G G R G +G
Sbjct: 2802 PGEQG--RQGMKG 2812
Score = 35.8 bits (81), Expect = 0.020
Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G TG DG GP P GP G+ G PG G +G G G R G +G G
Sbjct: 2839 GDRGFTGK-DGAMGPRGPPGPPGSPGSPGVTGPSGKPGKPG-DHGRPGPSGLKGEKGDRG 2896
Query: 67 GAAS 70
AS
Sbjct: 2897 DIAS 2900
Score = 33.5 bits (75), Expect = 0.10
Identities = 33/92 (35%), Positives = 36/92 (39%), Gaps = 17/92 (18%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGG-----------PGEAGATGGRGPRGAGA--AR 52
RG G +G A GP GP GP G G PGE G G +G G R
Sbjct: 2764 RGERGISG-AIGPPGPRGDIGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLPGR 2822
Query: 53 ASGPGGGAPRGPHGGAAS-GLNGCCRCGARGP 83
PG P GP G G G + GA GP
Sbjct: 2823 TGTPGLPGPPGPMGPPGDRGFTG--KDGAMGP 2852
Score = 32.0 bits (71), Expect = 0.29
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRG 47
RG G G G PG P PG G +G PG+ G G GP G
Sbjct: 2841 RGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKPGKPGDHGRPGPSG 2887
Score = 32.0 bits (71), Expect = 0.29
Identities = 29/77 (37%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 6 RGTGGSTGDADGPGGPGIPDG------PG-----GNAGGPGEAGATGGRGPRGAGAARAS 54
RGTG S+G PG PG P G PG G G PG G +G RGP G S
Sbjct: 2989 RGTG-SSGPRGLPGPPG-PQGESRTGPPGSTGSRGPPGPPGRPGNSGIRGPPGPPGYCDS 3046
Query: 55 GPGGGAPRGPHGGAASG 71
P G SG
Sbjct: 3047 SQCASIPYNGQGYPGSG 3063
Score = 30.0 bits (66), Expect = 1.1
Identities = 19/38 (50%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 2 QAEGR-GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAG 38
Q E R G GSTG PG PG P G G G PG G
Sbjct: 3006 QGESRTGPPGSTGSRGPPGPPGRP-GNSGIRGPPGPPG 3042
>gi|195972866 keratin 10 [Homo sapiens]
Length = 584
Score = 51.6 bits (122), Expect = 4e-07
Identities = 31/78 (39%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 5 GRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGP 64
GRG GGS G G G G GG+ GG G + G G G + G GGG+ G
Sbjct: 463 GRG-GGSFGGGYGGGSSGGGSSGGGHGGGHGGSSGGGYGGGSSGGGSSGGGYGGGSSSGG 521
Query: 65 HGGAASGLNGCCRCGARG 82
HGG++SG G G G
Sbjct: 522 HGGSSSGGYGGGSSGGGG 539
Score = 46.2 bits (108), Expect = 2e-05
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 3 AEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPR 62
+ G G GG G + G G G G G + GG G ++GG G +G GGG
Sbjct: 482 SSGGGHGGGHGGSSGGGYGGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGG-- 539
Query: 63 GPHGGAASG 71
G +GG +SG
Sbjct: 540 GGYGGGSSG 548
Score = 46.2 bits (108), Expect = 2e-05
Identities = 27/70 (38%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 5 GRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGP 64
G G GGS+G G G G GG GG +G GG G G + G GGG G
Sbjct: 488 GGGHGGSSGGGYGGGSSG-GGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGGYGGGS 546
Query: 65 HGGAASGLNG 74
GG +S G
Sbjct: 547 SGGGSSSGGG 556
Score = 45.8 bits (107), Expect = 2e-05
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 5 GRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGP 64
G +GG G GG G G G G G G G G G++ G GGG+ G
Sbjct: 506 GGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGGYGGGSSGGGSSSGGGYGGGSSSGG 565
Query: 65 HGGAASGLNGCCRCGARGP 83
H ++SG G ++GP
Sbjct: 566 HKSSSSGSVG--ESSSKGP 582
Score = 43.9 bits (102), Expect = 7e-05
Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 4 EGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRG 63
EG G+ G G G G G G G + GG G GG G G GGG+ G
Sbjct: 454 EGEGSSGGGGRGGGSFGGGY--GGGSSGGGSSGGGHGGGHGGSSGGGYGGGSSGGGSSGG 511
Query: 64 PH-GGAASGLNGCCRCGARG 82
+ GG++SG +G G G
Sbjct: 512 GYGGGSSSGGHGGSSSGGYG 531
Score = 35.8 bits (81), Expect = 0.020
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 11/78 (14%)
Query: 5 GRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGG---RGPRGAGAARAS------- 54
G G GG G G I G GG G +GG RG G G S
Sbjct: 18 GGGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGGGCFGGSSGGYGGL 77
Query: 55 -GPGGGAPRGPHGGAASG 71
G GGG+ RG +G ++ G
Sbjct: 78 GGFGGGSFRGSYGSSSFG 95
Score = 33.9 bits (76), Expect = 0.077
Identities = 27/74 (36%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 9 GGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA 60
GGS+G G GG G GG+ GG G+ GG G G G+ G GGG
Sbjct: 68 GGSSGGYGGLGGFGGGSFRGSYGSSSFGGSYGGSFGGGSFGG-GSFGGGSFGGGGFGGGG 126
Query: 61 PRGPHGGAASGLNG 74
G GG G G
Sbjct: 127 FGGGFGGGFGGDGG 140
Score = 30.8 bits (68), Expect = 0.66
Identities = 20/65 (30%), Positives = 24/65 (36%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G+ G G G GG G ++ G G+ GG G S GGG G G
Sbjct: 69 GSSGGYGGLGGFGGGSFRGSYGSSSFGGSYGGSFGGGSFGGGSFGGGSFGGGGFGGGGFG 128
Query: 67 GAASG 71
G G
Sbjct: 129 GGFGG 133
Score = 30.4 bits (67), Expect = 0.86
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 5 GRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGP--GGGAPR 62
G +GG +G + G G GG++GG G G GG RG+ + + G GG
Sbjct: 46 GFSSGGFSGGSFSRGSSG-GGCFGGSSGGYGGLGGFGGGSFRGSYGSSSFGGSYGGSFGG 104
Query: 63 GPHGGAASG 71
G GG + G
Sbjct: 105 GSFGGGSFG 113
Score = 29.6 bits (65), Expect = 1.5
Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHGGAASG 71
G GG G G G GG + +G G G + GG RG GG G
Sbjct: 17 GGGGGG---GGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGGGCFG 68
Score = 28.5 bits (62), Expect = 3.3
Identities = 25/63 (39%), Positives = 28/63 (44%), Gaps = 13/63 (20%)
Query: 9 GGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHGGA 68
GGS G + G G G GG+ GG G+ GG G G G G G G G GG
Sbjct: 95 GGSYGGSFGGGSFG-----GGSFGG----GSFGGGGFGGGG----FGGGFGGGFGGDGGL 141
Query: 69 ASG 71
SG
Sbjct: 142 LSG 144
Score = 27.3 bits (59), Expect = 7.3
Identities = 20/65 (30%), Positives = 24/65 (36%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G S+G G G G G G G GG G + S GG+ G G
Sbjct: 44 GGGFSSGGFSGGSFSRGSSGGGCFGGSSGGYGGLGGFGGGSFRGSYGSSSFGGSYGGSFG 103
Query: 67 GAASG 71
G + G
Sbjct: 104 GGSFG 108
Score = 27.3 bits (59), Expect = 7.3
Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 3 AEGRGTGGSTGDADGPGGP-GIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA- 60
+ G +GGS GG G G G GG G G G G + GGG+
Sbjct: 48 SSGGFSGGSFSRGSSGGGCFGGSSGGYGGLGGFGGGSFRGSYGSSSFGGSYGGSFGGGSF 107
Query: 61 PRGPHGGAASGLNG 74
G GG + G G
Sbjct: 108 GGGSFGGGSFGGGG 121
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 50.8 bits (120), Expect = 6e-07
Identities = 36/87 (41%), Positives = 39/87 (44%), Gaps = 15/87 (17%)
Query: 6 RGTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA 60
RG G G GGPG+ P GP G AG PGE GA G GP G PG
Sbjct: 898 RGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGP-------PGRPG 950
Query: 61 PRGPHGGAA-SGLNGCCRCGARGPESR 86
P+GP G A G+ G G GP R
Sbjct: 951 PQGPPGAAGEKGVPG--EKGPIGPTGR 975
Score = 48.9 bits (115), Expect = 2e-06
Identities = 37/84 (44%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATG-GRGPRGAGAARASGPGG--GAP 61
GT G G PG PG P DGP G G PGE G G GP G SGP G G+P
Sbjct: 872 GTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSP 931
Query: 62 RGPHGGAASG--LNGCCRCGARGP 83
G G A SG + R G +GP
Sbjct: 932 -GERGAAGSGGPIGPPGRPGPQGP 954
Score = 48.9 bits (115), Expect = 2e-06
Identities = 34/90 (37%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 6 RGTGGSTGDADGPGGPGIP--------DGPGGNAGG---PGEAGATGGRGPRGAGAARAS 54
RG G G++ PG PG P DGP GN G PG+ G G GPRG A+
Sbjct: 1147 RGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGD 1206
Query: 55 GPGGGAPRGPHGGAASGLNG-CCRCGARGP 83
G P P +G NG G RGP
Sbjct: 1207 RGEDGEPGQPGSPGPTGENGPPGPLGKRGP 1236
Score = 45.8 bits (107), Expect = 2e-05
Identities = 32/87 (36%), Positives = 35/87 (40%), Gaps = 19/87 (21%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPG--------------GNAGGPGEAGATGGRGPRGAGAA 51
RG G+ GD G PG P PG G AG PG G GG+G +G A
Sbjct: 1198 RGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGA 1257
Query: 52 RASGPGGGAPRGPHGGAA----SGLNG 74
PG P GP G A GL G
Sbjct: 1258 -IGAPGKTGPVGPAGPAGKPGPDGLRG 1283
Score = 43.5 bits (101), Expect = 1e-04
Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG-GAPRG 63
+GT G+ G+ GP GP P GP G G G G G RGP+G GA G G P G
Sbjct: 1009 KGTKGNKGE-HGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPG 1067
Query: 64 PHG 66
P G
Sbjct: 1068 PIG 1070
Score = 43.5 bits (101), Expect = 1e-04
Identities = 33/72 (45%), Positives = 38/72 (52%), Gaps = 12/72 (16%)
Query: 6 RGTGGSTGDADGPGGP--GIPD-GPGGNAGGPGEAGATG------GRGPRG-AGAARASG 55
RG G G ADGP GP G+ + GP G G PGE+G+ G +GPRG G SG
Sbjct: 1099 RGPAGPNG-ADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESG 1157
Query: 56 -PGGGAPRGPHG 66
PG P GP G
Sbjct: 1158 QPGEPGPPGPKG 1169
Score = 42.7 bits (99), Expect = 2e-04
Identities = 31/80 (38%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
+G G G A PG G DG G G PG+ G G +G G PG P GP
Sbjct: 979 QGPVGLPGPAGPPGVAG-EDGDKGEVGDPGQKGTKGNKGEHGP-------PGPPGPIGPV 1030
Query: 66 G-GAASGLNGCCRCGARGPE 84
G A+G +G GARGP+
Sbjct: 1031 GQPGAAGADG--EPGARGPQ 1048
Score = 42.4 bits (98), Expect = 2e-04
Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 11/61 (18%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
+G+ G G+ PG G P GPGG G PG AG G +G A+GPGG P+G
Sbjct: 1351 QGSPGQKGEMGIPGASG-PIGPGGPPGLPGPAGPKGAKG--------ATGPGG--PKGEK 1399
Query: 66 G 66
G
Sbjct: 1400 G 1400
Score = 42.0 bits (97), Expect = 3e-04
Identities = 27/68 (39%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 6 RGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARA----SGPGG- 58
RG G +G GP GP GP G G G G +GG GP G R GP G
Sbjct: 742 RGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGF 801
Query: 59 GAPRGPHG 66
P+GP G
Sbjct: 802 PGPKGPPG 809
Score = 41.2 bits (95), Expect = 5e-04
Identities = 28/73 (38%), Positives = 31/73 (42%), Gaps = 13/73 (17%)
Query: 7 GTGGSTGDAD-----------GPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARAS 54
G G TGD GP GP DGP G GG G G G +G P +G+
Sbjct: 1079 GEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQ 1138
Query: 55 G-PGGGAPRGPHG 66
G PG PRG G
Sbjct: 1139 GEPGVKGPRGERG 1151
Score = 40.8 bits (94), Expect = 6e-04
Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 6 RGTGGSTGDADGPG-----GPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG- 58
RG G+ G+ PG GP G G+ G PG G+ G +G G GA+ GPGG
Sbjct: 1315 RGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGP 1374
Query: 59 ---GAPRGPHGGAASGLNG 74
P GP G A G G
Sbjct: 1375 PGLPGPAGPKG--AKGATG 1391
Score = 40.4 bits (93), Expect = 8e-04
Identities = 28/71 (39%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGAGAARASGP-GGGAPRG 63
G G G PG PG+P DGP G+ G G G G +GP G GP G PRG
Sbjct: 581 GPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSG-----PQGPLGYPGPRG 635
Query: 64 PHGGAASGLNG 74
G G+ G
Sbjct: 636 VKG--VDGIRG 644
Score = 40.0 bits (92), Expect = 0.001
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----------GNAGGPGEAGATGGRGPRGAGAARAS- 54
G G G+ G PGI PG G +G PGE G G +GP G + +
Sbjct: 1121 GPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNP 1180
Query: 55 GPGG--GAPRGPHGGAASGLNG 74
GP G G P P G G +G
Sbjct: 1181 GPVGFPGDPGPPGEGGPRGQDG 1202
Score = 39.3 bits (90), Expect = 0.002
Identities = 23/50 (46%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
GP GP GP G G PG G G RGP G RA PG GP G
Sbjct: 316 GPEGPAGLIGPPGIQGNPGPVGDPGERGPPG----RAGLPGSDGAPGPPG 361
Score = 39.3 bits (90), Expect = 0.002
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARA-SGPGGG-APRG 63
+G G+ G +GP GP G G +G GE G G GP G R +GP G P+G
Sbjct: 1054 KGDEGTRG-FNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQG 1112
Query: 64 PHGGAAS 70
P GG +
Sbjct: 1113 PPGGVGN 1119
Score = 39.3 bits (90), Expect = 0.002
Identities = 36/88 (40%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 3 AEGRGTG-GSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-------GAARAS 54
+EGR G G+ GD G PG GP G AG G+ G G RG G+ GA +
Sbjct: 1242 SEGRQGGKGAKGDPGAIGAPG-KTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQA 1300
Query: 55 GPGGGAPRGPHGGAASGLNGCCRCGARG 82
GP G P GP G GL G GA+G
Sbjct: 1301 GPPG--PVGPPG--LPGLRG--DAGAKG 1322
Score = 38.9 bits (89), Expect = 0.002
Identities = 31/80 (38%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG--GAPRG 63
G GS G+ DGP GP GP G+ G PG G G G G G GP G G P
Sbjct: 674 GVPGSRGE-DGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGF 732
Query: 64 PHGGAASGLNGCC-RCGARG 82
P G G + G RG
Sbjct: 733 PGASGEKGARGLSGKSGPRG 752
Score = 38.9 bits (89), Expect = 0.002
Identities = 28/66 (42%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 6 RGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGG-GAPR 62
RG GS G PG PG P G G G PGE G G G G GP G P
Sbjct: 934 RGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDG-----VQGPVGLPGPA 988
Query: 63 GPHGGA 68
GP G A
Sbjct: 989 GPPGVA 994
Score = 38.5 bits (88), Expect = 0.003
Identities = 30/76 (39%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 7 GTGGSTGDA--DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGP 64
G G +GD GP GP GP G AG G AGA G RG G + G P P
Sbjct: 422 GLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLP 481
Query: 65 ----HGG--AASGLNG 74
H G A GL G
Sbjct: 482 GEKGHRGDTGAQGLPG 497
Score = 38.5 bits (88), Expect = 0.003
Identities = 36/105 (34%), Positives = 38/105 (36%), Gaps = 24/105 (22%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPG--------------GNAGGPGEAGATGGRGPRGAGAA 51
+G G TG G PG P PG G+ G PG G G G RG
Sbjct: 844 QGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGE 903
Query: 52 R-----ASGP---GGGAPRGPHGGAAS-GLNGCCRCGAR-GPESR 86
R A GP G P GP G A S G G G GP R
Sbjct: 904 RGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGR 948
Score = 37.4 bits (85), Expect = 0.007
Identities = 27/69 (39%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPGG--- 58
+G G TG PG PG DG G+ G G G G GPRG G GP G
Sbjct: 484 KGHRGDTGAQGLPGPPG-EDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRG 542
Query: 59 -GAPRGPHG 66
P+GP G
Sbjct: 543 MDGPQGPKG 551
Score = 37.4 bits (85), Expect = 0.007
Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 8/77 (10%)
Query: 6 RGTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPG 57
