Guide to the Human Genome
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Name: DEFB134 Sequence: fasta or formatted (66aa) NCBI GI: 74136827
Description:

beta-defensin 134

Referenced in:

Additional Host Defense Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5          3           1
 C cysteine            9.1          6           2
 D aspartate           1.5          1           1
 E glutamate           7.6          5           1
 F phenylalanine       6.1          4           1
 G glycine             4.5          3           1
 H histidine           1.5          1           1
 I isoleucine          3.0          2           1
 K lysine              7.6          5           2
 L leucine            13.6          9           2
 M methionine          6.1          4           1
 N asparagine          4.5          3           1
 P proline             6.1          4           1
 Q glutamine           1.5          1           1
 R arginine            1.5          1           1
 S serine              6.1          4           2
 T threonine           0.0          0           0
 V valine              9.1          6           2
 W tryptophan          1.5          1           1
 Y tyrosine            4.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   beta-defensin 134 
DEFB106A              0.084   defensin, beta 106A precursor 
DEFB125               0.084   defensin, beta 125 preproprotein 
DEFB106B              0.084   defensin, beta 106B precursor 
DEFB121               0.067   defensin, beta 121 
DEFB111               0.059   beta-defensin 111 
DEFB123               0.059   defensin, beta 123 precursor 
DEFB119               0.050   defensin, beta 119 isoform a precursor 
DEFB118               0.050   beta-defensin 118 
DEFB135               0.042   beta-defensin 135 
LOC100287066          0.042   PREDICTED: hypothetical protein XP_002342880 
DEFB119               0.042   defensin, beta 119 isoform c precursor 
LOC100133128          0.034   PREDICTED: hypothetical protein 
DEFB108B              0.034   beta-defensin 108B 
DEFB133               0.025   PREDICTED: defensin, beta 133 
DEFB133               0.025   PREDICTED: defensin, beta 133 
DEFB133               0.025   PREDICTED: beta-defensin 133 
DEFB116               0.025   beta-defensin 116 
LOC100133128          0.025   PREDICTED: hypothetical protein 
LOC100133128          0.025   PREDICTED: hypothetical protein 
RICTOR                0.017   rapamycin-insensitive companion of mTOR 
MFSD5                 0.017   major facilitator superfamily domain containing 5 [H...
LOC100128174          0.017   PREDICTED: hypothetical protein 
LOC100128174          0.017   PREDICTED: similar to defensin, beta 131 
LOC100290235          0.008   PREDICTED: hypothetical protein XP_002347009 
LOC100128174          0.008   PREDICTED: similar to defensin, beta 131 
PTF1A                 0.008   pancreas specific transcription factor, 1a 
DEFB132               0.008   beta-defensin 32 precursor 
DEFB127               0.008   defensin, beta 127 preproprotein 
KRTAP13-4             0.008   keratin associated protein 13-4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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