Guide to the Human Genome
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Name: DEFB127 Sequence: fasta or formatted (99aa) NCBI GI: 21040279
Description:

defensin, beta 127 preproprotein

Referenced in:

Additional Host Defense Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1          5           1
 C cysteine            7.1          7           2
 D aspartate           1.0          1           1
 E glutamate           7.1          7           1
 F phenylalanine       3.0          3           1
 G glycine             3.0          3           1
 H histidine           1.0          1           1
 I isoleucine          8.1          8           2
 K lysine             10.1         10           2
 L leucine            11.1         11           2
 M methionine          2.0          2           1
 N asparagine          6.1          6           2
 P proline             7.1          7           2
 Q glutamine           5.1          5           1
 R arginine            4.0          4           1
 S serine              2.0          2           1
 T threonine           8.1          8           1
 V valine              5.1          5           1
 W tryptophan          1.0          1           1
 Y tyrosine            3.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   defensin, beta 127 preproprotein 
DEFB128               0.200   beta-defensin 128 
DEFB117               0.103   PREDICTED: defensin, beta 117 
DEFB117               0.103   PREDICTED: defensin, beta 117 
DEFB117               0.103   PREDICTED: defensin, beta 117 
DEFB118               0.097   beta-defensin 118 
DEFB124               0.081   beta-defensin 124 
DEFB125               0.076   defensin, beta 125 preproprotein 
DEFB119               0.070   defensin, beta 119 isoform a precursor 
DEFB121               0.065   defensin, beta 121 
DEFB119               0.065   defensin, beta 119 isoform c precursor 
DEFB135               0.054   beta-defensin 135 
DEFB123               0.054   defensin, beta 123 precursor 
DEFB116               0.049   beta-defensin 116 
DEFB104A              0.038   defensin, beta 104A precursor 
DEFB104B              0.038   defensin, beta 104B precursor 
DEFB106A              0.032   defensin, beta 106A precursor 
DEFB106B              0.032   defensin, beta 106B precursor 
DEFB132               0.027   beta-defensin 32 precursor 
LOC100133128          0.016   PREDICTED: hypothetical protein 
DEFB105A              0.016   defensin, beta 105A precursor 
DEFB105B              0.016   defensin, beta 105B precursor 
LOC100133128          0.016   PREDICTED: hypothetical protein 
LOC100133128          0.016   PREDICTED: hypothetical protein 
DEFB115               0.016   beta-defensin 115 
DEFB129               0.016   beta defensin 129 precursor 
AFP                   0.016   alpha-fetoprotein precursor 
GRAMD4                0.016   death-inducing-protein 
DEFB108B              0.011   beta-defensin 108B 
WFIKKN1               0.011   WAP, follistatin/kazal, immunoglobulin, kunitz and n...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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