RG G G PG PG+ GP G G PG G G +G G +
Sbjct: 823 RGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGD 882
Query: 58 GGAPRGPHGGAASGLNG 74
G P P +GL G
Sbjct: 883 PGPPGAPGKDGPAGLRG 899
Score = 37.0 bits (84), Expect = 0.009
Identities = 28/65 (43%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 17 GPGGP----GIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGGAPRGPHGGA--A 69
GP GP G P GP G G PG G +G GP+G G +GP G A R GA A
Sbjct: 401 GPPGPMGYTGRP-GPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGA 459
Query: 70 SGLNG 74
G+ G
Sbjct: 460 RGMPG 464
Score = 37.0 bits (84), Expect = 0.009
Identities = 25/73 (34%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 6 RGTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRG--AGAARASG 55
+GT G G PG G+P GP G G PG+ G G G RG +
Sbjct: 775 KGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGP 834
Query: 56 PGGGAPRGPHGGA 68
PG GP G A
Sbjct: 835 PGPPGVVGPQGAA 847
Score = 36.6 bits (83), Expect = 0.012
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G++G+ G G GP G G G G G RG G A+ + GG P GP G
Sbjct: 731 GFPGASGEKGARGLSG-KSGPRGERGPTGPRGQRGPRGATGKSGAKGTS-GGDGPHGPPG 788
Score = 36.2 bits (82), Expect = 0.016
Identities = 29/80 (36%), Positives = 32/80 (40%), Gaps = 19/80 (23%)
Query: 6 RGTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPGG- 58
RG G G PG G P GP G G PG G G +GP+G+ G GP G
Sbjct: 505 RGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQ 564
Query: 59 -GAPR-----------GPHG 66
G P GPHG
Sbjct: 565 QGTPGTQGLPGPQGAIGPHG 584
Score = 35.8 bits (81), Expect = 0.020
Identities = 26/65 (40%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 16 DGPGGPGIPDGPGGNAGGPGEAGATGGR---GPRGA-GAARASGPGG--GAPRGPHGGAA 69
DGP GP GP G G PG+ G G + GP+GA G GP G G P P
Sbjct: 544 DGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGP 603
Query: 70 SGLNG 74
G G
Sbjct: 604 PGHPG 608
Score = 35.8 bits (81), Expect = 0.020
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGG----GAP 61
+G G +G + GP G P GP G G G G +G +G G GP G P
Sbjct: 739 KGARGLSGKS-GPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPH--GPPGERGLPGP 795
Query: 62 RGPHG 66
+GP+G
Sbjct: 796 QGPNG 800
Score = 35.8 bits (81), Expect = 0.020
Identities = 29/89 (32%), Positives = 33/89 (37%), Gaps = 25/89 (28%)
Query: 3 AEGRGTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRGAGAARAS 54
A G G G+ G + PG G P GP G G PG G G G +G
Sbjct: 910 AGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGV------ 963
Query: 55 GPGGGAPRGPHGGAASGLNGCCRCGARGP 83
PG P GP G R G +GP
Sbjct: 964 -PGEKGPIGPTG----------RDGVQGP 981
Score = 35.4 bits (80), Expect = 0.027
Identities = 34/90 (37%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 2 QAEGRGTGGSTGDADGPGGPGIP-----DG-PG--GNAGGPGEAGATGGRGPRGAGAARA 53
+A RG G+ G PG PG+ DG PG G G G+ GA G GP G R
Sbjct: 447 KAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERG 506
Query: 54 SGPGGGAPRGPHGGAASGLNGCCRCGARGP 83
G PRG G SG G G +GP
Sbjct: 507 D-DGEIGPRGLPG--ESGPRGL--LGPKGP 531
Score = 35.4 bits (80), Expect = 0.027
Identities = 27/84 (32%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRG 63
+G GS G PG PG PG G G G G G +GP+G G P
Sbjct: 547 QGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGH 606
Query: 64 PHGGAASGLNGCCRCGARGPESRL 87
P G G G GP+ L
Sbjct: 607 PGKEGPPGTKG--NQGPSGPQGPL 628
Score = 35.4 bits (80), Expect = 0.027
Identities = 32/89 (35%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 6 RGTGGSTGDAD--GPGGPGIPDGPGGNAGG------PGEAGATGGRGPRG-AGAARASGP 56
RG G TG GP G G G +GG PGE G G +GP G G GP
Sbjct: 751 RGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGP 810
Query: 57 GG--GAPRGPHGGAASGLNGCCRCGARGP 83
G G P P G G + G GP
Sbjct: 811 PGKDGLPGHPGQRGEVGFQG--KTGPPGP 837
Score = 35.4 bits (80), Expect = 0.027
Identities = 29/95 (30%), Positives = 33/95 (34%), Gaps = 18/95 (18%)
Query: 7 GTGGSTGDADGPGGPGIPD--------------GPGGNAGGPGEAGATGGRGPRGAGAAR 52
G G+ G PG PG P G G G PG G TG GP G R
Sbjct: 1175 GPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKR 1234
Query: 53 --ASGPGGGAPRGPHG--GAASGLNGCCRCGARGP 83
A PG +G G G + + G GP
Sbjct: 1235 GPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGP 1269
Score = 34.7 bits (78), Expect = 0.045
Identities = 25/66 (37%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 6 RGTGGSTGDADGPG-----GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA 60
RG GS G PG GP P GP G G G+AGA G +G G PG
Sbjct: 1282 RGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGL-IGLIGPPGEQG 1340
Query: 61 PRGPHG 66
+G G
Sbjct: 1341 EKGDRG 1346
Score = 34.3 bits (77), Expect = 0.059
Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGG-GAPRGPH 65
G G G G G+P GP G G G+ G G RG G SGP G P+GP
Sbjct: 479 GLPGEKGHRGDTGAQGLP-GPPGEDGERGDDGEIGPRGLPG-----ESGPRGLLGPKGPP 532
Query: 66 G-GAASGLNGCCRCGARGPESRL 87
G G+ G G +GP+ L
Sbjct: 533 GIPGPPGVRG--MDGPQGPKGSL 553
Score = 33.9 bits (76), Expect = 0.077
Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRGAGAARASGPGG--G 59
G G G PG G+P PG G G G G G GP+ GAA +GP G G
Sbjct: 800 GFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQ--GAAGETGPMGERG 857
Query: 60 APRGPHGGAASGLNG 74
P P GL G
Sbjct: 858 HPGPPGPPGEQGLPG 872
Score = 32.0 bits (71), Expect = 0.29
Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 6 RGTGGSTGDADGPGGPGIPD-----GPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG 58
RG G G+ G PG G G G PG G G GP+G G GP G
Sbjct: 643 RGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPG 701
Score = 31.2 bits (69), Expect = 0.50
Identities = 32/90 (35%), Positives = 34/90 (37%), Gaps = 17/90 (18%)
Query: 7 GTGGSTGDADGPGGPGI-----------PDGPGGNAGGPGEAGATGGRGPRG-AGAARAS 54
G G G A G PG +G G G PG G G GP G G
Sbjct: 1028 GPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDV 1087
Query: 55 GP-GGGAPRGPHGGAASGLNGCCRCGARGP 83
GP G P GP G A G NG G +GP
Sbjct: 1088 GPMGPPGPPGPRGPA--GPNGA--DGPQGP 1113
Score = 30.0 bits (66), Expect = 1.1
Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 7 GTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAP 61
G+ G G G PG P GP G G PG G G G RG + G P
Sbjct: 599 GSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFP 658
Score = 27.3 bits (59), Expect = 7.3
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
Query: 7 GTGGSTGDADGPGGP----GIPDGPGGNAGGPGE 36
G G+ G A GPGGP G+ GP G+ G PGE
Sbjct: 1382 GPKGAKG-ATGPGGPKGEKGV-QGPPGHPGPPGE 1413
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 50.8 bits (120), Expect = 6e-07
Identities = 36/87 (41%), Positives = 39/87 (44%), Gaps = 15/87 (17%)
Query: 6 RGTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA 60
RG G G GGPG+ P GP G AG PGE GA G GP G PG
Sbjct: 877 RGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGP-------PGRPG 929
Query: 61 PRGPHGGAA-SGLNGCCRCGARGPESR 86
P+GP G A G+ G G GP R
Sbjct: 930 PQGPPGAAGEKGVPG--EKGPIGPTGR 954
Score = 48.9 bits (115), Expect = 2e-06
Identities = 37/84 (44%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATG-GRGPRGAGAARASGPGG--GAP 61
GT G G PG PG P DGP G G PGE G G GP G SGP G G+P
Sbjct: 851 GTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSP 910
Query: 62 RGPHGGAASG--LNGCCRCGARGP 83
G G A SG + R G +GP
Sbjct: 911 -GERGAAGSGGPIGPPGRPGPQGP 933
Score = 48.9 bits (115), Expect = 2e-06
Identities = 34/90 (37%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 6 RGTGGSTGDADGPGGPGIP--------DGPGGNAGG---PGEAGATGGRGPRGAGAARAS 54
RG G G++ PG PG P DGP GN G PG+ G G GPRG A+
Sbjct: 1126 RGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGD 1185
Query: 55 GPGGGAPRGPHGGAASGLNG-CCRCGARGP 83
G P P +G NG G RGP
Sbjct: 1186 RGEDGEPGQPGSPGPTGENGPPGPLGKRGP 1215
Score = 45.8 bits (107), Expect = 2e-05
Identities = 32/87 (36%), Positives = 35/87 (40%), Gaps = 19/87 (21%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPG--------------GNAGGPGEAGATGGRGPRGAGAA 51
RG G+ GD G PG P PG G AG PG G GG+G +G A
Sbjct: 1177 RGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGA 1236
Query: 52 RASGPGGGAPRGPHGGAA----SGLNG 74
PG P GP G A GL G
Sbjct: 1237 -IGAPGKTGPVGPAGPAGKPGPDGLRG 1262
Score = 43.5 bits (101), Expect = 1e-04
Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG-GAPRG 63
+GT G+ G+ GP GP P GP G G G G G RGP+G GA G G P G
Sbjct: 988 KGTKGNKGE-HGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPG 1046
Query: 64 PHG 66
P G
Sbjct: 1047 PIG 1049
Score = 43.5 bits (101), Expect = 1e-04
Identities = 33/72 (45%), Positives = 38/72 (52%), Gaps = 12/72 (16%)
Query: 6 RGTGGSTGDADGPGGP--GIPD-GPGGNAGGPGEAGATG------GRGPRG-AGAARASG 55
RG G G ADGP GP G+ + GP G G PGE+G+ G +GPRG G SG
Sbjct: 1078 RGPAGPNG-ADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESG 1136
Query: 56 -PGGGAPRGPHG 66
PG P GP G
Sbjct: 1137 QPGEPGPPGPKG 1148
Score = 42.7 bits (99), Expect = 2e-04
Identities = 31/80 (38%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
+G G G A PG G DG G G PG+ G G +G G PG P GP
Sbjct: 958 QGPVGLPGPAGPPGVAG-EDGDKGEVGDPGQKGTKGNKGEHGP-------PGPPGPIGPV 1009
Query: 66 G-GAASGLNGCCRCGARGPE 84
G A+G +G GARGP+
Sbjct: 1010 GQPGAAGADG--EPGARGPQ 1027
Score = 42.4 bits (98), Expect = 2e-04
Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 11/61 (18%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
+G+ G G+ PG G P GPGG G PG AG G +G A+GPGG P+G
Sbjct: 1330 QGSPGQKGEMGIPGASG-PIGPGGPPGLPGPAGPKGAKG--------ATGPGG--PKGEK 1378
Query: 66 G 66
G
Sbjct: 1379 G 1379
Score = 42.0 bits (97), Expect = 3e-04
Identities = 27/68 (39%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 6 RGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARA----SGPGG- 58
RG G +G GP GP GP G G G G +GG GP G R GP G
Sbjct: 721 RGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGF 780
Query: 59 GAPRGPHG 66
P+GP G
Sbjct: 781 PGPKGPPG 788
Score = 41.2 bits (95), Expect = 5e-04
Identities = 28/73 (38%), Positives = 31/73 (42%), Gaps = 13/73 (17%)
Query: 7 GTGGSTGDAD-----------GPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARAS 54
G G TGD GP GP DGP G GG G G G +G P +G+
Sbjct: 1058 GEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQ 1117
Query: 55 G-PGGGAPRGPHG 66
G PG PRG G
Sbjct: 1118 GEPGVKGPRGERG 1130
Score = 40.8 bits (94), Expect = 6e-04
Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 6 RGTGGSTGDADGPG-----GPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG- 58
RG G+ G+ PG GP G G+ G PG G+ G +G G GA+ GPGG
Sbjct: 1294 RGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGP 1353
Query: 59 ---GAPRGPHGGAASGLNG 74
P GP G A G G
Sbjct: 1354 PGLPGPAGPKG--AKGATG 1370
Score = 40.4 bits (93), Expect = 8e-04
Identities = 28/71 (39%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGAGAARASGP-GGGAPRG 63
G G G PG PG+P DGP G+ G G G G +GP G GP G PRG
Sbjct: 560 GPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSG-----PQGPLGYPGPRG 614
Query: 64 PHGGAASGLNG 74
G G+ G
Sbjct: 615 VKG--VDGIRG 623
Score = 40.0 bits (92), Expect = 0.001
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----------GNAGGPGEAGATGGRGPRGAGAARAS- 54
G G G+ G PGI PG G +G PGE G G +GP G + +
Sbjct: 1100 GPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNP 1159
Query: 55 GPGG--GAPRGPHGGAASGLNG 74
GP G G P P G G +G
Sbjct: 1160 GPVGFPGDPGPPGEGGPRGQDG 1181
Score = 39.3 bits (90), Expect = 0.002
Identities = 23/50 (46%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
GP GP GP G G PG G G RGP G RA PG GP G
Sbjct: 295 GPEGPAGLIGPPGIQGNPGPVGDPGERGPPG----RAGLPGSDGAPGPPG 340
Score = 39.3 bits (90), Expect = 0.002
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARA-SGPGGG-APRG 63
+G G+ G +GP GP G G +G GE G G GP G R +GP G P+G
Sbjct: 1033 KGDEGTRG-FNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQG 1091
Query: 64 PHGGAAS 70
P GG +
Sbjct: 1092 PPGGVGN 1098
Score = 39.3 bits (90), Expect = 0.002
Identities = 36/88 (40%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 3 AEGRGTG-GSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-------GAARAS 54
+EGR G G+ GD G PG GP G AG G+ G G RG G+ GA +
Sbjct: 1221 SEGRQGGKGAKGDPGAIGAPG-KTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQA 1279
Query: 55 GPGGGAPRGPHGGAASGLNGCCRCGARG 82
GP G P GP G GL G GA+G
Sbjct: 1280 GPPG--PVGPPG--LPGLRG--DAGAKG 1301
Score = 38.9 bits (89), Expect = 0.002
Identities = 31/80 (38%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG--GAPRG 63
G GS G+ DGP GP GP G+ G PG G G G G G GP G G P
Sbjct: 653 GVPGSRGE-DGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGF 711
Query: 64 PHGGAASGLNGCC-RCGARG 82
P G G + G RG
Sbjct: 712 PGASGEKGARGLSGKSGPRG 731
Score = 38.9 bits (89), Expect = 0.002
Identities = 28/66 (42%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 6 RGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGG-GAPR 62
RG GS G PG PG P G G G PGE G G G G GP G P
Sbjct: 913 RGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDG-----VQGPVGLPGPA 967
Query: 63 GPHGGA 68
GP G A
Sbjct: 968 GPPGVA 973
Score = 38.5 bits (88), Expect = 0.003
Identities = 30/76 (39%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 7 GTGGSTGDA--DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGP 64
G G +GD GP GP GP G AG G AGA G RG G + G P P
Sbjct: 401 GLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLP 460
Query: 65 ----HGG--AASGLNG 74
H G A GL G
Sbjct: 461 GEKGHRGDTGAQGLPG 476
Score = 38.5 bits (88), Expect = 0.003
Identities = 36/105 (34%), Positives = 38/105 (36%), Gaps = 24/105 (22%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPG--------------GNAGGPGEAGATGGRGPRGAGAA 51
+G G TG G PG P PG G+ G PG G G G RG
Sbjct: 823 QGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGE 882
Query: 52 R-----ASGP---GGGAPRGPHGGAAS-GLNGCCRCGAR-GPESR 86
R A GP G P GP G A S G G G GP R
Sbjct: 883 RGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGR 927
Score = 37.4 bits (85), Expect = 0.007
Identities = 27/69 (39%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPGG--- 58
+G G TG PG PG DG G+ G G G G GPRG G GP G
Sbjct: 463 KGHRGDTGAQGLPGPPG-EDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRG 521
Query: 59 -GAPRGPHG 66
