Guide to the Human Genome
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Name: DEFB117 Sequence: fasta or formatted (53aa) NCBI GI: 239751980
Description:

PREDICTED: defensin, beta 117

Referenced in:

Additional Host Defense Functions

Other entries for this name:
alt mRNA [53aa] PREDICTED: defensin, beta 117
alt mRNA [53aa] PREDICTED: defensin, beta 117
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.0          0           0
 C cysteine           15.1          8           2
 D aspartate           5.7          3           1
 E glutamate           1.9          1           1
 F phenylalanine       0.0          0           0
 G glycine             5.7          3           1
 H histidine           1.9          1           1
 I isoleucine          7.5          4           2
 K lysine             15.1          8           2
 L leucine             1.9          1           1
 M methionine          1.9          1           1
 N asparagine          5.7          3           1
 P proline             7.5          4           1
 Q glutamine           3.8          2           1
 R arginine            3.8          2           1
 S serine             11.3          6           2
 T threonine           3.8          2           1
 V valine              3.8          2           1
 W tryptophan          1.9          1           1
 Y tyrosine            1.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: defensin, beta 117 
DEFB117               1.000   PREDICTED: defensin, beta 117 
DEFB117               1.000   PREDICTED: defensin, beta 117 
DEFB118               0.343   beta-defensin 118 
DEFB127               0.192   defensin, beta 127 preproprotein 
DEFB119               0.141   defensin, beta 119 isoform c precursor 
DEFB115               0.131   beta-defensin 115 
DEFB128               0.101   beta-defensin 128 
DEFB135               0.081   beta-defensin 135 
DEFB123               0.081   defensin, beta 123 precursor 
DEFB121               0.061   defensin, beta 121 
DEFB125               0.051   defensin, beta 125 preproprotein 
DEFB119               0.051   defensin, beta 119 isoform a precursor 
NELL1                 0.051   nel-like 1 isoform 2 precursor 
NELL1                 0.051   nel-like 1 isoform 1 precursor 
EFEMP1                0.040   EGF-containing fibulin-like extracellular matrix pro...
EFEMP1                0.040   EGF-containing fibulin-like extracellular matrix pro...
EFEMP1                0.040   EGF-containing fibulin-like extracellular matrix prot...
KRTAP10-4             0.040   keratin associated protein 10-4 
KRTAP10-12            0.040   keratin associated protein 10-12 
KRTAP10-7             0.040   keratin associated protein 10-7 
NOTCH1                0.030   notch1 preproprotein 
DEFB105A              0.030   defensin, beta 105A precursor 
DEFB105B              0.030   defensin, beta 105B precursor 
LOC100293245          0.030   PREDICTED: similar to beta-defensin 130 
LOC100290863          0.030   PREDICTED: hypothetical protein XP_002346650 
LOC100288554          0.030   PREDICTED: hypothetical protein XP_002342487 
CD97                  0.030   CD97 antigen isoform 1 precursor 
SCARF2                0.030   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.030   scavenger receptor class F, member 2 isoform 2 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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