Guide to the Human Genome
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Name: DEFB119 Sequence: fasta or formatted (88aa) NCBI GI: 23503329
Description:

defensin, beta 119 isoform c precursor

Referenced in:

Additional Host Defense Functions

Other entries for this name:
alt prot [84aa] defensin, beta 119 isoform a precursor
alt prot [43aa] defensin, beta 119 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.4          3           1
 C cysteine            6.8          6           2
 D aspartate           3.4          3           1
 E glutamate           4.5          4           2
 F phenylalanine       1.1          1           1
 G glycine             4.5          4           1
 H histidine           2.3          2           1
 I isoleucine         10.2          9           2
 K lysine              5.7          5           1
 L leucine            11.4         10           2
 M methionine          4.5          4           1
 N asparagine          3.4          3           1
 P proline             5.7          5           1
 Q glutamine           2.3          2           1
 R arginine            8.0          7           1
 S serine              4.5          4           1
 T threonine           9.1          8           2
 V valine              4.5          4           1
 W tryptophan          2.3          2           1
 Y tyrosine            2.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   defensin, beta 119 isoform c precursor 
DEFB119               0.209   defensin, beta 119 isoform a precursor 
DEFB121               0.166   defensin, beta 121 
DEFB118               0.147   beta-defensin 118 
DEFB123               0.104   defensin, beta 123 precursor 
DEFB119               0.092   defensin, beta 119 isoform b 
DEFB117               0.086   PREDICTED: defensin, beta 117 
DEFB117               0.086   PREDICTED: defensin, beta 117 
DEFB117               0.086   PREDICTED: defensin, beta 117 
DEFB125               0.086   defensin, beta 125 preproprotein 
DEFB127               0.074   defensin, beta 127 preproprotein 
DEFB132               0.043   beta-defensin 32 precursor 
DEFB135               0.037   beta-defensin 135 
LOC100133128          0.031   PREDICTED: hypothetical protein 
LOC100133128          0.031   PREDICTED: hypothetical protein 
LOC100133128          0.031   PREDICTED: hypothetical protein 
DEFB128               0.031   beta-defensin 128 
LOC100287535          0.031   PREDICTED: hypothetical protein XP_002343194 
DEFB108B              0.031   beta-defensin 108B 
DEFB134               0.031   beta-defensin 134 
LOC100286963          0.025   PREDICTED: hypothetical protein XP_002342858 
DEFB115               0.025   beta-defensin 115 
LOC100290235          0.018   PREDICTED: hypothetical protein XP_002347009 
LOC100287106          0.018   PREDICTED: hypothetical protein XP_002342470 
DEFB104A              0.012   defensin, beta 104A precursor 
DEFB116               0.012   beta-defensin 116 
DEFB104B              0.012   defensin, beta 104B precursor 
DEFB129               0.012   beta defensin 129 precursor 
LOC100128174          0.012   PREDICTED: similar to defensin, beta 131 
LOC100129216          0.006   PREDICTED: similar to defensin, beta 131 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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