P+GP G
Sbjct: 522 MDGPQGPKG 530
Score = 37.4 bits (85), Expect = 0.007
Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 8/77 (10%)
Query: 6 RGTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPG 57
RG G G PG PG+ GP G G PG G G +G G +
Sbjct: 802 RGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGD 861
Query: 58 GGAPRGPHGGAASGLNG 74
G P P +GL G
Sbjct: 862 PGPPGAPGKDGPAGLRG 878
Score = 37.0 bits (84), Expect = 0.009
Identities = 28/65 (43%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 17 GPGGP----GIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGGAPRGPHGGA--A 69
GP GP G P GP G G PG G +G GP+G G +GP G A R GA A
Sbjct: 380 GPPGPMGYTGRP-GPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGA 438
Query: 70 SGLNG 74
G+ G
Sbjct: 439 RGMPG 443
Score = 37.0 bits (84), Expect = 0.009
Identities = 25/73 (34%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 6 RGTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRG--AGAARASG 55
+GT G G PG G+P GP G G PG+ G G G RG +
Sbjct: 754 KGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGP 813
Query: 56 PGGGAPRGPHGGA 68
PG GP G A
Sbjct: 814 PGPPGVVGPQGAA 826
Score = 36.6 bits (83), Expect = 0.012
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G++G+ G G GP G G G G G RG G A+ + GG P GP G
Sbjct: 710 GFPGASGEKGARGLSG-KSGPRGERGPTGPRGQRGPRGATGKSGAKGTS-GGDGPHGPPG 767
Score = 36.2 bits (82), Expect = 0.016
Identities = 29/80 (36%), Positives = 32/80 (40%), Gaps = 19/80 (23%)
Query: 6 RGTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPGG- 58
RG G G PG G P GP G G PG G G +GP+G+ G GP G
Sbjct: 484 RGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQ 543
Query: 59 -GAPR-----------GPHG 66
G P GPHG
Sbjct: 544 QGTPGTQGLPGPQGAIGPHG 563
Score = 35.8 bits (81), Expect = 0.020
Identities = 26/65 (40%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 16 DGPGGPGIPDGPGGNAGGPGEAGATGGR---GPRGA-GAARASGPGG--GAPRGPHGGAA 69
DGP GP GP G G PG+ G G + GP+GA G GP G G P P
Sbjct: 523 DGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGP 582
Query: 70 SGLNG 74
G G
Sbjct: 583 PGHPG 587
Score = 35.8 bits (81), Expect = 0.020
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGG----GAP 61
+G G +G + GP G P GP G G G G +G +G G GP G P
Sbjct: 718 KGARGLSGKS-GPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPH--GPPGERGLPGP 774
Query: 62 RGPHG 66
+GP+G
Sbjct: 775 QGPNG 779
Score = 35.8 bits (81), Expect = 0.020
Identities = 29/89 (32%), Positives = 33/89 (37%), Gaps = 25/89 (28%)
Query: 3 AEGRGTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRGAGAARAS 54
A G G G+ G + PG G P GP G G PG G G G +G
Sbjct: 889 AGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGV------ 942
Query: 55 GPGGGAPRGPHGGAASGLNGCCRCGARGP 83
PG P GP G R G +GP
Sbjct: 943 -PGEKGPIGPTG----------RDGVQGP 960
Score = 35.4 bits (80), Expect = 0.027
Identities = 34/90 (37%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 2 QAEGRGTGGSTGDADGPGGPGIP-----DG-PG--GNAGGPGEAGATGGRGPRGAGAARA 53
+A RG G+ G PG PG+ DG PG G G G+ GA G GP G R
Sbjct: 426 KAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERG 485
Query: 54 SGPGGGAPRGPHGGAASGLNGCCRCGARGP 83
G PRG G SG G G +GP
Sbjct: 486 D-DGEIGPRGLPG--ESGPRGL--LGPKGP 510
Score = 35.4 bits (80), Expect = 0.027
Identities = 27/84 (32%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRG 63
+G GS G PG PG PG G G G G G +GP+G G P
Sbjct: 526 QGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGH 585
Query: 64 PHGGAASGLNGCCRCGARGPESRL 87
P G G G GP+ L
Sbjct: 586 PGKEGPPGTKG--NQGPSGPQGPL 607
Score = 35.4 bits (80), Expect = 0.027
Identities = 32/89 (35%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 6 RGTGGSTGDAD--GPGGPGIPDGPGGNAGG------PGEAGATGGRGPRG-AGAARASGP 56
RG G TG GP G G G +GG PGE G G +GP G G GP
Sbjct: 730 RGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGP 789
Query: 57 GG--GAPRGPHGGAASGLNGCCRCGARGP 83
G G P P G G + G GP
Sbjct: 790 PGKDGLPGHPGQRGEVGFQG--KTGPPGP 816
Score = 35.4 bits (80), Expect = 0.027
Identities = 29/95 (30%), Positives = 33/95 (34%), Gaps = 18/95 (18%)
Query: 7 GTGGSTGDADGPGGPGIPD--------------GPGGNAGGPGEAGATGGRGPRGAGAAR 52
G G+ G PG PG P G G G PG G TG GP G R
Sbjct: 1154 GPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKR 1213
Query: 53 --ASGPGGGAPRGPHG--GAASGLNGCCRCGARGP 83
A PG +G G G + + G GP
Sbjct: 1214 GPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGP 1248
Score = 34.7 bits (78), Expect = 0.045
Identities = 25/66 (37%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 6 RGTGGSTGDADGPG-----GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA 60
RG GS G PG GP P GP G G G+AGA G +G G PG
Sbjct: 1261 RGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGL-IGLIGPPGEQG 1319
Query: 61 PRGPHG 66
+G G
Sbjct: 1320 EKGDRG 1325
Score = 34.3 bits (77), Expect = 0.059
Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGG-GAPRGPH 65
G G G G G+P GP G G G+ G G RG G SGP G P+GP
Sbjct: 458 GLPGEKGHRGDTGAQGLP-GPPGEDGERGDDGEIGPRGLPG-----ESGPRGLLGPKGPP 511
Query: 66 G-GAASGLNGCCRCGARGPESRL 87
G G+ G G +GP+ L
Sbjct: 512 GIPGPPGVRG--MDGPQGPKGSL 532
Score = 33.9 bits (76), Expect = 0.077
Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRGAGAARASGPGG--G 59
G G G PG G+P PG G G G G G GP+ GAA +GP G G
Sbjct: 779 GFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQ--GAAGETGPMGERG 836
Query: 60 APRGPHGGAASGLNG 74
P P GL G
Sbjct: 837 HPGPPGPPGEQGLPG 851
Score = 32.0 bits (71), Expect = 0.29
Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 6 RGTGGSTGDADGPGGPGIPD-----GPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG 58
RG G G+ G PG G G G PG G G GP+G G GP G
Sbjct: 622 RGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPG 680
Score = 31.2 bits (69), Expect = 0.50
Identities = 32/90 (35%), Positives = 34/90 (37%), Gaps = 17/90 (18%)
Query: 7 GTGGSTGDADGPGGPGI-----------PDGPGGNAGGPGEAGATGGRGPRG-AGAARAS 54
G G G A G PG +G G G PG G G GP G G
Sbjct: 1007 GPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDV 1066
Query: 55 GP-GGGAPRGPHGGAASGLNGCCRCGARGP 83
GP G P GP G A G NG G +GP
Sbjct: 1067 GPMGPPGPPGPRGPA--GPNGA--DGPQGP 1092
Score = 30.0 bits (66), Expect = 1.1
Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 7 GTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAP 61
G+ G G G PG P GP G G PG G G G RG + G P
Sbjct: 578 GSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFP 637
Score = 27.3 bits (59), Expect = 7.3
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
Query: 7 GTGGSTGDADGPGGP----GIPDGPGGNAGGPGE 36
G G+ G A GPGGP G+ GP G+ G PGE
Sbjct: 1361 GPKGAKG-ATGPGGPKGEKGV-QGPPGHPGPPGE 1392
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 50.8 bits (120), Expect = 6e-07
Identities = 36/87 (41%), Positives = 39/87 (44%), Gaps = 15/87 (17%)
Query: 6 RGTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA 60
RG G G GGPG+ P GP G AG PGE GA G GP G PG
Sbjct: 984 RGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGP-------PGRPG 1036
Query: 61 PRGPHGGAA-SGLNGCCRCGARGPESR 86
P+GP G A G+ G G GP R
Sbjct: 1037 PQGPPGAAGEKGVPG--EKGPIGPTGR 1061
Score = 48.9 bits (115), Expect = 2e-06
Identities = 37/84 (44%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATG-GRGPRGAGAARASGPGG--GAP 61
GT G G PG PG P DGP G G PGE G G GP G SGP G G+P
Sbjct: 958 GTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSP 1017
Query: 62 RGPHGGAASG--LNGCCRCGARGP 83
G G A SG + R G +GP
Sbjct: 1018 -GERGAAGSGGPIGPPGRPGPQGP 1040
Score = 48.9 bits (115), Expect = 2e-06
Identities = 34/90 (37%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 6 RGTGGSTGDADGPGGPGIP--------DGPGGNAGG---PGEAGATGGRGPRGAGAARAS 54
RG G G++ PG PG P DGP GN G PG+ G G GPRG A+
Sbjct: 1233 RGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGD 1292
Query: 55 GPGGGAPRGPHGGAASGLNG-CCRCGARGP 83
G P P +G NG G RGP
Sbjct: 1293 RGEDGEPGQPGSPGPTGENGPPGPLGKRGP 1322
Score = 45.8 bits (107), Expect = 2e-05
Identities = 32/87 (36%), Positives = 35/87 (40%), Gaps = 19/87 (21%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPG--------------GNAGGPGEAGATGGRGPRGAGAA 51
RG G+ GD G PG P PG G AG PG G GG+G +G A
Sbjct: 1284 RGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGA 1343
Query: 52 RASGPGGGAPRGPHGGAA----SGLNG 74
PG P GP G A GL G
Sbjct: 1344 -IGAPGKTGPVGPAGPAGKPGPDGLRG 1369
Score = 43.5 bits (101), Expect = 1e-04
Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG-GAPRG 63
+GT G+ G+ GP GP P GP G G G G G RGP+G GA G G P G
Sbjct: 1095 KGTKGNKGE-HGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPG 1153
Query: 64 PHG 66
P G
Sbjct: 1154 PIG 1156
Score = 43.5 bits (101), Expect = 1e-04
Identities = 33/72 (45%), Positives = 38/72 (52%), Gaps = 12/72 (16%)
Query: 6 RGTGGSTGDADGPGGP--GIPD-GPGGNAGGPGEAGATG------GRGPRG-AGAARASG 55
RG G G ADGP GP G+ + GP G G PGE+G+ G +GPRG G SG
Sbjct: 1185 RGPAGPNG-ADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESG 1243
Query: 56 -PGGGAPRGPHG 66
PG P GP G
Sbjct: 1244 QPGEPGPPGPKG 1255
Score = 42.7 bits (99), Expect = 2e-04
Identities = 31/80 (38%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
+G G G A PG G DG G G PG+ G G +G G PG P GP
Sbjct: 1065 QGPVGLPGPAGPPGVAG-EDGDKGEVGDPGQKGTKGNKGEHGP-------PGPPGPIGPV 1116
Query: 66 G-GAASGLNGCCRCGARGPE 84
G A+G +G GARGP+
Sbjct: 1117 GQPGAAGADG--EPGARGPQ 1134
Score = 42.4 bits (98), Expect = 2e-04
Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 11/61 (18%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
+G+ G G+ PG G P GPGG G PG AG G +G A+GPGG P+G
Sbjct: 1437 QGSPGQKGEMGIPGASG-PIGPGGPPGLPGPAGPKGAKG--------ATGPGG--PKGEK 1485
Query: 66 G 66
G
Sbjct: 1486 G 1486
Score = 42.0 bits (97), Expect = 3e-04
Identities = 27/68 (39%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 6 RGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARA----SGPGG- 58
RG G +G GP GP GP G G G G +GG GP G R GP G
Sbjct: 828 RGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGF 887
Query: 59 GAPRGPHG 66
P+GP G
Sbjct: 888 PGPKGPPG 895
Score = 41.2 bits (95), Expect = 5e-04
Identities = 28/73 (38%), Positives = 31/73 (42%), Gaps = 13/73 (17%)
Query: 7 GTGGSTGDAD-----------GPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARAS 54
G G TGD GP GP DGP G GG G G G +G P +G+
Sbjct: 1165 GEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQ 1224
Query: 55 G-PGGGAPRGPHG 66
G PG PRG G
Sbjct: 1225 GEPGVKGPRGERG 1237
Score = 40.8 bits (94), Expect = 6e-04
Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 6 RGTGGSTGDADGPG-----GPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG- 58
RG G+ G+ PG GP G G+ G PG G+ G +G G GA+ GPGG
Sbjct: 1401 RGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGP 1460
Query: 59 ---GAPRGPHGGAASGLNG 74
P GP G A G G
Sbjct: 1461 PGLPGPAGPKG--AKGATG 1477
Score = 40.4 bits (93), Expect = 8e-04
Identities = 28/71 (39%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGAGAARASGP-GGGAPRG 63
G G G PG PG+P DGP G+ G G G G +GP G GP G PRG
Sbjct: 667 GPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSG-----PQGPLGYPGPRG 721
Query: 64 PHGGAASGLNG 74
G G+ G
Sbjct: 722 VKG--VDGIRG 730
Score = 40.0 bits (92), Expect = 0.001
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----------GNAGGPGEAGATGGRGPRGAGAARAS- 54
G G G+ G PGI PG G +G PGE G G +GP G + +
Sbjct: 1207 GPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNP 1266
Query: 55 GPGG--GAPRGPHGGAASGLNG 74
GP G G P P G G +G
Sbjct: 1267 GPVGFPGDPGPPGEGGPRGQDG 1288
Score = 39.3 bits (90), Expect = 0.002
Identities = 23/50 (46%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
GP GP GP G G PG G G RGP G RA PG GP G
Sbjct: 402 GPEGPAGLIGPPGIQGNPGPVGDPGERGPPG----RAGLPGSDGAPGPPG 447
Score = 39.3 bits (90), Expect = 0.002
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARA-SGPGGG-APRG 63
+G G+ G +GP GP G G +G GE G G GP G R +GP G P+G
Sbjct: 1140 KGDEGTRG-FNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQG 1198
Query: 64 PHGGAAS 70
P GG +
Sbjct: 1199 PPGGVGN 1205
Score = 39.3 bits (90), Expect = 0.002
Identities = 36/88 (40%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 3 AEGRGTG-GSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-------GAARAS 54
+EGR G G+ GD G PG GP G AG G+ G G RG G+ GA +
Sbjct: 1328 SEGRQGGKGAKGDPGAIGAPG-KTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQA 1386
Query: 55 GPGGGAPRGPHGGAASGLNGCCRCGARG 82
GP G P GP G GL G GA+G
Sbjct: 1387 GPPG--PVGPPG--LPGLRG--DAGAKG 1408
Score = 38.9 bits (89), Expect = 0.002
Identities = 31/80 (38%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG--GAPRG 63
G GS G+ DGP GP GP G+ G PG G G G G G GP G G P
Sbjct: 760 GVPGSRGE-DGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGF 818
Query: 64 PHGGAASGLNGCC-RCGARG 82
P G G + G RG
Sbjct: 819 PGASGEKGARGLSGKSGPRG 838
Score = 38.9 bits (89), Expect = 0.002
Identities = 28/66 (42%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 6 RGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGG-GAPR 62
RG GS G PG PG P G G G PGE G G G G GP G P
Sbjct: 1020 RGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDG-----VQGPVGLPGPA 1074
Query: 63 GPHGGA 68
GP G A
Sbjct: 1075 GPPGVA 1080
Score = 38.5 bits (88), Expect = 0.003
Identities = 30/76 (39%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 7 GTGGSTGDA--DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGP 64
G G +GD GP GP GP G AG G AGA G RG G + G P P
Sbjct: 508 GLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLP 567
Query: 65 ----HGG--AASGLNG 74
H G A GL G
Sbjct: 568 GEKGHRGDTGAQGLPG 583
Score = 38.5 bits (88), Expect = 0.003
Identities = 36/105 (34%), Positives = 38/105 (36%), Gaps = 24/105 (22%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPG--------------GNAGGPGEAGATGGRGPRGAGAA 51
+G G TG G PG P PG G+ G PG G G G RG
Sbjct: 930 QGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGE 989
Query: 52 R-----ASGP---GGGAPRGPHGGAAS-GLNGCCRCGAR-GPESR 86
R A GP G P GP G A S G G G GP R
Sbjct: 990 RGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGR 1034
Score = 37.4 bits (85), Expect = 0.007
