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Search of human proteins with 37704382
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|37704382 defensin, beta 119 isoform a precursor [Homo
sapiens]
(84 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|37704382 defensin, beta 119 isoform a precursor [Homo sapiens] 182 5e-47
gi|23503329 defensin, beta 119 isoform c precursor [Homo sapiens] 59 1e-09
gi|23503331 defensin, beta 123 precursor [Homo sapiens] 46 7e-06
gi|58865339 defensin, beta 121 [Homo sapiens] 45 9e-06
gi|16905373 beta-defensin 118 [Homo sapiens] 43 5e-05
gi|37704384 defensin, beta 119 isoform b [Homo sapiens] 41 2e-04
gi|21040279 defensin, beta 127 preproprotein [Homo sapiens] 38 0.002
gi|83582800 beta-defensin 116 [Homo sapiens] 37 0.003
gi|13624333 defensin, beta 126 preproprotein [Homo sapiens] 37 0.003
gi|82734223 beta-defensin 124 [Homo sapiens] 36 0.006
gi|83582798 beta-defensin 115 [Homo sapiens] 33 0.037
gi|116517226 beta-defensin 135 [Homo sapiens] 32 0.083
gi|83582802 beta-defensin 128 [Homo sapiens] 32 0.11
gi|76563936 defensin, beta 125 preproprotein [Homo sapiens] 32 0.14
gi|74136827 beta-defensin 134 [Homo sapiens] 31 0.18
gi|46409558 beta-defensin 32 precursor [Homo sapiens] 31 0.24
gi|239757478 PREDICTED: defensin, beta 117 [Homo sapiens] 30 0.32
gi|239751980 PREDICTED: defensin, beta 117 [Homo sapiens] 30 0.32
gi|239746467 PREDICTED: defensin, beta 117 [Homo sapiens] 30 0.32
gi|103485139 defensin, beta 104A precursor [Homo sapiens] 30 0.41
gi|103485137 defensin, beta 104B precursor [Homo sapiens] 30 0.41
gi|22748617 defensin, beta 105A precursor [Homo sapiens] 29 0.70
gi|150036262 chloride channel accessory 4 [Homo sapiens] 29 0.70
gi|71979925 COX19 cytochrome c oxidase assembly homolog [Homo sa... 29 0.70
gi|103485141 defensin, beta 105B precursor [Homo sapiens] 29 0.70
gi|22748611 defensin, beta 106A precursor [Homo sapiens] 29 0.92
gi|82734214 beta-defensin 111 [Homo sapiens] 29 0.92
gi|103485143 defensin, beta 106B precursor [Homo sapiens] 29 0.92
gi|50344744 beta-defensin 108B [Homo sapiens] 28 1.2
gi|83582796 beta-defensin 113 [Homo sapiens] 28 1.6
>gi|37704382 defensin, beta 119 isoform a precursor [Homo sapiens]
Length = 84
Score = 182 bits (462), Expect = 5e-47
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MKLLYLFLAILLAIEEPVISGKRHILRCMGNSGICRASCKKNEQPYLYCRNCQSCCLQSY 60
MKLLYLFLAILLAIEEPVISGKRHILRCMGNSGICRASCKKNEQPYLYCRNCQSCCLQSY
Sbjct: 1 MKLLYLFLAILLAIEEPVISGKRHILRCMGNSGICRASCKKNEQPYLYCRNCQSCCLQSY 60
Query: 61 MRISISGKEENTDWSYEKQWPRLP 84
MRISISGKEENTDWSYEKQWPRLP
Sbjct: 61 MRISISGKEENTDWSYEKQWPRLP 84
>gi|23503329 defensin, beta 119 isoform c precursor [Homo sapiens]
Length = 88
Score = 58.5 bits (140), Expect = 1e-09
Identities = 33/59 (55%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
Query: 1 MKLLYLFLAILLAIEEPVISGKRHILRCMGNSGICRASCKKNEQPYLYCRNCQSCCLQS 59
MKLLYLFLAILLAIEEPVIS + C G CR CK E + CRN + CC+ S
Sbjct: 1 MKLLYLFLAILLAIEEPVIS-----VECW-MDGHCRLLCKDGEDSIIRCRNRKRCCVPS 53
>gi|23503331 defensin, beta 123 precursor [Homo sapiens]
Length = 67
Score = 45.8 bits (107), Expect = 7e-06
