Guide to the Human Genome
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Name: DEFB121 Sequence: fasta or formatted (76aa) NCBI GI: 58865339
Description:

defensin, beta 121

Referenced in:

Additional Host Defense Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9          3           1
 C cysteine            7.9          6           2
 D aspartate           2.6          2           1
 E glutamate           5.3          4           1
 F phenylalanine       0.0          0           0
 G glycine             2.6          2           1
 H histidine           0.0          0           0
 I isoleucine          1.3          1           1
 K lysine             11.8          9           1
 L leucine            15.8         12           6
 M methionine          2.6          2           1
 N asparagine          1.3          1           1
 P proline             5.3          4           1
 Q glutamine           1.3          1           1
 R arginine            2.6          2           1
 S serine              6.6          5           1
 T threonine          13.2         10           2
 V valine             10.5          8           1
 W tryptophan          1.3          1           1
 Y tyrosine            3.9          3           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   defensin, beta 121 
DEFB123               0.316   defensin, beta 123 precursor 
DEFB118               0.218   beta-defensin 118 
DEFB119               0.203   defensin, beta 119 isoform c precursor 
DEFB135               0.188   beta-defensin 135 
DEFB119               0.150   defensin, beta 119 isoform a precursor 
DEFB132               0.143   beta-defensin 32 precursor 
DEFB125               0.135   defensin, beta 125 preproprotein 
DEFB115               0.128   beta-defensin 115 
DEFB124               0.113   beta-defensin 124 
DEFB116               0.113   beta-defensin 116 
DEFB126               0.098   defensin, beta 126 preproprotein 
DEFB127               0.090   defensin, beta 127 preproprotein 
LOC100133128          0.075   PREDICTED: hypothetical protein 
DEFB108B              0.075   beta-defensin 108B 
DEFB128               0.075   beta-defensin 128 
DEFB129               0.075   beta defensin 129 precursor 
DEFB104A              0.068   defensin, beta 104A precursor 
DEFB104B              0.068   defensin, beta 104B precursor 
LOC100133128          0.060   PREDICTED: hypothetical protein 
LOC100133128          0.060   PREDICTED: hypothetical protein 
DEFB134               0.060   beta-defensin 134 
DEFB106A              0.045   defensin, beta 106A precursor 
DEFB106B              0.045   defensin, beta 106B precursor 
DEFB117               0.045   PREDICTED: defensin, beta 117 
DEFB117               0.045   PREDICTED: defensin, beta 117 
DEFB117               0.045   PREDICTED: defensin, beta 117 
LOC100287535          0.038   PREDICTED: hypothetical protein XP_002343194 
DEFB114               0.038   beta-defensin 114 
PRL                   0.030   prolactin precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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