Identities = 27/69 (39%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPGG--- 58
+G G TG PG PG DG G+ G G G G GPRG G GP G
Sbjct: 570 KGHRGDTGAQGLPGPPG-EDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRG 628
Query: 59 -GAPRGPHG 66
P+GP G
Sbjct: 629 MDGPQGPKG 637
Score = 37.4 bits (85), Expect = 0.007
Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 8/77 (10%)
Query: 6 RGTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPG 57
RG G G PG PG+ GP G G PG G G +G G +
Sbjct: 909 RGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGD 968
Query: 58 GGAPRGPHGGAASGLNG 74
G P P +GL G
Sbjct: 969 PGPPGAPGKDGPAGLRG 985
Score = 37.0 bits (84), Expect = 0.009
Identities = 28/65 (43%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 17 GPGGP----GIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGGAPRGPHGGA--A 69
GP GP G P GP G G PG G +G GP+G G +GP G A R GA A
Sbjct: 487 GPPGPMGYTGRP-GPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGA 545
Query: 70 SGLNG 74
G+ G
Sbjct: 546 RGMPG 550
Score = 37.0 bits (84), Expect = 0.009
Identities = 25/73 (34%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 6 RGTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRG--AGAARASG 55
+GT G G PG G+P GP G G PG+ G G G RG +
Sbjct: 861 KGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGP 920
Query: 56 PGGGAPRGPHGGA 68
PG GP G A
Sbjct: 921 PGPPGVVGPQGAA 933
Score = 36.6 bits (83), Expect = 0.012
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G++G+ G G GP G G G G G RG G A+ + GG P GP G
Sbjct: 817 GFPGASGEKGARGLSG-KSGPRGERGPTGPRGQRGPRGATGKSGAKGTS-GGDGPHGPPG 874
Score = 36.2 bits (82), Expect = 0.016
Identities = 29/80 (36%), Positives = 32/80 (40%), Gaps = 19/80 (23%)
Query: 6 RGTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPGG- 58
RG G G PG G P GP G G PG G G +GP+G+ G GP G
Sbjct: 591 RGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQ 650
Query: 59 -GAPR-----------GPHG 66
G P GPHG
Sbjct: 651 QGTPGTQGLPGPQGAIGPHG 670
Score = 35.8 bits (81), Expect = 0.020
Identities = 26/65 (40%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 16 DGPGGPGIPDGPGGNAGGPGEAGATGGR---GPRGA-GAARASGPGG--GAPRGPHGGAA 69
DGP GP GP G G PG+ G G + GP+GA G GP G G P P
Sbjct: 630 DGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGP 689
Query: 70 SGLNG 74
G G
Sbjct: 690 PGHPG 694
Score = 35.8 bits (81), Expect = 0.020
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGG----GAP 61
+G G +G + GP G P GP G G G G +G +G G GP G P
Sbjct: 825 KGARGLSGKS-GPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPH--GPPGERGLPGP 881
Query: 62 RGPHG 66
+GP+G
Sbjct: 882 QGPNG 886
Score = 35.8 bits (81), Expect = 0.020
Identities = 29/89 (32%), Positives = 33/89 (37%), Gaps = 25/89 (28%)
Query: 3 AEGRGTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRGAGAARAS 54
A G G G+ G + PG G P GP G G PG G G G +G
Sbjct: 996 AGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGV------ 1049
Query: 55 GPGGGAPRGPHGGAASGLNGCCRCGARGP 83
PG P GP G R G +GP
Sbjct: 1050 -PGEKGPIGPTG----------RDGVQGP 1067
Score = 35.4 bits (80), Expect = 0.027
Identities = 34/90 (37%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 2 QAEGRGTGGSTGDADGPGGPGIP-----DG-PG--GNAGGPGEAGATGGRGPRGAGAARA 53
+A RG G+ G PG PG+ DG PG G G G+ GA G GP G R
Sbjct: 533 KAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERG 592
Query: 54 SGPGGGAPRGPHGGAASGLNGCCRCGARGP 83
G PRG G SG G G +GP
Sbjct: 593 D-DGEIGPRGLPG--ESGPRGL--LGPKGP 617
Score = 35.4 bits (80), Expect = 0.027
Identities = 27/84 (32%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRG 63
+G GS G PG PG PG G G G G G +GP+G G P
Sbjct: 633 QGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGH 692
Query: 64 PHGGAASGLNGCCRCGARGPESRL 87
P G G G GP+ L
Sbjct: 693 PGKEGPPGTKG--NQGPSGPQGPL 714
Score = 35.4 bits (80), Expect = 0.027
Identities = 32/89 (35%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 6 RGTGGSTGDAD--GPGGPGIPDGPGGNAGG------PGEAGATGGRGPRG-AGAARASGP 56
RG G TG GP G G G +GG PGE G G +GP G G GP
Sbjct: 837 RGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGP 896
Query: 57 GG--GAPRGPHGGAASGLNGCCRCGARGP 83
G G P P G G + G GP
Sbjct: 897 PGKDGLPGHPGQRGEVGFQG--KTGPPGP 923
Score = 35.4 bits (80), Expect = 0.027
Identities = 29/95 (30%), Positives = 33/95 (34%), Gaps = 18/95 (18%)
Query: 7 GTGGSTGDADGPGGPGIPD--------------GPGGNAGGPGEAGATGGRGPRGAGAAR 52
G G+ G PG PG P G G G PG G TG GP G R
Sbjct: 1261 GPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKR 1320
Query: 53 --ASGPGGGAPRGPHG--GAASGLNGCCRCGARGP 83
A PG +G G G + + G GP
Sbjct: 1321 GPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGP 1355
Score = 34.7 bits (78), Expect = 0.045
Identities = 25/66 (37%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 6 RGTGGSTGDADGPG-----GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA 60
RG GS G PG GP P GP G G G+AGA G +G G PG
Sbjct: 1368 RGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGL-IGLIGPPGEQG 1426
Query: 61 PRGPHG 66
+G G
Sbjct: 1427 EKGDRG 1432
Score = 34.3 bits (77), Expect = 0.059
Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGG-GAPRGPH 65
G G G G G+P GP G G G+ G G RG G SGP G P+GP
Sbjct: 565 GLPGEKGHRGDTGAQGLP-GPPGEDGERGDDGEIGPRGLPG-----ESGPRGLLGPKGPP 618
Query: 66 G-GAASGLNGCCRCGARGPESRL 87
G G+ G G +GP+ L
Sbjct: 619 GIPGPPGVRG--MDGPQGPKGSL 639
Score = 33.9 bits (76), Expect = 0.077
Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRGAGAARASGPGG--G 59
G G G PG G+P PG G G G G G GP+ GAA +GP G G
Sbjct: 886 GFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQ--GAAGETGPMGERG 943
Query: 60 APRGPHGGAASGLNG 74
P P GL G
Sbjct: 944 HPGPPGPPGEQGLPG 958
Score = 32.0 bits (71), Expect = 0.29
Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 6 RGTGGSTGDADGPGGPGIPD-----GPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG 58
RG G G+ G PG G G G PG G G GP+G G GP G
Sbjct: 729 RGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPG 787
Score = 31.2 bits (69), Expect = 0.50
Identities = 32/90 (35%), Positives = 34/90 (37%), Gaps = 17/90 (18%)
Query: 7 GTGGSTGDADGPGGPGI-----------PDGPGGNAGGPGEAGATGGRGPRG-AGAARAS 54
G G G A G PG +G G G PG G G GP G G
Sbjct: 1114 GPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDV 1173
Query: 55 GP-GGGAPRGPHGGAASGLNGCCRCGARGP 83
GP G P GP G A G NG G +GP
Sbjct: 1174 GPMGPPGPPGPRGPA--GPNGA--DGPQGP 1199
Score = 30.0 bits (66), Expect = 1.1
Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 7 GTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAP 61
G+ G G G PG P GP G G PG G G G RG + G P
Sbjct: 685 GSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFP 744
Score = 27.3 bits (59), Expect = 7.3
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
Query: 7 GTGGSTGDADGPGGP----GIPDGPGGNAGGPGE 36
G G+ G A GPGGP G+ GP G+ G PGE
Sbjct: 1468 GPKGAKG-ATGPGGPKGEKGV-QGPPGHPGPPGE 1499
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 50.8 bits (120), Expect = 6e-07
Identities = 33/74 (44%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 7 GTGGSTGDADGPGGPGIP-----DGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA- 60
G G G+A PG PG+ DGP G G PGE G+ G GP G G GP G A
Sbjct: 68 GKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAG 127
Query: 61 PRGPHGGAASGLNG 74
GP GG GL G
Sbjct: 128 VSGPPGGI--GLRG 139
Score = 47.8 bits (112), Expect = 5e-06
Identities = 33/76 (43%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 10 GSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGP-GGGAPRGPHGGA 68
GS G GP GP P GP G+ G PG G G RGP G GP G RG G A
Sbjct: 551 GSIG-RPGPAGPPGPPGPPGSIGHPGARGPPGYRGP--TGELGDPGPRGNQGDRGDKGAA 607
Query: 69 ASGLNGCCRCGARGPE 84
+GL+G G +GP+
Sbjct: 608 GAGLDG--PEGDQGPQ 621
Score = 47.4 bits (111), Expect = 7e-06
Identities = 30/83 (36%), Positives = 35/83 (42%), Gaps = 15/83 (18%)
Query: 7 GTGGSTGDADGPGGPGIPD--------------GPGGNAGGPGEAGATGGRGPRGAGAAR 52
G+ G G A PG PG P GP G G PG G G RG +GA A
Sbjct: 551 GSIGRPGPAGPPGPPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQGDRGDKGAAGAG 610
Query: 53 ASGP-GGGAPRGPHGGAASGLNG 74
GP G P+GP G + +G
Sbjct: 611 LDGPEGDQGPQGPQGVPGTSKDG 633
Score = 46.6 bits (109), Expect = 1e-05
Identities = 32/83 (38%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRGAGAARASGPGGGA 60
RG G G+A G PG+P G G AG G AGA G +GP GA R G+
Sbjct: 351 RGRAGELGEAGPSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGPPGAPGVRGFQGQKGS 410
Query: 61 PRGPHGGAASGLNGCCRCGARGP 83
P GL G G RGP
Sbjct: 411 MGDPGLPGPQGLRG--DVGDRGP 431
Score = 42.7 bits (99), Expect = 2e-04
Identities = 32/83 (38%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGGAPRGPH 65
G G G+A G PG GP G G PG AG+ G +G RG AG +GP G P P
Sbjct: 313 GLDGQKGEAGRNGAPG-EKGPNGLPGLPGRAGSKGEKGERGRAGELGEAGP-SGEPGVPG 370
Query: 66 GGAASGLNGCC----RCGARGPE 84
G G GA GP+
Sbjct: 371 DAGMPGERGEAGHRGSAGALGPQ 393
Score = 42.0 bits (97), Expect = 3e-04
Identities = 39/99 (39%), Positives = 41/99 (41%), Gaps = 24/99 (24%)
Query: 7 GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATG--------GR----GPRGAGAAR 52
G G G+A PG GP P G G G PGEAG G GR GP+GA R
Sbjct: 44 GQDGIDGEAGPPGLPGPPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGER 103
Query: 53 AS-GP-------GGGAPRGPHGGAASGLNGCCRCGARGP 83
S GP G G P P SG G G RGP
Sbjct: 104 GSLGPPGPPGLGGKGLPGPPGEAGVSGPPG--GIGLRGP 140
Score = 41.2 bits (95), Expect = 5e-04
Identities = 31/76 (40%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 2 QAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGGA 60
+A RG+ G+ G PG PG+ G G G G G GP+G G GPGG A
Sbjct: 380 EAGHRGSAGALGPQGPPGAPGVR----GFQGQKGSMGDPGLPGPQGLRGDVGDRGPGGAA 435
Query: 61 -PRGPHGGAAS-GLNG 74
P+G G A S GL G
Sbjct: 436 GPKGDQGIAGSDGLPG 451
Score = 40.0 bits (92), Expect = 0.001
Identities = 29/63 (46%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 7 GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGGAPRG 63
G GS G PG G G+P GP G AG G G G RGP G +G GP G P G
Sbjct: 101 GERGSLGPPGPPGLGGKGLP-GPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPG--PPG 157
Query: 64 PHG 66
P G
Sbjct: 158 PPG 160
Score = 39.3 bits (90), Expect = 0.002
Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAP--RGP 64
G G GD PG G P G G +G PG G G G G + GAP +GP
Sbjct: 274 GFRGPKGDLGRPGPKGTP-GVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGP 332
Query: 65 HGGAASGLNGCCRCGARG 82
+G GL G R G++G
Sbjct: 333 NG--LPGLPG--RAGSKG 346
Score = 39.3 bits (90), Expect = 0.002
Identities = 30/76 (39%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGG------PGEAGATGGRGPRGAGAARAS-GPGG 58
+G G GD GPGG P G G AG GE G +G GP+G +R GP G
Sbjct: 420 QGLRGDVGDR-GPGGAAGPKGDQGIAGSDGLPGDKGELGPSGLVGPKGESGSRGELGPKG 478
Query: 59 GAPRGPHGGAASGLNG 74
+GP+G SG+ G
Sbjct: 479 --TQGPNG--TSGVQG 490
Score = 38.5 bits (88), Expect = 0.003
Identities = 26/65 (40%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGG----GAP 61
+G G G PG PG+ G G G PGEAG +G P G G GP G P
Sbjct: 97 KGAPGERGSLGPPGPPGL--GGKGLPGPPGEAGVSG--PPGGIGLRGPPGPSGLPGLPGP 152
Query: 62 RGPHG 66
GP G
Sbjct: 153 PGPPG 157
Score = 38.1 bits (87), Expect = 0.004
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 7 GTGGSTGDADGPGGPGIPD-----GPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAP 61
G G GD G G+P GP G G GE+G+ G GP+G + G P
Sbjct: 433 GAAGPKGDQGIAGSDGLPGDKGELGPSGLVGPKGESGSRGELGPKGTQGPNGTSGVQGVP 492
Query: 62 RGPHG 66
GP G
Sbjct: 493 -GPPG 496
Score = 37.7 bits (86), Expect = 0.005
Identities = 34/82 (41%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAP---RG 63
G G G+ G G P GP G AG PG G G RG RG PG P RG
Sbjct: 196 GYKGEQGEVGKDGEKGDP-GPPGPAGLPGSVGLQGPRGLRGL-PGPLGPPGDRGPIGFRG 253
Query: 64 PHG-GAASGLNGCCRCGARGPE 84
P G A G G G RGPE
Sbjct: 254 PPGIPGAPGKAG--DRGERGPE 273
Score = 37.0 bits (84), Expect = 0.009
Identities = 28/64 (43%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 6 RGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPR- 62
RG G G PG GP GP G G PG+AG G RGP G GP G R
Sbjct: 231 RGLRGLPGPLGPPGDRGPIGFRGPPGIPGAPGKAGDRGERGPEG-----FRGPKGDLGRP 285
Query: 63 GPHG 66
GP G
Sbjct: 286 GPKG 289
Score = 35.8 bits (81), Expect = 0.020
Identities = 28/83 (33%), Positives = 32/83 (38%), Gaps = 16/83 (19%)
Query: 7 GTGGSTGDADGPGGPGI--------------PDGPGGNAGGPGEAGATGGRGPRGAGAAR 52
G G G PG PG+ P GP G G PG G TG +G +G +
Sbjct: 148 GLPGPPGPPGPPGHPGVLPEGATDLQCPSICPPGPPGPPGMPGFKGPTGYKGEQGE-VGK 206
Query: 53 ASGPGGGAPRGPHGGAAS-GLNG 74
G P GP G S GL G
Sbjct: 207 DGEKGDPGPPGPAGLPGSVGLQG 229
Score = 35.0 bits (79), Expect = 0.035
Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G GD G GP GP G+ G PG G G GP G G P
Sbjct: 259 GAPGKAGDR-GERGPEGFRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQ 317
Query: 67 GAASGLNGCCRCGARGP 83
+G NG G +GP
Sbjct: 318 KGEAGRNGA--PGEKGP 332
Score = 34.7 bits (78), Expect = 0.045
Identities = 26/68 (38%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHGGAASGLNGCC 76
GP GP P G G G GEAG G GP G A G P GL G
Sbjct: 32 GPPGPPGPPGKPGQDGIDGEAGPPGLPGPPGPKGAPGKPGKPGEAGLPGLPGVDGLTG-- 89
Query: 77 RCGARGPE 84
R G GP+
Sbjct: 90 RDGPPGPK 97
Score = 32.7 bits (73), Expect = 0.17
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAA 51
+GT G G + G PG P GP G G PG G TG G G A+
Sbjct: 477 KGTQGPNGTSGVQGVPG-PPGPLGLQGVPGVPGITGKPGVPGKEAS 521
Score = 32.7 bits (73), Expect = 0.17
Identities = 30/94 (31%), Positives = 35/94 (37%), Gaps = 20/94 (21%)
Query: 7 GTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGG--------RGPRGAGA 50
G GS G G PG GP GN G G+ GA G +GP+G
Sbjct: 566 GPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQGDRGDKGAAGAGLDGPEGDQGPQGPQG 625
Query: 51 ARASGPGG--GAPRGPHGGAASGLNGCCRCGARG 82
+ G GAP P GL G GA+G
Sbjct: 626 VPGTSKDGQDGAPGEPGPPGDPGLPGA--IGAQG 657
Score = 32.7 bits (73), Expect = 0.17
Identities = 28/73 (38%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 6 RGTGGSTGDA-DGPGGPGIPDGPGGNAG--GPGEAGATGGRGPRG----AGAARASGPGG 58
RG G+ G DGP G P GP G G G+ GA G GP G GA A G G
Sbjct: 601 RGDKGAAGAGLDGPEGDQGPQGPQGVPGTSKDGQDGAPGEPGPPGDPGLPGAIGAQGTPG 660
Query: 59 GAPRGPHGGAASG 71
GA G
Sbjct: 661 ICDTSACQGAVLG 673