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 1 MKLLYLFLAILLAIEEPVISGKRHILRCMGNSGICRASCKKNEQPYLYCRNCQSCCLQ 58
MKLL L L +LL + + G + RC G CR C K E+ Y+YC N + CC++
Sbjct: 1 MKLLLLTLTVLLLLSQLTPGGTQ---RCWNLYGKCRYRCSKKERVYVYCINNKMCCVK 55
>gi|58865339 defensin, beta 121 [Homo sapiens]
Length = 76
Score = 45.4 bits (106), Expect = 9e-06
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 1 MKLLYLFLAILLAIEEPVISGKRHILRCMGNSGICRASCKKNEQPYLYCRNCQSCCLQ-S 59
MKLL L L + L + + +++C G SG CR +CK++E Y+ C+ CC+
Sbjct: 1 MKLLLLLLTVTLLLAQVT-----PVMKCWGKSGRCRTTCKESEVYYILCKTEAKCCVDPK 55
Query: 60 YMRISISGKEENT 72
Y+ + + NT
Sbjct: 56 YVPVKPKLTDTNT 68
>gi|16905373 beta-defensin 118 [Homo sapiens]
Length = 123
Score = 43.1 bits (100), Expect = 5e-05
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 1 MKLLYLFLAILLAIEE--PVISGKRHILRCMGNSGICRASCKKNEQPYLYCRNCQSCCLQ 58
MKLL L L +L+ + + P SG++ +C SG CR CK E C+N ++CC+
Sbjct: 1 MKLLLLALPMLVLLPQVIPAYSGEK---KCWNRSGHCRKQCKDGEAVKDTCKNLRACCIP 57
Query: 59 S 59
S
Sbjct: 58 S 58
>gi|37704384 defensin, beta 119 isoform b [Homo sapiens]
Length = 43
Score = 40.8 bits (94), Expect = 2e-04
Identities = 21/28 (75%), Positives = 22/28 (78%)
Query: 1 MKLLYLFLAILLAIEEPVISGKRHILRC 28
MKLLYLFLAILLAIEEPVIS + C
Sbjct: 1 MKLLYLFLAILLAIEEPVISALVRTVGC 28
>gi|21040279 defensin, beta 127 preproprotein [Homo sapiens]
Length = 99
Score = 38.1 bits (87), Expect = 0.002
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 4 LYLFLAILLAIEEPVISGKRHILRCMGN--SGICRASCKKNEQPYLYCRNCQSCCL 57
L++ +AILL ++P ++ + +C N G CR C+ NE P C N + CCL
Sbjct: 3 LFMIIAILL-FQKPTVT--EQLKKCWNNYVQGHCRKICRVNEVPEALCENGRYCCL 55
>gi|83582800 beta-defensin 116 [Homo sapiens]
Length = 102
Score = 37.4 bits (85), Expect = 0.003
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 28 CMGNSGICRASCKKNEQPYLYCRNCQSCCLQSYMRISIS 66
C G+CR +C++ E YL C N Q CCL+ ++I+ S
Sbjct: 40 CELYQGMCRNACREYEIQYLTCPNDQKCCLKLSVKITSS 78
>gi|13624333 defensin, beta 126 preproprotein [Homo sapiens]
Length = 111
Score = 37.0 bits (84), Expect = 0.003
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 1 MKLLYLFLAILLAIEEPVISGKRHILRCMGNSGICRASCKKNE----QPYLYCRNCQSCC 56
MK L LA+ + + + ++SG ++ +C+ + GIC+ CK E + C + CC
Sbjct: 1 MKSLLFTLAVFMLLAQ-LVSGNWYVKKCLNDVGICKKKCKPEEMHVKNGWAMCGKQRDCC 59
Query: 57 LQSYMR 62
+ + R
Sbjct: 60 VPADRR 65
>gi|82734223 beta-defensin 124 [Homo sapiens]
Length = 71
Score = 36.2 bits (82), Expect = 0.006
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 1 MKLLYLFLAILLAIEEPVISGKRHILRCMGNSGICRASCKKNEQPYLYCRNCQSCCL 57
M L LFL LL + V SG+ RC G C+ C + E C + CCL
Sbjct: 1 MTQLLLFLVALLVLGH-VPSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCCL 56
>gi|83582798 beta-defensin 115 [Homo sapiens]
Length = 88
Score = 33.5 bits (75), Expect = 0.037
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 1 MKLLYLFLAILLAIEEPVISGKRHILRCMGNSGICRASCKKNEQPYLYCRNCQSCCL 57
+KL L L +L+ + + G I RC +G CR SCK+ E+ C CC+
Sbjct: 13 IKLSVLALVVLVVLAQTAPDG--WIRRCYYGTGRCRKSCKEIERKKEKCGEKHICCV 67
>gi|116517226 beta-defensin 135 [Homo sapiens]
Length = 77
Score = 32.3 bits (72), Expect = 0.083
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 3 LLYLFLAILLAIEEPVISGKRHILR-----CMGNSGICRASCKKNEQPYLYCRNCQSCCL 57
