Guide to the Human Genome
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Name: DEFB126 Sequence: fasta or formatted (111aa) NCBI GI: 13624333
Description:

defensin, beta 126 preproprotein

Referenced in:

Additional Host Defense Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1          9           1
 C cysteine            6.3          7           2
 D aspartate           2.7          3           1
 E glutamate           1.8          2           2
 F phenylalanine       2.7          3           1
 G glycine             4.5          5           1
 H histidine           0.9          1           1
 I isoleucine          1.8          2           1
 K lysine              9.0         10           3
 L leucine             7.2          8           2
 M methionine          7.2          8           2
 N asparagine          3.6          4           1
 P proline             5.4          6           1
 Q glutamine           2.7          3           1
 R arginine            3.6          4           2
 S serine              6.3          7           2
 T threonine          13.5         15           3
 V valine              9.0         10           1
 W tryptophan          1.8          2           1
 Y tyrosine            1.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   defensin, beta 126 preproprotein 
DEFB118               0.091   beta-defensin 118 
DEFB125               0.082   defensin, beta 125 preproprotein 
DEFB115               0.082   beta-defensin 115 
DEFB121               0.062   defensin, beta 121 
DEFB119               0.058   defensin, beta 119 isoform a precursor 
LOC730474             0.034   PREDICTED: hypothetical protein 
DEFB128               0.034   beta-defensin 128 
LOC100294470          0.029   PREDICTED: hypothetical protein, partial 
DEFB124               0.024   beta-defensin 124 
MGA                   0.024   MAX gene associated 
LOC730474             0.024   PREDICTED: hypothetical protein, partial 
FNDC1                 0.024   fibronectin type III domain containing 1 
DEFB116               0.024   beta-defensin 116 
MUC17                 0.019   mucin 17 
LOC732156             0.019   PREDICTED: similar to Mucin-3A 
ANK3                  0.014   ankyrin 3 isoform 1 
DEFB129               0.014   beta defensin 129 precursor 
MUC5AC                0.014   mucin 5AC 
LOC100294420          0.014   PREDICTED: similar to mucin 2 
MUC3A                 0.014   PREDICTED: mucin 3A, intestinal 
CHIC2                 0.014   cysteine-rich hydrophobic domain 2 
MUC5B                 0.014   mucin 5, subtype B, tracheobronchial 
LOC100131514          0.014   PREDICTED: similar to hCG1747327, partial 
DEFB117               0.014   PREDICTED: defensin, beta 117 
DEFB117               0.014   PREDICTED: defensin, beta 117 
LOC100131251          0.014   PREDICTED: hypothetical protein 
LOC100131514          0.014   PREDICTED: similar to intestinal mucin MUC3B 
DEFB117               0.014   PREDICTED: defensin, beta 117 
LOC100131251          0.014   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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