Score = 32.3 bits (72), Expect = 0.23
Identities = 25/59 (42%), Positives = 27/59 (45%), Gaps = 11/59 (18%)
Query: 18 PGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGG--GAPRGPHGGAASGLNG 74
PG PG P GP G PG+ G G GP G GP G GAP P +GL G
Sbjct: 31 PGPPG-PPGPPGK---PGQDGIDGEAGPPG-----LPGPPGPKGAPGKPGKPGEAGLPG 80
Score = 32.0 bits (71), Expect = 0.29
Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 15/70 (21%)
Query: 3 AEGRGTGGSTGDADGPGGP-GIPD-------------GPGGNAGGPGEAGATGGRGPRGA 48
A G G G GD GP GP G+P GP G+ G PG GA G G
Sbjct: 606 AAGAGLDGPEGD-QGPQGPQGVPGTSKDGQDGAPGEPGPPGDPGLPGAIGAQGTPGICDT 664
Query: 49 GAARASGPGG 58
A + + GG
Sbjct: 665 SACQGAVLGG 674
Score = 30.0 bits (66), Expect = 1.1
Identities = 23/67 (34%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRG--PRGAGAARASGPGGG 59
G G G + PGG G+ PG G G PG G G G P GA +
Sbjct: 121 GPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPGPPGPPGHPGVLPEGATDLQCPSICPP 180
Query: 60 APRGPHG 66
P GP G
Sbjct: 181 GPPGPPG 187
Score = 29.6 bits (65), Expect = 1.5
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG 47
+G GS G+ GP G P+G G G PG G G +G G
Sbjct: 465 KGESGSRGEL-GPKGTQGPNGTSGVQGVPGPPGPLGLQGVPG 505
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 50.8 bits (120), Expect = 6e-07
Identities = 29/60 (48%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 10 GSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHGGAA 69
G+ G GG G DGPGG GGPG G GG GP G G G GGG G GG+A
Sbjct: 130 GAGGAGAAAGGGGAHDGPGG-GGGPGGGGGPGG-GPGGGGGGGPGGGGGGPGGGLLGGSA 187
Score = 48.1 bits (113), Expect = 4e-06
Identities = 27/58 (46%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHGGAASGLNG 74
G GG G G GG GPG G GG G G G G GGG P G GG GL G
Sbjct: 130 GAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGG---PGGGGGGGPGGGGGGPGGGLLG 184
Score = 48.1 bits (113), Expect = 4e-06
Identities = 32/67 (47%), Positives = 32/67 (47%), Gaps = 11/67 (16%)
Query: 3 AEGRGTGGSTGDA-DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAP 61
A G G G A DGPGG G GPGG G G G GG GP G G GPGGG
Sbjct: 131 AGGAGAAAGGGGAHDGPGGGG---GPGGGGGPGGGPGGGGGGGPGGGG----GGPGGGLL 183
Query: 62 RG---PH 65
G PH
Sbjct: 184 GGSAHPH 190
Score = 33.1 bits (74), Expect = 0.13
Identities = 29/84 (34%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 5 GRGTGGSTGDADGPGGPGIP-DGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA--- 60
G G GG G GPGG G G GG G G G + P S P A
Sbjct: 150 GGGPGGGGGPGGGPGGGGGGGPGGGGGGPGGGLLGGSAHPHPHMHSLGHLSHPAAAAAMN 209
Query: 61 -PRG-PHGG--AASGLNGCCRCGA 80
P G PH G AA+ +G A
Sbjct: 210 MPSGLPHPGLVAAAAHHGAAAAAA 233
Score = 32.7 bits (73), Expect = 0.17
Identities = 22/55 (40%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 37 AGATGGRGPRGAGAARASGPGGGAP---RGPHGGAASGLNGCCRCGARGPESRLL 88
AGA G G G A GGG P GP GG G G G GP LL
Sbjct: 129 AGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGPGGGLL 183
>gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens]
Length = 1796
Score = 50.4 bits (119), Expect = 8e-07
Identities = 35/84 (41%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 6 RGTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRG----AGAARASGPGGG 59
R G G+ PG PG P GP G G PG AG G G RG G G G
Sbjct: 1650 RTVQGPPGEPGRPGSPGAPGEQGPPGTPGFPGNAGVPGTPGERGLTGIKGEKGNPGVGTQ 1709
Query: 60 APRGPHGGAASGLNGCCRCGARGP 83
PRGP G A G +G R G+ GP
Sbjct: 1710 GPRGPPGPA--GPSGESRPGSPGP 1731
Score = 50.4 bits (119), Expect = 8e-07
Identities = 33/83 (39%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGP-GGGAPRGPH 65
G+ G+ G+ PG PG P G G G PGE G TG +G +G GP G P GP
Sbjct: 1663 GSPGAPGEQGPPGTPGFP-GNAGVPGTPGERGLTGIKGEKGNPGVGTQGPRGPPGPAGPS 1721
Query: 66 GGAASGLNGCCRC-GARGPESRL 87
G + G G G RGP L
Sbjct: 1722 GESRPGSPGPPGSPGPRGPPGHL 1744
Score = 43.1 bits (100), Expect = 1e-04
Identities = 33/92 (35%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 7 GTGGSTGDA-----DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAP 61
G GS G DG GP P GP G G PG G TG GP+GA PG
Sbjct: 1545 GRDGSPGQRGLPGKDGSSGPPGPPGPIGIPGTPGVPGITGSMGPQGA-LGPPGVPGAKGE 1603
Query: 62 RGPHGGAASGLNGCCRCGARGPESRLLEFYLA 93
RG G S R AR +L++ ++A
Sbjct: 1604 RGERGDLQS--QAMVRSVARQVCEQLIQSHMA 1633
Score = 42.0 bits (97), Expect = 3e-04
Identities = 28/61 (45%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 17 GPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG-AGAARASGPGGGAPRGPHGGAASGLN 73
GP GP P GPG G G GE G G GPRG G GP G P+GP G + G+
Sbjct: 1462 GPAGP--PGGPGLRGPKGQQGEPGPKGPDGPRGEIGLPGPQGPPG--PQGPSGLSIQGMP 1517
Query: 74 G 74
G
Sbjct: 1518 G 1518
Score = 40.8 bits (94), Expect = 6e-04
Identities = 30/84 (35%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 5 GRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASG-PGGGAPRG 63
G G G G PG G PDGP G G PG G G +GP G G PG +G
Sbjct: 1469 GPGLRGPKGQQGEPGPKG-PDGPRGEIGLPGPQGPPGPQGPSGLSIQGMPGMPGEKGEKG 1527
Query: 64 PHG-----GAASGLNGCCRCGARG 82
G G G+ R G+ G
Sbjct: 1528 DTGLPGPQGIPGGVGSPGRDGSPG 1551
Score = 40.4 bits (93), Expect = 8e-04
Identities = 32/84 (38%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGGAPRGP 64
+G G G+ G G+P GP G GG G G G G RG G +SGP G P GP
Sbjct: 1514 QGMPGMPGEKGEKGDTGLP-GPQGIPGGVGSPGRDGSPGQRGLPGKDGSSGPPG--PPGP 1570
Query: 65 HG-GAASGLNGCCRCGARGPESRL 87
G G+ G G+ GP+ L
Sbjct: 1571 IGIPGTPGVPGI--TGSMGPQGAL 1592
Score = 31.2 bits (69), Expect = 0.50
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 5 GRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGP 64
G GS G PG PG P GP G+ G PG G +G G + A G P P
Sbjct: 1722 GESRPGSPGP---PGSPG-PRGPPGHLGVPGPQGPSGQPGYCDPSSCSAYGVRAPHPDQP 1777
Score = 28.1 bits (61), Expect = 4.3
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 7 GTGGSTGDA-DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGGAPRGP 64
G G +G++ G GP G G G PG G G +GP G G S R P
Sbjct: 1716 GPAGPSGESRPGSPGPP---GSPGPRGPPGHLGVPGPQGPSGQPGYCDPSSCSAYGVRAP 1772
Query: 65 H 65
H
Sbjct: 1773 H 1773
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 50.1 bits (118), Expect = 1e-06
Identities = 33/73 (45%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASG--------PG 57
RG G +G A PG PGIP PG AGG GEAG G RG RG R PG
Sbjct: 2024 RGPPGPSGLAGEPGKPGIPGLPG-RAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPG 2082
Query: 58 GGAPRGPHGGAAS 70
P GP G S
Sbjct: 2083 TPGPPGPPGPKVS 2095
Score = 45.4 bits (106), Expect = 3e-05
Identities = 30/68 (44%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPG---EAGATGGRGPRGAGAAR-----ASGPGG 58
G GS G+ GP GP GP G+ G PG EAG G RGP G +R A PG
Sbjct: 1459 GQPGSPGE-QGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGA 1517
Query: 59 GAPRGPHG 66
P GP G
Sbjct: 1518 KGPEGPPG 1525
Score = 45.1 bits (105), Expect = 3e-05
Identities = 35/77 (45%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 10 GSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG-GAPRGPHG- 66
G GD G GP P G G G PGE G G RGP G G GP G RGP G
Sbjct: 1719 GEPGDR-GQEGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGL 1777
Query: 67 GAASGLNGCCRCGARGP 83
SGL+G + GA GP
Sbjct: 1778 DGRSGLDG--KPGAAGP 1792
Score = 44.7 bits (104), Expect = 4e-05
Identities = 35/86 (40%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGN---AGGPGEAGATGGRGPRG-AGAARASGPGG--- 58
+G G G+ PG G P GP GN AG PG G+ G RGP G G GP G
Sbjct: 2694 KGDQGEKGERGTPGIGGFP-GPSGNDGSAGPPGPPGSVGPRGPEGLQGQKGERGPPGERV 2752
Query: 59 -GAPRGPHGGAASGLNGCCRCGARGP 83
GAP P G G R G GP
Sbjct: 2753 VGAPGVPGAPGERGEQG--RPGPAGP 2776
Score = 44.3 bits (103), Expect = 6e-05
Identities = 35/84 (41%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 3 AEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG--G 59
A +G G G PG PG P G G PG G+ G GPRG G GP G G
Sbjct: 1292 ATAKGERGFPGADGRPGSPGRAGNP-GTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPG 1350
Query: 60 APRGPHGGAASGLNGCCRCGARGP 83
AP GG GL G R G GP
Sbjct: 1351 APGQVIGGEGPGLPG--RKGDPGP 1372
Score = 43.1 bits (100), Expect = 1e-04
Identities = 27/73 (36%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 6 RGTGGSTGDADGPGGPGIPD-----GPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGG 59
+G G+ G G GPG+P GP G G G G G RGP G G A G
Sbjct: 1346 KGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDR 1405
Query: 60 APRGPHGGAASGL 72
RGP G G+
Sbjct: 1406 GERGPPGPGEGGI 1418
Score = 42.7 bits (99), Expect = 2e-04
Identities = 27/67 (40%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 6 RGTGGSTGDADGPGGPGI------PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGG 59
RG G GD G PG+ P GP G AG PG+ G G G R G A PG
Sbjct: 2002 RGLKGDRGDPGPQGPPGLALGERGPPGPSGLAGEPGKPGIPGLPG-RAGGVGEAGRPGER 2060
Query: 60 APRGPHG 66
RG G
Sbjct: 2061 GERGEKG 2067
Score = 42.4 bits (98), Expect = 2e-04
Identities = 31/91 (34%), Positives = 35/91 (38%), Gaps = 22/91 (24%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGA--------ARASGPGG 58
G G GD PG PG+P G AG G GA G RGP G R PG
Sbjct: 1634 GEVGEKGDEGPPGDPGLP----GKAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGS 1689
Query: 59 GAPRGPHGGAASGLNGCCRCGARGPESRLLE 89
P+G G G GP RL++
Sbjct: 1690 SGPKGDRG----------EPGPPGPPGRLVD 1710
Score = 42.0 bits (97), Expect = 3e-04
Identities = 34/94 (36%), Positives = 38/94 (40%), Gaps = 15/94 (15%)
Query: 2 QAEGRGTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRGAGAARA 53
+A GT G+ G PG PG P GP G G PG+ GG GP G
Sbjct: 1312 RAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQ--VIGGEGPGLPGRKGD 1369
Query: 54 SGPGG-GAPRGPHGG----AASGLNGCCRCGARG 82
GP G PRGP G GL G G +G
Sbjct: 1370 PGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKG 1403
Score = 42.0 bits (97), Expect = 3e-04
Identities = 36/95 (37%), Positives = 36/95 (37%), Gaps = 22/95 (23%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARA-SGPGGG----- 59
RG G GD PG P G GN G PGE G G G G R GP GG
Sbjct: 2131 RGVPGIKGDRGEPG----PRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPG 2186
Query: 60 --------APRGPHGGAASGLNGCCRCGARGPESR 86
P GP G SGL G G GP R
Sbjct: 2187 PPGAPGLAGPAGPQG--PSGLKG--EPGETGPPGR 2217
Score = 42.0 bits (97), Expect = 3e-04
Identities = 31/88 (35%), Positives = 36/88 (40%), Gaps = 14/88 (15%)
Query: 7 GTGGSTGDADGPGGPGIP-----DGPGGNAGGPGEAGATGGRGPRG-------AGAARAS 54
G G G+ PG PG DG G+ G PG G G GP+G G A
Sbjct: 2245 GLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVG 2304
Query: 55 GPGGGAPRGPHGGAASGLNGCCRCGARG 82
PG +G GG A L G GA+G
Sbjct: 2305 LPGAKGEKGAPGGLAGDLVG--EPGAKG 2330
Score = 41.6 bits (96), Expect = 4e-04
Identities = 42/117 (35%), Positives = 48/117 (41%), Gaps = 38/117 (32%)
Query: 6 RGTGGSTGDADG------PGGPGIPDGPG--GNAGG-----------------PGEAGAT 40
RG G G +G PG PG+P PG G G PG+ G+
Sbjct: 1405 RGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSP 1464
Query: 41 GGRGPRG-------AGAARASGPGGGA----PRGPHGGAAS-GLNGCC-RCGARGPE 84
G +GPRG G GP G A RGP G A S GL G R GA+GPE
Sbjct: 1465 GEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPE 1521
Score = 41.6 bits (96), Expect = 4e-04
Identities = 33/101 (32%), Positives = 38/101 (37%), Gaps = 19/101 (18%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----------------AG 49
RG G G+A G G P GP G+ G PG AG G +GP G G
Sbjct: 1482 RGFPGPLGEAGEKGERG-PPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPG 1540
Query: 50 AARASGPGGGAPRGPHG--GAASGLNGCCRCGARGPESRLL 88
GP P+G G G A G RGP +L
Sbjct: 1541 DPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGLVL 1581
Score = 41.6 bits (96), Expect = 4e-04
Identities = 32/76 (42%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
Query: 7 GTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGG--RGPRGA-GAARASGPGG 58
G G GD PG PG+ P GP G G PGE G G GP GA G GP G
Sbjct: 2177 GPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSG 2236
Query: 59 GAPRGPHGGAASGLNG 74
GP G + GL G
Sbjct: 2237 LV--GPQG--SPGLPG 2248
Score = 41.2 bits (95), Expect = 5e-04
Identities = 30/75 (40%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 6 RGTGGSTGDA--DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPGGG 59
RG G G GP GP P G G+ G PG G G GP+G G +GP G
Sbjct: 2158 RGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGR 2217
Query: 60 APRGPHGGAASGLNG 74
GP G A GL G
Sbjct: 2218 GLTGPTG--AVGLPG 2230
Score = 41.2 bits (95), Expect = 5e-04
Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 5 GRGTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPR 62
GRG G TG PG PG GP G+ G PG+ G TG G G A G+P
Sbjct: 2216 GRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPG 2275
Query: 63 GP 64
P
Sbjct: 2276 VP 2277
Score = 40.8 bits (94), Expect = 6e-04
Identities = 33/81 (40%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPGG--GAPR 62
RG G TG A PG GP G G PG G G GPRG G G G G P
Sbjct: 1594 RGPIGLTGRAGPPGD----SGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPG 1649
Query: 63 GPHGGAASGLNGCCRCGARGP 83
P GL G G RGP
Sbjct: 1650 LPGKAGERGLRGA--PGVRGP 1668
Score = 40.0 bits (92), Expect = 0.001
Identities = 31/81 (38%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 6 RGTGGSTGDADGPG-----------GPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARA 53
RG G GD PG G P GP G AG G+ G G G RG G
Sbjct: 1763 RGPAGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQGLPGP 1822
Query: 54 SGPGGGAPRGPHGGAASGLNG 74
SGP G P P GLNG
Sbjct: 1823 SGP-PGLPGKPGEDGKPGLNG 1842
Score = 39.7 bits (91), Expect = 0.001
Identities = 31/82 (37%), Positives = 35/82 (42%), Gaps = 14/82 (17%)
Query: 7 GTGGSTGDADGPGGPGIPD-----GPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAP 61
G G G A PG GIP GP G+ G PG +G G +G G G PG
Sbjct: 2419 GPSGERGLAGPPGREGIPGPLGPPGPPGSVGPPGASGLKGDKGDPGVGL-----PGPRGE 2473
Query: 62 RGPHGGAASGLNGCCRCGARGP 83
RG G G +G R G GP
Sbjct: 2474 RGEPG--IRGEDG--RPGQEGP 2491
Score = 39.3 bits (90), Expect = 0.002
Identities = 32/86 (37%), Positives = 33/86 (38%), Gaps = 10/86 (11%)
Query: 6 RGTGGSTGDADGP------GGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGG 59
RG G GD P G PG GP G+ G PG G G G GA PG
Sbjct: 1666 RGPVGEKGDQGDPGEDGRNGSPG-SSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDR 1724
