Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: DEFB108B Sequence: fasta or formatted (73aa) NCBI GI: 50344744
Description:

beta-defensin 108B

Referenced in:

Additional Host Defense Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1          3           1
 C cysteine            8.2          6           2
 D aspartate           2.7          2           1
 E glutamate           6.8          5           1
 F phenylalanine       8.2          6           3
 G glycine             5.5          4           1
 H histidine           2.7          2           1
 I isoleucine          6.8          5           1
 K lysine              5.5          4           2
 L leucine             9.6          7           2
 M methionine          2.7          2           1
 N asparagine          2.7          2           1
 P proline             8.2          6           1
 Q glutamine           4.1          3           1
 R arginine            8.2          6           1
 S serine              5.5          4           1
 T threonine           4.1          3           2
 V valine              4.1          3           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   beta-defensin 108B 
LOC100133128          0.985   PREDICTED: hypothetical protein 
LOC100133128          0.977   PREDICTED: hypothetical protein 
LOC100133128          0.977   PREDICTED: hypothetical protein 
LOC100290235          0.677   PREDICTED: hypothetical protein XP_002347009 
DEFB104A              0.165   defensin, beta 104A precursor 
DEFB104B              0.165   defensin, beta 104B precursor 
DEFB110               0.113   beta-defensin 110 
DEFB106A              0.105   defensin, beta 106A precursor 
DEFB116               0.105   beta-defensin 116 
DEFB106B              0.105   defensin, beta 106B precursor 
DEFB111               0.105   beta-defensin 111 
DEFB118               0.105   beta-defensin 118 
DEFB132               0.075   beta-defensin 32 precursor 
DEFB125               0.075   defensin, beta 125 preproprotein 
DEFB121               0.075   defensin, beta 121 
DEFB124               0.068   beta-defensin 124 
DEFB123               0.068   defensin, beta 123 precursor 
LOC100287535          0.053   PREDICTED: hypothetical protein XP_002343194 
DEFB105A              0.053   defensin, beta 105A precursor 
DEFB105B              0.053   defensin, beta 105B precursor 
DEFB103A              0.045   defensin, beta 103A precursor 
DEFB107B              0.045   defensin, beta 107B precursor 
DEFB107A              0.045   defensin, beta 107A precursor 
DEFB103B              0.045   beta-defensin 103B precursor 
DEFB133               0.038   PREDICTED: defensin, beta 133 
DEFB133               0.038   PREDICTED: defensin, beta 133 
LOC100286963          0.038   PREDICTED: hypothetical protein XP_002342858 
DEFB133               0.038   PREDICTED: beta-defensin 133 
DEFB119               0.038   defensin, beta 119 isoform c precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press