LL L + LL P SG ++ C G CR C KNEQ + C CC+
Sbjct: 7 LLALVVLNLLFYVPPGRSGPNVYIQKIFASCWRLQGTCRPKCLKNEQYRILCDTIHLCCV 66
Query: 58 QSYMRISISGK 68
++GK
Sbjct: 67 NPKYLPILTGK 77
>gi|83582802 beta-defensin 128 [Homo sapiens]
Length = 93
Score = 32.0 bits (71), Expect = 0.11
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 6 LFLAILLAIEEPVISGKRHILRCMGN-SGICRASCKKNEQPYLYCRNCQSCC 56
LFL +++ + E + G R + +C +G CR CK E+ + C + + CC
Sbjct: 3 LFLVLIILLFEVLTDGAR-LKKCFNKVTGYCRKKCKVGERYEIGCLSGKLCC 53
>gi|76563936 defensin, beta 125 preproprotein [Homo sapiens]
Length = 156
Score = 31.6 bits (70), Expect = 0.14
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 10 ILLAIEEPVISGKRHILRCMGNS-GICRASCKKNEQPYLYCRNCQSCCL 57
I+ + V G +C N+ G CR C E+ L CRN SCC+
Sbjct: 9 IICGLLTRVTKGSFEPQKCWKNNVGHCRRRCLDTERYILLCRNKLSCCI 57
>gi|74136827 beta-defensin 134 [Homo sapiens]
Length = 66
Score = 31.2 bits (69), Expect = 0.18
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 6 LFLAILLAIEEPVISGKRHIL-----RCMGNSGICRASCKKNEQPYLYCRNCQSCCLQ 58
L + + L + +PV++G + +C N GICR C ++E YC CC++
Sbjct: 5 LVVFVFLFLWDPVLAGINSLSSEMHKKCYKN-GICRLECYESEMLVAYCMFQLECCVK 61
>gi|46409558 beta-defensin 32 precursor [Homo sapiens]
Length = 95
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 1 MKLLYLFLAILLAIEEPVISGKRHILRCMGNS-GICRASCKKNEQPYLYCRNCQSCCL 57
MK L L LA L + + VI +C+ N+ G CR C E C + CC+
Sbjct: 1 MKFLLLVLAALGFLTQ-VIPASAGGSKCVSNTPGYCRTCCHWGETALFMCNASRKCCI 57
>gi|239757478 PREDICTED: defensin, beta 117 [Homo sapiens]
Length = 53
Score = 30.4 bits (67), Expect = 0.32
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 28 CMGNSGICRASCKKNEQPYLYCRNCQSCCLQS 59
C G CR +CK EQ C+N CC+ S
Sbjct: 18 CWIIKGHCRKNCKPGEQVKKPCKNGDYCCIPS 49
>gi|239751980 PREDICTED: defensin, beta 117 [Homo sapiens]
Length = 53
Score = 30.4 bits (67), Expect = 0.32
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 28 CMGNSGICRASCKKNEQPYLYCRNCQSCCLQS 59
C G CR +CK EQ C+N CC+ S
Sbjct: 18 CWIIKGHCRKNCKPGEQVKKPCKNGDYCCIPS 49
>gi|239746467 PREDICTED: defensin, beta 117 [Homo sapiens]
Length = 53
Score = 30.4 bits (67), Expect = 0.32
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 28 CMGNSGICRASCKKNEQPYLYCRNCQSCCLQS 59
C G CR +CK EQ C+N CC+ S
Sbjct: 18 CWIIKGHCRKNCKPGEQVKKPCKNGDYCCIPS 49
>gi|103485139 defensin, beta 104A precursor [Homo sapiens]
Length = 72
Score = 30.0 bits (66), Expect = 0.41
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 3 LLYLFLAILLAIEEPVISGKRHILRCMGNSGICRASCKKNEQPYLYCRNCQSCCLQSY 60
+L L +++LL + PV S C + CR C+ E C N +CCL+ +
Sbjct: 5 VLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRKW 62
>gi|103485137 defensin, beta 104B precursor [Homo sapiens]
Length = 72
Score = 30.0 bits (66), Expect = 0.41
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 3 LLYLFLAILLAIEEPVISGKRHILRCMGNSGICRASCKKNEQPYLYCRNCQSCCLQSY 60
+L L +++LL + PV S C + CR C+ E C N +CCL+ +
Sbjct: 5 VLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRKW 62
>gi|22748617 defensin, beta 105A precursor [Homo sapiens]
Length = 78
Score = 29.3 bits (64), Expect = 0.70
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 12 LAIEEPVISGKRHILR-CMGNSGICRASCKKNEQPYLYCRNCQSCCLQ 58