Query: 60 APRGPHGGAAS-GLNGCCRCGARGPE 84
GP G GL G G RG E
Sbjct: 1725 GQEGPRGPKGDPGLPGA--PGERGIE 1748
Score = 39.3 bits (90), Expect = 0.002
Identities = 25/63 (39%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 7 GTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGGAPRG 63
G G+ GD GP G G G G PGE G G GP+G G PG P G
Sbjct: 2324 GEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAPGPKGFKGDPGVGVPGSPGPPG 2383
Query: 64 PHG 66
P G
Sbjct: 2384 PPG 2386
Score = 38.9 bits (89), Expect = 0.002
Identities = 32/81 (39%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGG--GAPRG 63
G G G PG PG DG G G G +G G GP+G GA GP G G P G
Sbjct: 1836 GKPGLNGKNGEPGDPG-EDGRKGEKGDSGASGREGRDGPKGERGAPGILGPQGPPGLP-G 1893
Query: 64 PHGGAASGLNGCCRCGARGPE 84
P G G G G GP+
Sbjct: 1894 PVGPPGQGFPGV--PGGTGPK 1912
Score = 38.9 bits (89), Expect = 0.002
Identities = 26/68 (38%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G TG G PG P G G AG PG G G GP G + PG +G G
Sbjct: 2404 GFPGQTGPRGEMGQPG-PSGERGLAGPPGREGIPGPLGPPGPPGS-VGPPGASGLKGDKG 2461
Query: 67 GAASGLNG 74
GL G
Sbjct: 2462 DPGVGLPG 2469
Score = 38.5 bits (88), Expect = 0.003
Identities = 28/70 (40%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGP 64
G G G PG PG+P G G G PG A A G RG GA S G P P
Sbjct: 1260 GEMGLRGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTP 1319
Query: 65 HGGAASGLNG 74
A GL G
Sbjct: 1320 ---GAPGLKG 1326
Score = 37.4 bits (85), Expect = 0.007
Identities = 26/69 (37%), Positives = 27/69 (39%), Gaps = 12/69 (17%)
Query: 4 EGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAG--------ATGGRGPRGAGAARASG 55
EG G G GD GP P GP G G PG G G +G RG G
Sbjct: 1359 EGPGLPGRKGDP----GPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGPPGPG 1414
Query: 56 PGGGAPRGP 64
GG AP P
Sbjct: 1415 EGGIAPGEP 1423
Score = 37.4 bits (85), Expect = 0.007
Identities = 28/65 (43%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 6 RGTGGSTGDADGPGG--PGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASG-PGGGAP 61
RG G G+ PG PG P GP G+ G G G TG GP G +G G PG P
Sbjct: 1565 RGATGVQGERGPPGLVLPGDP-GPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPGP 1623
Query: 62 RGPHG 66
GP G
Sbjct: 1624 PGPVG 1628
Score = 37.4 bits (85), Expect = 0.007
Identities = 30/85 (35%), Positives = 33/85 (38%), Gaps = 15/85 (17%)
Query: 7 GTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGG 58
G G GD G PG+ P GP G G PGE G G G G PG
Sbjct: 1797 GAAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGKPGEDGKPGLNGKNG----EPGDPGE 1852
Query: 59 GAPRGPHG-GAASGLNGCCRCGARG 82
+G G ASG G R G +G
Sbjct: 1853 DGRKGEKGDSGASGREG--RDGPKG 1875
Score = 37.4 bits (85), Expect = 0.007
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G G+ GP G G+ GP G G PG G +G GP+G+ G P P
Sbjct: 2204 GLKGEPGET-GPPGRGLT-GPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGR 2261
Query: 67 GAASGLNG 74
ASG +G
Sbjct: 2262 DGASGKDG 2269
Score = 37.0 bits (84), Expect = 0.009
Identities = 35/96 (36%), Positives = 35/96 (36%), Gaps = 28/96 (29%)
Query: 7 GTGGSTGD--ADGPGGPGIPDGPG--------GNAGGPGEAGATGGRGPRG--------- 47
G G GD PG PG P PG G G PG G G GPRG
Sbjct: 2363 GPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPSG 2422
Query: 48 ----AGAARASG-PGGGAPRGPHGG----AASGLNG 74
AG G PG P GP G ASGL G
Sbjct: 2423 ERGLAGPPGREGIPGPLGPPGPPGSVGPPGASGLKG 2458
Score = 36.6 bits (83), Expect = 0.012
Identities = 28/73 (38%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 6 RGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRG 63
RG G G G PG+ P G G+ G PG G +G G GAA SGP G A +
Sbjct: 1745 RGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGK--PGAAGPSGPNGAAGKA 1802
Query: 64 --PHGGAASGLNG 74
P GL G
Sbjct: 1803 GDPGRDGLPGLRG 1815
Score = 36.6 bits (83), Expect = 0.012
Identities = 26/68 (38%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPG---EAGATGGRGPRG-AGAARASGPGGGAPR 62
G G GD+ G G DGP G G PG G G GP G G PGG P+
Sbjct: 1854 GRKGEKGDSGASGREG-RDGPKGERGAPGILGPQGPPGLPGPVGPPGQGFPGVPGGTGPK 1912
Query: 63 GPHGGAAS 70
G G S
Sbjct: 1913 GDRGETGS 1920
Score = 36.6 bits (83), Expect = 0.012
Identities = 28/72 (38%), Positives = 30/72 (41%), Gaps = 12/72 (16%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----------AGAARASG 55
+G G G PG G GP G+ G PG G G GPRG G A G
Sbjct: 2107 QGPPGLKGAKGEPGSNG-DQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEG 2165
Query: 56 -PGGGAPRGPHG 66
PG PRGP G
Sbjct: 2166 KPGLQGPRGPPG 2177
Score = 36.6 bits (83), Expect = 0.012
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
RG G G +GP G P G G G G+ G+ G +G +G A PG PRG
Sbjct: 2480 RGEDGRPGQ-EGPRGLTGPPGSRGERGEKGDVGSAGLKGDKGDSAVILGPPG---PRGAK 2535
Query: 66 G 66
G
Sbjct: 2536 G 2536
Score = 36.2 bits (82), Expect = 0.016
Identities = 29/75 (38%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 3 AEGR-GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEA--GATGGRGPRGAGAARASGPG 57
A GR G G G+ PG GP P G G G PG+ G GG GP+G S
Sbjct: 1864 ASGREGRDGPKGERGAPGILGPQGPPGLPGPVGPPGQGFPGVPGGTGPKGDRGETGSKGE 1923
Query: 58 GGAP--RGPHGGAAS 70
G P RG G S
Sbjct: 1924 QGLPGERGLRGEPGS 1938
Score = 35.8 bits (81), Expect = 0.020
Identities = 34/101 (33%), Positives = 36/101 (35%), Gaps = 23/101 (22%)
Query: 6 RGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA---------GAARAS 54
+G G G+ GPG GI G G G PG G G GP G GA
Sbjct: 1399 KGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLP 1458
Query: 55 G----PGGGAPRGPHG--------GAASGLNGCCRCGARGP 83
G PG PRGP G G L G RGP
Sbjct: 1459 GQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGP 1499
Score = 35.8 bits (81), Expect = 0.020
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
RG G GD GP G G G+ G PG+ G+ G G RG + G P P
Sbjct: 2541 RGPRGLDGDK-GPRGDNGDPGDKGSKGEPGDKGSAGLPGLRGLLGPQGQPGAAGIPGDPG 2599
Query: 66 GGAASGLNG 74
G+ G
Sbjct: 2600 SPGKDGVPG 2608
Score = 35.0 bits (79), Expect = 0.035
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 13 GDADGPGGPGIPD--GPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHGGAAS 70
G PG G+ GP G+ G PG GA G +GP G+ A+ GA P +
Sbjct: 1254 GQKGEPGEMGLRGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRA 1313
Query: 71 GLNG 74
G G
Sbjct: 1314 GNPG 1317
Score = 35.0 bits (79), Expect = 0.035
Identities = 26/71 (36%), Positives = 29/71 (40%), Gaps = 11/71 (15%)
Query: 7 GTGGSTGDADGPGGPGI-------PDGPGGNAGGPGEAGAT---GGRGPRGAGAARASGP 56
G G G+ PG P + P G G+ G G GAT G RGP G GP
Sbjct: 1528 GRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGLVLPGDPGP 1587
Query: 57 -GGGAPRGPHG 66
G RGP G
Sbjct: 1588 KGDPGDRGPIG 1598
Score = 35.0 bits (79), Expect = 0.035
Identities = 22/68 (32%), Positives = 25/68 (36%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G GD+ GP P G G+ G G G G +GPRG G P
Sbjct: 2514 GLKGDKGDSAVILGPPGPRGAKGDMGERGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGS 2573
Query: 67 GAASGLNG 74
GL G
Sbjct: 2574 AGLPGLRG 2581
Score = 34.7 bits (78), Expect = 0.045
Identities = 29/87 (33%), Positives = 32/87 (36%), Gaps = 18/87 (20%)
Query: 10 GSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG--- 66
G GD+ G PG +GP G PGE G G RG G G P GP G
Sbjct: 1979 GPKGDSGEQGPPG-KEGP---IGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPSGLAG 2034
Query: 67 -----------GAASGLNGCCRCGARG 82
G A G+ R G RG
Sbjct: 2035 EPGKPGIPGLPGRAGGVGEAGRPGERG 2061
Score = 34.3 bits (77), Expect = 0.059
Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 14 DADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHGGAASG 71
D GPG G PG G G PG G G +G RG + G PRG G G
Sbjct: 2097 DEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGD-RGEPGPRGQDGN--PG 2153
Query: 72 LNGCCRCGARGPESR 86
L G G GPE +
Sbjct: 2154 LPG--ERGMAGPEGK 2166
Score = 33.9 bits (76), Expect = 0.077
Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 13/70 (18%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G G PG GIP G+ G PG+ G G RG +G G PRG G
Sbjct: 2578 GLRGLLGPQGQPGAAGIP----GDPGSPGKDGVPGIRGEKG-------DVGFMGPRGLKG 2626
Query: 67 GAASGLNGCC 76
G+ G C
Sbjct: 2627 --ERGVKGAC 2634
Score = 32.3 bits (72), Expect = 0.23
Identities = 32/93 (34%), Positives = 36/93 (38%), Gaps = 23/93 (24%)
Query: 7 GTGGSTGDADGPGGPGIP--------DGPGGNAGGPGEAGATGGRGPRG-------AGAA 51
G G G + PG G+ DG G G GE G G G G G+A
Sbjct: 2662 GEPGVPGQSGAPGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGTPGIGGFPGPSGNDGSA 2721
Query: 52 RASGPGGG-APRGPHGGAASGLNGCCRCGARGP 83
GP G PRGP GL G + G RGP
Sbjct: 2722 GPPGPPGSVGPRGP-----EGLQG--QKGERGP 2747
Score = 31.6 bits (70), Expect = 0.38
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 27 PGGNAGGPGEAGATGGRGPRGAGA--ARASGPGGGAPRGPHGGAAS 70
P G G PGE G G GP G R PG P+GP G A +
Sbjct: 1252 PKGQKGEPGEMGLRGQVGPPGDPGLPGRTGAPG---PQGPPGSATA 1294
Score = 31.6 bits (70), Expect = 0.38
Identities = 27/81 (33%), Positives = 29/81 (35%), Gaps = 8/81 (9%)
Query: 2 QAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASG-- 55
+ E GG GD G G G G G GEAG G G G GA G
Sbjct: 2309 KGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAPGPKGFK 2368
Query: 56 --PGGGAPRGPHGGAASGLNG 74
PG G P P G+ G
Sbjct: 2369 GDPGVGVPGSPGPPGPPGVKG 2389
Score = 31.2 bits (69), Expect = 0.50
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 13/66 (19%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNA---GGPGEAGATGG---RGPRGAGAARASGPGGGA 60
G+ G G+ G G+ G +A G PG GA G RGPRG G
Sbjct: 2499 GSRGERGEKGDVGSAGLKGDKGDSAVILGPPGPRGAKGDMGERGPRGL-------DGDKG 2551
Query: 61 PRGPHG 66
PRG +G
Sbjct: 2552 PRGDNG 2557
Score = 30.8 bits (68), Expect = 0.66
Identities = 29/85 (34%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 7 GTGGSTGDADGPG----GP-GIPDGPG--GNAGGPGEAGATGGRGPRGAGAARA--SGPG 57
G G GD PG GP G PG G G PG+ G G GP G+ R G
Sbjct: 2452 GASGLKGDKGDPGVGLPGPRGERGEPGIRGEDGRPGQEGPRGLTGPPGSRGERGEKGDVG 2511
Query: 58 GGAPRGPHGGAASGLNGCCRCGARG 82
+G G +A L GA+G
Sbjct: 2512 SAGLKGDKGDSAVILGPPGPRGAKG 2536
Score = 28.1 bits (61), Expect = 4.3
Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 11/63 (17%)
Query: 23 IPDGPGGNAGGPGEAGATGGRGPRGAGAARA--SGPGGGAPRGPHGGAASGLNGCCRCGA 80
+P+ G G GE G G GP G R G P+GP G A G
Sbjct: 1973 VPERRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLA---------LGE 2023
Query: 81 RGP 83
RGP
Sbjct: 2024 RGP 2026
Score = 28.1 bits (61), Expect = 4.3
Identities = 24/88 (27%), Positives = 25/88 (28%), Gaps = 20/88 (22%)
Query: 7 GTGGSTGDADGPGGPGIPD--------------------GPGGNAGGPGEAGATGGRGPR 46
G G GD PG G+P G G G GE G G GP
Sbjct: 2590 GAAGIPGDPGSPGKDGVPGIRGEKGDVGFMGPRGLKGERGVKGACGLDGEKGDKGEAGPP 2649
Query: 47 GAGAARASGPGGGAPRGPHGGAASGLNG 74
G G P P A G G
Sbjct: 2650 GRPGLAGHKGEMGEPGVPGQSGAPGKEG 2677
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 50.1 bits (118), Expect = 1e-06
Identities = 37/94 (39%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
+G G G PG PG+P G G AG GEAG G RGP G G G P+G
Sbjct: 500 QGPKGEPGSIGLPGQPGVP-GEDGAAGKKGEAGLPGARGPEG-----PPGKGQPGPKGDE 553
Query: 66 GGAASGLNGCCRCGARGPESRLLEFYLAMPFATP 99
G S N R G GPE E + PF P
Sbjct: 554 GKKGSKGNQGQR-GLPGPEGPKGEPGIMGPFGMP 586
Score = 46.6 bits (109), Expect = 1e-05
Identities = 37/95 (38%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Query: 1 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNA-----GGPGEAGATGGRGPRGAGAARASG 55
M G G+ G G GP GP P GP G G G+ G TG RGP G G G
Sbjct: 446 MGIPGIGSQGEQG-IQGPIGPPGPQGPAGQGLPGSKGEVGQMGPTGPRGPVGIGVQGPKG 504
Query: 56 PGG-----GAPRGPHGGAASGLNGCCRC-GARGPE 84
G G P P A+G G GARGPE
Sbjct: 505 EPGSIGLPGQPGVPGEDGAAGKKGEAGLPGARGPE 539
Score = 41.6 bits (96), Expect = 4e-04
Identities = 30/79 (37%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
+G G G PG PGI G G G G+ G G GP G G PG PRGP
Sbjct: 342 KGEPGPPGPYGSPGAPGI--GQQGIKGERGQEGRPGAPGPIGVGE-----PGQPGPRGPE 394
Query: 66 GGAASGLNGCCRCGARGPE 84
G G G G GP+
Sbjct: 395 G--VPGERGLPGEGFPGPK 411
Score = 40.8 bits (94), Expect = 6e-04
Identities = 35/95 (36%), Positives = 39/95 (41%), Gaps = 19/95 (20%)
Query: 6 RGTGGSTGDADGPGG--PGIPDGPGGNAGGP--------------GEAGATGGRGPRGAG 49
+G G G PG PG P GP G+ GGP G G G RGP GA
Sbjct: 574 KGEPGIMGPFGMPGTSIPG-PPGPKGDRGGPGIPGFKGEPGLSIRGPKGVQGPRGPVGAP 632
Query: 50 AARASG-PGGGAPRG-PHGGAASGLNGCCRCGARG 82
+ G PG PRG P GL G GA+G
Sbjct: 633 GLKGDGYPGVPGPRGLPGPPGPMGLRGVGDTGAKG 667
Score = 40.0 bits (92), Expect = 0.001
Identities = 31/88 (35%), Positives = 35/88 (39%), Gaps = 19/88 (21%)
Query: 6 RGTGGSTG-DADG----PGGPGIPDGPG----------GNAGGPGEAGATGGRGPRGAGA 50
RG G+ G DG PG G+P PG G G PG G G GPRG G
Sbjct: 626 RGPVGAPGLKGDGYPGVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRGVGT 685
Query: 51 ARASGPGG----GAPRGPHGGAASGLNG 74
G G P GP G + G+ G
Sbjct: 686 QGPKGDTGQKGLPGPPGPPGYGSQGIKG 713
Score = 39.7 bits (91), Expect = 0.001
Identities = 26/63 (41%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 5 GRGTGGSTGDADGPGGPGIPDGPG-GNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRG 63
G GT G GD G PG P PG G+ G GE G G GP+G G G +G
Sbjct: 682 GVGTQGPKGDTGQKGLPGPPGPPGYGSQGIKGEQGPQGFPGPKG-----TMGHGLPGQKG 736
Query: 64 PHG 66
HG
Sbjct: 737 EHG 739
Score = 38.9 bits (89), Expect = 0.002
Identities = 30/82 (36%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 7 GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGP 64
G G GD PG GP P G G G PG+ G G +G +G PG P G
Sbjct: 301 GKPGIKGDKGSPGPYGPKGPRGIQGITGPPGDPGPKGFQGNKGE-------PGPPGPYGS 353
Query: 65 HGGAASGLNGCCRCGARGPESR 86
G G G G RG E R
Sbjct: 354 PGAPGIGQQGI--KGERGQEGR 373
Score = 38.1 bits (87), Expect = 0.004
Identities = 32/81 (39%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRG 63
RG G G A GP G G P PG G G PGE G G P G + GP G P+G
Sbjct: 368 RGQEGRPG-APGPIGVGEPGQPGPRGPEGVPGERGLPGEGFPGPKGEKGSEGPTG--PQG 424
Query: 64 PHGGAASGLNGCCRCGARGPE 84
G + G G G GP+
Sbjct: 425 LQGLSIKGEKG--DIGPVGPQ 443
Score = 37.0 bits (84), Expect = 0.009
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Query: 6 RGTGGSTGDAD----GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAP 61
RG G+ G+A G GPG G G+ G GE G G +G +G+ PG P
Sbjct: 265 RGPKGNPGNAQKGEAGERGPGGIPGYKGDKGERGECGKPGIKGDKGS-------PGPYGP 317
Query: 62 RGPHG 66
+GP G
Sbjct: 318 KGPRG 322
Score = 36.2 bits (82), Expect = 0.016
Identities = 20/41 (48%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 18 PGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGG 58
PG PG P G GN G GE G G G G A GPGG
Sbjct: 247 PGDPG-PPGTHGNPGIKGERGPKGNPGNAQKGEAGERGPGG 286
Score = 36.2 bits (82), Expect = 0.016
Identities = 28/81 (34%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 5 GRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGP 64
G+G G GD G G G G G G G G GP G GP G P+G
Sbjct: 543 GKGQPGPKGDEGKKGSKG-NQGQRGLPGPEGPKGEPGIMGPFGMPGTSIPGPPG--PKGD 599
Query: 65 HGG-AASGLNGCCRCGARGPE 84
GG G G RGP+
Sbjct: 600 RGGPGIPGFKGEPGLSIRGPK 620
Score = 28.5 bits (62), Expect = 3.3
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 5 GRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG 47
G G G G+ G G G G G PG G G +GP+G
Sbjct: 728 GHGLPGQKGEHGERGDVG-KKGDKGEIGEPGSPGKQGLQGPKG 769
>gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo
sapiens]
Length = 2971
Score = 49.7 bits (117), Expect = 1e-06
Identities = 30/69 (43%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 6 RGTGGSTGDADGPGGPGIP--------DGPGGNAGGPGEAGATGGRGPRGAGAARASGPG 57
RG G+ G+ GPG PG GP G AG PG G G GPRG+G A A PG
Sbjct: 1997 RGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGA-AGAPG 2055
Query: 58 GGAPRGPHG 66
GP G
Sbjct: 2056 ERGRTGPLG 2064
Score = 47.4 bits (111), Expect = 7e-06
Identities = 35/87 (40%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 6 RGTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPG 57
+GT G+ G A G PG+ P G GG AG PGE G TG G +G GP
Sbjct: 2018 QGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPG--EPGPK 2075
Query: 58 GG-APRGPHGGAA-SGLNGCCRCGARG 82
GG RGP G G +G G RG
Sbjct: 2076 GGIGNRGPRGETGDDGRDGVGSEGRRG 2102
Score = 45.4 bits (106), Expect = 3e-05
Identities = 28/80 (35%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 4 EGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAG--------AARASG 55
+G G+ G G G PG P GP GN G PG G TG +G RG +
Sbjct: 2093 DGVGSEGRRGKKGERGFPGYP-GPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGD 2151
Query: 56 PGGGAPRGPHGGAASGLNGC 75
PG P GP G ++ C
Sbjct: 2152 PGYPGPAGPKGNRGDSIDQC 2171
Score = 44.7 bits (104), Expect = 4e-05
Identities = 33/93 (35%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 3 AEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPR 62
++ RG G TGD G G+P G G GGPGE G GG G RG A+ + G G P
Sbjct: 1958 SQERGPKGETGDL---GPMGVP-GRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPG 2013
Query: 63 GPHGGAASGLNGCCRCGARGPESRLLEFYLAMP 95
G G G GP + E ++ P
Sbjct: 2014 FEGEQGTRGAQG--PAGPAGPPGLIGEQGISGP 2044
Score = 41.6 bits (96), Expect = 4e-04
Identities = 27/62 (43%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGGAPRGP 64
RG+GG+ G A G G P G G G PG G G RGPRG G G G RG
Sbjct: 2045 RGSGGAAG-APGERGRTGPLGRKGEPGEPGPKGGIGNRGPRGETGDDGRDGVGSEGRRGK 2103
Query: 65 HG 66
G
Sbjct: 2104 KG 2105
Score = 38.9 bits (89), Expect = 0.002
Identities = 40/125 (32%), Positives = 46/125 (36%), Gaps = 17/125 (13%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
RG G GD G PG PG ++ G G TG GP G R PGG G +
Sbjct: 1936 RGEKGERGDVGIRGDPG---NPGQDSQERGPKGETGDLGPMGV-PGRDGVPGGPGETGKN 1991
Query: 66 GGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPGVLLKE 125
GG G RGP + P E E R A P PG L+ E
Sbjct: 1992 GG----------FGRRGPPG--AKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPG-LIGE 2038
Query: 126 FTVSG 130
+SG
Sbjct: 2039 QGISG 2043
Score = 37.0 bits (84), Expect = 0.009
Identities = 30/74 (40%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAG-----ATGGRGPRGAGAARASGPGGGA 60
RG G G PG PG P G GN G GE G G G RG R PG
Sbjct: 2057 RGRTGPLGRKGEPGEPG-PKGGIGNRGPRGETGDDGRDGVGSEGRRGKKGERGF-PGYPG 2114
Query: 61 PRGPHGGAASGLNG 74
P+G G GLNG
Sbjct: 2115 PKGNPG--EPGLNG 2126
Score = 33.9 bits (76), Expect = 0.077
Identities = 22/62 (35%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARA--SGPGGGAPRGP 64
G G G G GIP G G G PG+ G G RGP G + PG +G
Sbjct: 1832 GQRGDRGPIGSIGPKGIP-GEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGS 1890
Query: 65 HG 66
G
Sbjct: 1891 RG 1892
Score = 30.8 bits (68), Expect = 0.66
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGG------RGPRGAGAARASGPGGG 59
RG G G+ G G+ DG G+ G PG +G G +GPRG R G
Sbjct: 1891 RGFPGEKGEVGEIGLDGL-DGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRG 1949
Query: 60 APRGP 64
P P
Sbjct: 1950 DPGNP 1954
Score = 29.6 bits (65), Expect = 1.5
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 22 GIPDGPGGNAGGPGEAGATGGRGPRGAGAARA--SGPGGGAPRGPHG-GAASGLNGC 75
G+P G G G G+ G +G G R GG RGP G G GC
Sbjct: 1825 GVPCKCSGQRGDRGPIGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGC 1881
>gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo
sapiens]
Length = 3177
Score = 49.7 bits (117), Expect = 1e-06
Identities = 30/69 (43%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 6 RGTGGSTGDADGPGGPGIP--------DGPGGNAGGPGEAGATGGRGPRGAGAARASGPG 57
RG G+ G+ GPG PG GP G AG PG G G GPRG+G A A PG
Sbjct: 2203 RGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGA-AGAPG 2261
Query: 58 GGAPRGPHG 66
GP G
Sbjct: 2262 ERGRTGPLG 2270
Score = 47.4 bits (111), Expect = 7e-06
Identities = 35/87 (40%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 6 RGTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPG 57
+GT G+ G A G PG+ P G GG AG PGE G TG G +G GP
Sbjct: 2224 QGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPG--EPGPK 2281
Query: 58 GG-APRGPHGGAA-SGLNGCCRCGARG 82
GG RGP G G +G G RG
Sbjct: 2282 GGIGNRGPRGETGDDGRDGVGSEGRRG 2308
Score = 45.4 bits (106), Expect = 3e-05
Identities = 28/80 (35%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 4 EGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAG--------AARASG 55
+G G+ G G G PG P GP GN G PG G TG +G RG +
Sbjct: 2299 DGVGSEGRRGKKGERGFPGYP-GPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGD 2357
Query: 56 PGGGAPRGPHGGAASGLNGC 75
PG P GP G ++ C
Sbjct: 2358 PGYPGPAGPKGNRGDSIDQC 2377
Score = 44.7 bits (104), Expect = 4e-05
Identities = 33/93 (35%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 3 AEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPR 62
++ RG G TGD G G+P G G GGPGE G GG G RG A+ + G G P
Sbjct: 2164 SQERGPKGETGDL---GPMGVP-GRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPG 2219
Query: 63 GPHGGAASGLNGCCRCGARGPESRLLEFYLAMP 95
G G G GP + E ++ P
Sbjct: 2220 FEGEQGTRGAQG--PAGPAGPPGLIGEQGISGP 2250
Score = 41.6 bits (96), Expect = 4e-04
Identities = 27/62 (43%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGGAPRGP 64
RG+GG+ G A G G P G G G PG G G RGPRG G G G RG
Sbjct: 2251 RGSGGAAG-APGERGRTGPLGRKGEPGEPGPKGGIGNRGPRGETGDDGRDGVGSEGRRGK 2309
Query: 65 HG 66
G
Sbjct: 2310 KG 2311
Score = 38.9 bits (89), Expect = 0.002
Identities = 40/125 (32%), Positives = 46/125 (36%), Gaps = 17/125 (13%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
RG G GD G PG PG ++ G G TG GP G R PGG G +
Sbjct: 2142 RGEKGERGDVGIRGDPG---NPGQDSQERGPKGETGDLGPMGV-PGRDGVPGGPGETGKN 2197
Query: 66 GGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPGVLLKE 125
GG G RGP + P E E R A P PG L+ E
Sbjct: 2198 GG----------FGRRGPPG--AKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPG-LIGE 2244
Query: 126 FTVSG 130
+SG
Sbjct: 2245 QGISG 2249
Score = 37.0 bits (84), Expect = 0.009
Identities = 30/74 (40%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAG-----ATGGRGPRGAGAARASGPGGGA 60
RG G G PG PG P G GN G GE G G G RG R PG
Sbjct: 2263 RGRTGPLGRKGEPGEPG-PKGGIGNRGPRGETGDDGRDGVGSEGRRGKKGERGF-PGYPG 2320
Query: 61 PRGPHGGAASGLNG 74
P+G G GLNG
Sbjct: 2321 PKGNPG--EPGLNG 2332
Score = 33.9 bits (76), Expect = 0.077
Identities = 22/62 (35%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARA--SGPGGGAPRGP 64
G G G G GIP G G G PG+ G G RGP G + PG +G
Sbjct: 2038 GQRGDRGPIGSIGPKGIP-GEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGS 2096
Query: 65 HG 66
G
Sbjct: 2097 RG 2098
Score = 30.8 bits (68), Expect = 0.66
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGG------RGPRGAGAARASGPGGG 59
RG G G+ G G+ DG G+ G PG +G G +GPRG R G
Sbjct: 2097 RGFPGEKGEVGEIGLDGL-DGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRG 2155
Query: 60 APRGP 64
P P
Sbjct: 2156 DPGNP 2160
Score = 29.6 bits (65), Expect = 1.5
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 22 GIPDGPGGNAGGPGEAGATGGRGPRGAGAARA--SGPGGGAPRGPHG-GAASGLNGC 75
G+P G G G G+ G +G G R GG RGP G G GC
Sbjct: 2031 GVPCKCSGQRGDRGPIGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGC 2087
>gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo
sapiens]
Length = 2570
Score = 49.7 bits (117), Expect = 1e-06
Identities = 30/69 (43%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 6 RGTGGSTGDADGPGGPGIP--------DGPGGNAGGPGEAGATGGRGPRGAGAARASGPG 57
RG G+ G+ GPG PG GP G AG PG G G GPRG+G A A PG
Sbjct: 1596 RGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGA-AGAPG 1654
Query: 58 GGAPRGPHG 66
GP G
Sbjct: 1655 ERGRTGPLG 1663
Score = 47.4 bits (111), Expect = 7e-06
Identities = 35/87 (40%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 6 RGTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPG 57
+GT G+ G A G PG+ P G GG AG PGE G TG G +G GP
Sbjct: 1617 QGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPG--EPGPK 1674
Query: 58 GG-APRGPHGGAA-SGLNGCCRCGARG 82
GG RGP G G +G G RG
Sbjct: 1675 GGIGNRGPRGETGDDGRDGVGSEGRRG 1701
Score = 45.4 bits (106), Expect = 3e-05
Identities = 28/80 (35%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 4 EGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAG--------AARASG 55
+G G+ G G G PG P GP GN G PG G TG +G RG +
Sbjct: 1692 DGVGSEGRRGKKGERGFPGYP-GPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGD 1750
Query: 56 PGGGAPRGPHGGAASGLNGC 75
PG P GP G ++ C
Sbjct: 1751 PGYPGPAGPKGNRGDSIDQC 1770
Score = 44.7 bits (104), Expect = 4e-05
Identities = 33/93 (35%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 3 AEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPR 62
++ RG G TGD G G+P G G GGPGE G GG G RG A+ + G G P
Sbjct: 1557 SQERGPKGETGDL---GPMGVP-GRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPG 1612
Query: 63 GPHGGAASGLNGCCRCGARGPESRLLEFYLAMP 95
G G G GP + E ++ P
Sbjct: 1613 FEGEQGTRGAQG--PAGPAGPPGLIGEQGISGP 1643
Score = 41.6 bits (96), Expect = 4e-04
Identities = 27/62 (43%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGGAPRGP 64
RG+GG+ G A G G P G G G PG G G RGPRG G G G RG
Sbjct: 1644 RGSGGAAG-APGERGRTGPLGRKGEPGEPGPKGGIGNRGPRGETGDDGRDGVGSEGRRGK 1702
Query: 65 HG 66
G
Sbjct: 1703 KG 1704
Score = 38.9 bits (89), Expect = 0.002
Identities = 40/125 (32%), Positives = 46/125 (36%), Gaps = 17/125 (13%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
RG G GD G PG PG ++ G G TG GP G R PGG G +
Sbjct: 1535 RGEKGERGDVGIRGDPG---NPGQDSQERGPKGETGDLGPMGV-PGRDGVPGGPGETGKN 1590
Query: 66 GGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPGVLLKE 125
GG G RGP + P E E R A P PG L+ E
Sbjct: 1591 GG----------FGRRGPPG--AKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPG-LIGE 1637
Query: 126 FTVSG 130
+SG
Sbjct: 1638 QGISG 1642
Score = 37.0 bits (84), Expect = 0.009
Identities = 30/74 (40%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAG-----ATGGRGPRGAGAARASGPGGGA 60
RG G G PG PG P G GN G GE G G G RG R PG
Sbjct: 1656 RGRTGPLGRKGEPGEPG-PKGGIGNRGPRGETGDDGRDGVGSEGRRGKKGERGF-PGYPG 1713
Query: 61 PRGPHGGAASGLNG 74
P+G G GLNG
Sbjct: 1714 PKGNPG--EPGLNG 1725
Score = 33.9 bits (76), Expect = 0.077
Identities = 22/62 (35%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARA--SGPGGGAPRGP 64
G G G G GIP G G G PG+ G G RGP G + PG +G
Sbjct: 1431 GQRGDRGPIGSIGPKGIP-GEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGS 1489
Query: 65 HG 66
G
Sbjct: 1490 RG 1491
Score = 30.8 bits (68), Expect = 0.66
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGG------RGPRGAGAARASGPGGG 59
RG G G+ G G+ DG G+ G PG +G G +GPRG R G
Sbjct: 1490 RGFPGEKGEVGEIGLDGL-DGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRG 1548
Query: 60 APRGP 64
P P
Sbjct: 1549 DPGNP 1553
Score = 29.6 bits (65), Expect = 1.5
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 22 GIPDGPGGNAGGPGEAGATGGRGPRGAGAARA--SGPGGGAPRGPHG-GAASGLNGC 75
G+P G G G G+ G +G G R GG RGP G G GC
Sbjct: 1424 GVPCKCSGQRGDRGPIGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGC 1480
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 49.7 bits (117), Expect = 1e-06
Identities = 34/83 (40%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 6 RGTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRG 63
RG G G G PG+P GP GN G PG G G GP G PG P G
Sbjct: 1173 RGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGI----QGSPGKEGPPG 1228
Query: 64 PHGGAASGLNGCCRCGARGPESR 86
P G SGL G G G E R
Sbjct: 1229 PQG--PSGLPGI--PGEEGKEGR 1247
Score = 49.3 bits (116), Expect = 2e-06
Identities = 28/61 (45%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 7 GTGGSTGDAD-GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
G+ GS GD G GP P GP G+ G PG G G GP+G A R PG RGP
Sbjct: 1034 GSPGSRGDPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGP-AGRDGAPGNPGERGPP 1092
Query: 66 G 66
G
Sbjct: 1093 G 1093
Score = 47.8 bits (112), Expect = 5e-06
Identities = 34/75 (45%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 7 GTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRG-AGAARASG-PGGG 59
G G+ G A PG PG P GP G+ G PG G G G RG GAA G PG
Sbjct: 907 GAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPV 966
Query: 60 APRGPHGGAASGLNG 74
PRG G A GL G
Sbjct: 967 GPRGDPG--APGLPG 979
Score = 45.8 bits (107), Expect = 2e-05
Identities = 29/63 (46%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 7 GTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGGRGPRG-AGAARASGPGGGAPRG 63
G G G PG PG+P GPGG+ G PGE G G GP G G GP G P G
Sbjct: 705 GIPGLLGLQGPPGPPGVPGPPGPGGSPGLPGEIGFPGKPGPPGPTGPPGKDGPNG--PPG 762
Query: 64 PHG 66
P G
Sbjct: 763 PPG 765
Score = 43.5 bits (101), Expect = 1e-04