L +P SG+ + C G CR C +NE+P CR CC Q
Sbjct: 29 LDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDGNCRLNFLCCRQ 76
>gi|150036262 chloride channel accessory 4 [Homo sapiens]
Length = 919
Score = 29.3 bits (64), Expect = 0.70
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 19 ISGKRHILRCMGNSGICRASCKKNEQPYLYCRNCQ 53
ISG+ + +C G S + RA C+ + LY ++CQ
Sbjct: 191 ISGRNRVYKCQGGSCLSRA-CRIDSTTKLYGKDCQ 224
>gi|71979925 COX19 cytochrome c oxidase assembly homolog [Homo
sapiens]
Length = 90
Score = 29.3 bits (64), Expect = 0.70
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 20 SGKRHILRCMGNSGICRASCKKNEQPYLYCRNCQSCCLQ 58
S K ++C+ N+ A C+K + YL CR + LQ
Sbjct: 32 SFKEKFMKCLHNNNFENALCRKESKEYLECRMERKLMLQ 70
>gi|103485141 defensin, beta 105B precursor [Homo sapiens]
Length = 78
Score = 29.3 bits (64), Expect = 0.70
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 12 LAIEEPVISGKRHILR-CMGNSGICRASCKKNEQPYLYCRNCQSCCLQ 58
L +P SG+ + C G CR C +NE+P CR CC Q
Sbjct: 29 LDFSQPFPSGEFAVCESCKLGRGKCRKECLENEKPDGNCRLNFLCCRQ 76
>gi|22748611 defensin, beta 106A precursor [Homo sapiens]
Length = 65
Score = 28.9 bits (63), Expect = 0.92
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 27 RCMGNSGICRASCKKNEQPYLYCRNCQSCC 56
+C G C+ +C KNE+ C+ CC
Sbjct: 25 KCNKLKGTCKNNCGKNEELIALCQKSLKCC 54
>gi|82734214 beta-defensin 111 [Homo sapiens]
Length = 67
Score = 28.9 bits (63), Expect = 0.92
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 3 LLYLFLAILLAIEEPVISGKRHILR-CMGNSGICRASCKKNEQPYLYC-RNCQSCCLQ 58
+L+ ++ IL A ++ G + R C +G C+ C +NE YC R CCLQ
Sbjct: 9 ILHFWVTILPAKKKYPEYGSLDLRRECRIGNGQCKNQCHENEIRIAYCIRPGTHCCLQ 66
>gi|103485143 defensin, beta 106B precursor [Homo sapiens]
Length = 65
Score = 28.9 bits (63), Expect = 0.92
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 27 RCMGNSGICRASCKKNEQPYLYCRNCQSCC 56
+C G C+ +C KNE+ C+ CC
Sbjct: 25 KCNKLKGTCKNNCGKNEELIALCQKSLKCC 54
>gi|50344744 beta-defensin 108B [Homo sapiens]
Length = 73
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 1 MKLLYLFLAILLAIEEPVISGKRHILRCMGNSGICRASCKKNEQPYLYCRNCQSCCL 57
M++ L AI + + + + + C +G CR C + E C N Q CCL
Sbjct: 1 MRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCL 57
>gi|83582796 beta-defensin 113 [Homo sapiens]
Length = 82
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 1 MKLLYLFLAILLAIE-EPVISGKR------HILRCMGNSGICRASCKKNEQPYLYCRNCQ 53
MK+L +FL + + P + K+ C G C+ C E Y YC N
Sbjct: 1 MKILCIFLTFVFTVSCGPSVPQKKTREVAERKRECQLVRGACKPECNSWEYVYYYC-NVN 59
Query: 54 SCC 56
CC
Sbjct: 60 PCC 62
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.138 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,503,072
Number of Sequences: 37866
Number of extensions: 143102
Number of successful extensions: 437
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 407
Number of HSP's gapped (non-prelim): 41
length of query: 84
length of database: 18,247,518
effective HSP length: 56
effective length of query: 28
effective length of database: 16,127,022
effective search space: 451556616
effective search space used: 451556616
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.