Identities = 28/68 (41%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGP------GGNAGGPGEAGATGGRGPRGAGAARASG--PGG 58
G G GD GP GP P GP G+ G PGE G +G G +G+ S PG
Sbjct: 1303 GLPGKDGDT-GPTGPQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGF 1361
Query: 59 GAPRGPHG 66
PRGP G
Sbjct: 1362 LGPRGPPG 1369
Score = 42.0 bits (97), Expect = 3e-04
Identities = 29/70 (41%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGG--GAPRGP 64
G G G+ PG G+ +GP G G GE GA G G G G GP G G P G
Sbjct: 1512 GRAGPMGEPGRPGQGGL-EGPSGPIGPKGERGAKGDPGAPGVGLRGEMGPPGIPGQP-GE 1569
Query: 65 HGGAASGLNG 74
G A GL G
Sbjct: 1570 PGYAKDGLPG 1579
Score = 41.6 bits (96), Expect = 4e-04
Identities = 31/77 (40%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-GNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
G+ G G PG PG+P PG G G PG G+ G GP G AA G RG
Sbjct: 961 GSPGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSPGLPGPLGTKAA------CGKVRGSE 1014
Query: 66 GGAASGLNGCCRCGARG 82
A L G C G RG
Sbjct: 1015 NCA---LGGQCVKGDRG 1028
Score = 41.2 bits (95), Expect = 5e-04
Identities = 27/69 (39%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G GD G PG+P G GE GA G RG +GA PG P GP G
Sbjct: 629 GPQGEKGDVGPAGPPGVPGSVVQQEGLKGEQGAPGPRGHQGA----PGPPGARGPIGPEG 684
Query: 67 -GAASGLNG 74
GL G
Sbjct: 685 RDGPPGLQG 693
Score = 41.2 bits (95), Expect = 5e-04
Identities = 31/79 (39%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 6 RGTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRGAGAARASG-P 56
+G G GD PG PG+ P GP G G G+ GA G P AG A G
Sbjct: 867 QGPKGEKGDPGLPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHG--APGAAGNPGAPGHV 924
Query: 57 GGGAPRGPHGG-AASGLNG 74
G P GP G A GL G
Sbjct: 925 GAPGPSGPPGSVGAPGLRG 943
Score = 41.2 bits (95), Expect = 5e-04
Identities = 28/66 (42%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGA-GAARASG-PGGGAPR 62
G G TG G G PG GN G PG GA G GP G+ GA G PG R
Sbjct: 892 GPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGER 951
Query: 63 GPHGGA 68
G G A
Sbjct: 952 GEKGAA 957
Score = 41.2 bits (95), Expect = 5e-04
Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGP 64
G G TGD+ PG G G G G PG+ G TG GP+G R G+P P
Sbjct: 1276 GFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSP 1335
Query: 65 HGGAASGLNG 74
SG G
Sbjct: 1336 GEPGPSGTPG 1345
Score = 41.2 bits (95), Expect = 5e-04
Identities = 26/61 (42%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPH 65
RG G GD PGG G P G+ G PG G TG GP+G PG P GP
Sbjct: 1395 RGDPGIKGDKGPPGGKGQP----GDPGIPGHKGHTGLMGPQGL-------PGENGPVGPP 1443
Query: 66 G 66
G
Sbjct: 1444 G 1444
Score = 39.7 bits (91), Expect = 0.001
Identities = 30/72 (41%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 4 EGR----GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASG--- 55
EGR G G G A PG PG P+G G G G G +G GPRG +GA G
Sbjct: 1245 EGRDGKPGPPGEPGKAGEPGLPG-PEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEG 1303
Query: 56 -PGGGAPRGPHG 66
PG GP G
Sbjct: 1304 LPGKDGDTGPTG 1315
Score = 38.5 bits (88), Expect = 0.003
Identities = 32/97 (32%), Positives = 37/97 (38%), Gaps = 19/97 (19%)
Query: 6 RGTGGSTGDADGPGGPGIP---------------DGPGGNAGGPGEAGATGGRG-PRGAG 49
+G G G+A G PG+P GP G G PG G G +G P G
Sbjct: 833 KGDRGEKGEAGPAGPPGLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELG 892
Query: 50 AARASG-PGGGAPRGPHG--GAASGLNGCCRCGARGP 83
+G PG G HG GAA GA GP
Sbjct: 893 PQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGP 929
Score = 38.5 bits (88), Expect = 0.003
Identities = 35/96 (36%), Positives = 38/96 (39%), Gaps = 16/96 (16%)
Query: 2 QAEGRGTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRG----AGAARASG 55
Q +G G G PG PG P DG G AG PG G+ G GP G +G G
Sbjct: 1181 QKGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPG 1240
Query: 56 PGG--------GAPRGPHGGAASGLNGCCRCGARGP 83
G G P P GL G GARGP
Sbjct: 1241 EEGKEGRDGKPGPPGEPGKAGEPGLPG--PEGARGP 1274
Score = 38.5 bits (88), Expect = 0.003
Identities = 31/82 (37%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G +G PG G+P G G+ G G G G RGP G + S PG P G G
Sbjct: 1288 GPRGESGAMGLPGQEGLP-GKDGDTGPTGPQGPQGPRGPPGKNGSPGS-PGEPGPSGTPG 1345
Query: 67 GAAS-GLNGCCR----CGARGP 83
S G NG G RGP
Sbjct: 1346 QKGSKGENGSPGLPGFLGPRGP 1367
Score = 38.5 bits (88), Expect = 0.003
Identities = 25/66 (37%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 7 GTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAP 61
G GS G+ PG PG P G G G PG+ G G G G R PG
Sbjct: 1345 GQKGSKGENGSPGLPGFLGPRGPPGEPGEKGVPGKEGVPGKPGEPGFKGERGD-PGIKGD 1403
Query: 62 RGPHGG 67
+GP GG
Sbjct: 1404 KGPPGG 1409
Score = 37.7 bits (86), Expect = 0.005
Identities = 36/102 (35%), Positives = 38/102 (37%), Gaps = 32/102 (31%)
Query: 6 RGTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRGA--------- 48
+GT G G+ G PG P GP G AG GE G G GP G
Sbjct: 595 KGTRGEKGERGLDGFPGKPGDTGQQGRPGPSGVAGPQGEKGDVGPAGPPGVPGSVVQQEG 654
Query: 49 --GAARASGPGG--GAPRGPHGGAASGLNGCCRCGARGPESR 86
G A GP G GAP GP G G GPE R
Sbjct: 655 LKGEQGAPGPRGHQGAP-GPPGAR----------GPIGPEGR 685
Score = 37.4 bits (85), Expect = 0.007
Identities = 25/74 (33%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRGAGAARASGPGGGA 60
RG G G PG PG PG G G PG G G RGP G + G
Sbjct: 1323 RGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGPRGPPGEPGEKGVPGKEGV 1382
Query: 61 PRGPHGGAASGLNG 74
P P G G
Sbjct: 1383 PGKPGEPGFKGERG 1396
Score = 37.0 bits (84), Expect = 0.009
Identities = 33/94 (35%), Positives = 35/94 (37%), Gaps = 22/94 (23%)
Query: 7 GTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRGA-GAARASGPG 57
G G GD PG PG GP G G PG AG G +G RGA G G
Sbjct: 1126 GLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEVGQKGDQ 1185
Query: 58 G--------GAPRGPHGGAASGLNGCCRCGARGP 83
G G P P A G+ GA GP
Sbjct: 1186 GHPGVPGFMGPPGNPGPPGADGI-----AGAAGP 1214
Score = 36.6 bits (83), Expect = 0.012
Identities = 27/78 (34%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G G G PG+P GP G G PG G G +G RG R G P P
Sbjct: 560 GLPGEVGMRGPQGPPGLP-GPPGRVGAPGLQGERGEKGTRGEKGERGL---DGFPGKPGD 615
Query: 67 GAASGLNGCCRCGARGPE 84
G G G GP+
Sbjct: 616 TGQQGRPG--PSGVAGPQ 631
Score = 36.6 bits (83), Expect = 0.012
Identities = 27/69 (39%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G G+ G G P GP G G GE G G G RG + GAP GP G
Sbjct: 1234 GLPGIPGEEGKEGRDGKP-GPPGEPGKAGEPGLPGPEGARGPPGFKGHTGDSGAP-GPRG 1291
Query: 67 -GAASGLNG 74
A GL G
Sbjct: 1292 ESGAMGLPG 1300
Score = 36.2 bits (82), Expect = 0.016
Identities = 32/82 (39%), Positives = 35/82 (42%), Gaps = 13/82 (15%)
Query: 6 RGTGGSTGDADGPGGPGI---PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPR 62
+G G G A PG PG +G G G PG G G GP G A GP G R
Sbjct: 631 QGEKGDVGPAGPPGVPGSVVQQEGLKGEQGAPGPRGHQGAPGPPG-----ARGPIGPEGR 685
Query: 63 -GPHGGAASGLNGCCRCGARGP 83
GP G GL G + G GP
Sbjct: 686 DGPPG--LQGLRG--KKGDMGP 703
Score = 35.8 bits (81), Expect = 0.020
Identities = 31/84 (36%), Positives = 34/84 (40%), Gaps = 19/84 (22%)
Query: 7 GTGGSTGDADGPGGPGIP--------DGPGGNAGGPGEAGATGGRGPRGAGAARASGPGG 58
G+ G G+ PG PG P DGP G G PG G G RG G PG
Sbjct: 729 GSPGLPGEIGFPGKPGPPGPTGPPGKDGPNGPPGPPGTKGEPGERGEDGL-------PGK 781
Query: 59 GAPRGPHGGAASGLNGCCRCGARG 82
RG G GL G R G +G
Sbjct: 782 PGLRGEIG--EQGLAG--RPGEKG 801
Score = 35.0 bits (79), Expect = 0.035
Identities = 23/60 (38%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGP 64
G G G PG PG PG G G PGE G G RG G + G G P P
Sbjct: 1357 GLPGFLGPRGPPGEPGEKGVPGKEGVPGKPGEPGFKGERGDPGIKGDKGPPGGKGQPGDP 1416
Score = 34.3 bits (77), Expect = 0.059
Identities = 29/73 (39%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 6 RGTGGSTGD--ADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGG--GAP 61
RG G+ G A GP GP DGP G G G+ G G P G GP G G P
Sbjct: 665 RGHQGAPGPPGARGPIGPEGRDGPPGLQGLRGKKGDMG--PPGIPGLLGLQGPPGPPGVP 722
Query: 62 RGPHGGAASGLNG 74
P G + GL G
Sbjct: 723 GPPGPGGSPGLPG 735
Score = 34.3 bits (77), Expect = 0.059
Identities = 28/66 (42%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHGGAASGLNGCC 76
GP GP DG G AG GE G G G G SGP G P+G G A G G
Sbjct: 1500 GPPGPPGKDGLPGRAGPMGEPGRPGQGGLEG-----PSGPIG--PKGERG--AKGDPGAP 1550
Query: 77 RCGARG 82
G RG
Sbjct: 1551 GVGLRG 1556
Score = 34.3 bits (77), Expect = 0.059
Identities = 26/69 (37%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 7 GTGGSTGDADGPGGPGI----PDGPGGNAGGPGEA-----GATGGRGPRGAGAARASGPG 57
G G G PG PG+ GP G G PGE G G GP+G A PG
Sbjct: 1536 GPKGERGAKGDPGAPGVGLRGEMGPPGIPGQPGEPGYAKDGLPGIPGPQGE-TGPAGHPG 1594
Query: 58 GGAPRGPHG 66
P GP G
Sbjct: 1595 LPGPPGPPG 1603
Score = 33.9 bits (76), Expect = 0.077
Identities = 28/76 (36%), Positives = 30/76 (39%), Gaps = 16/76 (21%)
Query: 7 GTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRG-------PRGAGAA 51
G G+ G A G PGI P GP G +G PG G G G P G A
Sbjct: 1201 GPPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKA 1260
Query: 52 RASG-PGGGAPRGPHG 66
G PG RGP G
Sbjct: 1261 GEPGLPGPEGARGPPG 1276
Score = 33.5 bits (75), Expect = 0.10
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 6 RGTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGA---TGGRGPRGAGAAR----ASGP 56
+ + G G PG G+P GP G G PG+ G +G GP+G A+ A G
Sbjct: 1493 KSSQGRPGPPGPPGKDGLPGRAGPMGEPGRPGQGGLEGPSGPIGPKGERGAKGDPGAPGV 1552
Query: 57 GGGAPRGPHG 66
G GP G
Sbjct: 1553 GLRGEMGPPG 1562
Score = 32.7 bits (73), Expect = 0.17
Identities = 25/63 (39%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG-AGAARASGPGG--GAP 61
G G G PG PG PG G G PG+ G G G +G AG G G GAP
Sbjct: 750 GPPGKDGPNGPPGPPGTKGEPGERGEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAP 809
Query: 62 RGP 64
P
Sbjct: 810 GFP 812
Score = 32.7 bits (73), Expect = 0.17
Identities = 29/76 (38%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPGGG 59
G GG G + GP GP G G+ G PG G G GP G G A+ PG
Sbjct: 1524 GQGGLEGPS-GPIGPKGERGAKGDPGAPG-VGLRGEMGPPGIPGQPGEPGYAKDGLPGIP 1581
Query: 60 APRGPHGGAA-SGLNG 74
P+G G A GL G
Sbjct: 1582 GPQGETGPAGHPGLPG 1597
Score = 32.0 bits (71), Expect = 0.29
Identities = 29/85 (34%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGA---ARASGPGGGAPRG 63
G G GD G G+P G G+ G GEAG G G G + PG P+G
Sbjct: 813 GVRGEKGDQGEKGELGLP-GLKGDRGEKGEAGPAGPPGLPGTTSLFTPHPRMPGEQGPKG 871
Query: 64 PHGG----AASGLNGCCRCGARGPE 84
G GL G R G GP+
Sbjct: 872 EKGDPGLPGEPGLQG--RPGELGPQ 894
Score = 31.6 bits (70), Expect = 0.38
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 10 GSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHG 66
G G+ G G+P GP G+ G G GA G +G +G GP G +G G
Sbjct: 481 GEKGEMGVAGPMGLP-GPKGDIGAIGPVGAPGPKGEKGDVGI---GPFGQGEKGEKG 533
Score = 31.6 bits (70), Expect = 0.38
Identities = 24/70 (34%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 5 GRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGP 64
G+G G G PG P G G+ G GE G G G G R G P P
Sbjct: 525 GQGEKGEKGSLGLPG----PPGRDGSKGMRGEPGELGEPGLPGEVGMRGPQGPPGLPGPP 580
Query: 65 HGGAASGLNG 74
A GL G
Sbjct: 581 GRVGAPGLQG 590
Score = 30.0 bits (66), Expect = 1.1
Identities = 24/69 (34%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 18 PGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHGGAASGLNGCCR 77
P G G G G PG G G GP GA G G GP G G G
Sbjct: 479 PAGEKGEMGVAGPMGLPGPKGDIGAIGP--VGAPGPKGEKGDVGIGPFGQGEKGEKG--S 534
Query: 78 CGARGPESR 86
G GP R
Sbjct: 535 LGLPGPPGR 543
Score = 30.0 bits (66), Expect = 1.1
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 12/66 (18%)
Query: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAA-----RASGPGGGA 60
+G G GD PG PG+ G G G G GP G G + PG
Sbjct: 692 QGLRGKKGDMGPPGIPGL-------LGLQGPPGPPGVPGPPGPGGSPGLPGEIGFPGKPG 744
Query: 61 PRGPHG 66
P GP G
Sbjct: 745 PPGPTG 750
Score = 30.0 bits (66), Expect = 1.1
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 17/56 (30%)
Query: 6 RGTGGSTGDADGPGGPGIP-----------------DGPGGNAGGPGEAGATGGRG 44
+G G G PG PGIP +GP G G PG+ G G RG
Sbjct: 1401 KGDKGPPGGKGQPGDPGIPGHKGHTGLMGPQGLPGENGPVGPPGPPGQPGFPGLRG 1456
Score = 29.6 bits (65), Expect = 1.5
Identities = 20/58 (34%), Positives = 22/58 (37%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGPHGGAASGLNG 74
GP G P+GP G G GE G G G G R G P +GL G
Sbjct: 750 GPPGKDGPNGPPGPPGTKGEPGERGEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPG 807
Score = 29.6 bits (65), Expect = 1.5
Identities = 26/91 (28%), Positives = 33/91 (36%), Gaps = 31/91 (34%)
Query: 7 GTGGSTGDADGPGGPGI--------------------PDGPGG---------NAGGPGEA 37
G G+ G+ PG PG+ P GP G + G PG+
Sbjct: 1081 GAPGNPGERGPPGKPGLSSLLSPGDINLLAKDVCNDCPPGPPGLPGLPGFKGDKGVPGKP 1140
Query: 38 GATGGRGPRG-AGAARASGPGG-GAPRGPHG 66
G G G +G AG GP G P+G G
Sbjct: 1141 GREGTEGKKGEAGPPGLPGPPGIAGPQGSQG 1171
Score = 28.5 bits (62), Expect = 3.3
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 19/88 (21%)
Query: 7 GTGGSTGD--ADGPGGPGIPDGPGGNAG----GPGEAGATGGRGPRGAGAARASGPGGGA 60
G G GD A GP G P G G+ G G GE G G G G PG
Sbjct: 493 GLPGPKGDIGAIGPVGAPGPKGEKGDVGIGPFGQGEKGEKGSLGLPGP-------PGRDG 545
Query: 61 PRGPHGGAAS----GLNGCCRCGARGPE 84
+G G GL G G RGP+
Sbjct: 546 SKGMRGEPGELGEPGLPG--EVGMRGPQ 571
Score = 27.3 bits (59), Expect = 7.3
Identities = 23/73 (31%), Positives = 26/73 (35%), Gaps = 18/73 (24%)
Query: 3 AEGRGTGGSTGDADGPGGPGIPD----------------GPGGNAGGPGEAGATGGRGPR 46
A G G G G PG PG P GP G+ G PG G G P
Sbjct: 1549 APGVGLRGEMGPPGIPGQPGEPGYAKDGLPGIPGPQGETGPAGHPGLPGPPGPPGQCDPS 1608
Query: 47 GAG--AARASGPG 57
A+ A+ PG
Sbjct: 1609 QCAYFASLAARPG 1621
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.139 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,332,066
Number of Sequences: 37866
Number of extensions: 705452
Number of successful extensions: 30746
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 767
Number of HSP's that attempted gapping in prelim test: 6233
Number of HSP's gapped (non-prelim): 9944
length of query: 180
length of database: 18,247,518
effective HSP length: 96
effective length of query: 84
effective length of database: 14,612,382
effective search space: 1227440088
effective search space used: 1227440088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.