Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: DEFB115 Sequence: fasta or formatted (88aa) NCBI GI: 83582798
Description:

beta-defensin 115

Referenced in:

Additional Host Defense Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.4          3           1
 C cysteine            6.8          6           2
 D aspartate           5.7          5           1
 E glutamate           8.0          7           1
 F phenylalanine       1.1          1           1
 G glycine             5.7          5           1
 H histidine           4.5          4           1
 I isoleucine          6.8          6           1
 K lysine             12.5         11           2
 L leucine            10.2          9           1
 M methionine          1.1          1           1
 N asparagine          0.0          0           0
 P proline             4.5          4           1
 Q glutamine           2.3          2           1
 R arginine            5.7          5           2
 S serine              6.8          6           1
 T threonine           3.4          3           1
 V valine              6.8          6           2
 W tryptophan          1.1          1           1
 Y tyrosine            3.4          3           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   beta-defensin 115 
DEFB118               0.160   beta-defensin 118 
DEFB123               0.117   defensin, beta 123 precursor 
DEFB121               0.104   defensin, beta 121 
DEFB126               0.104   defensin, beta 126 preproprotein 
DEFB104A              0.092   defensin, beta 104A precursor 
DEFB104B              0.092   defensin, beta 104B precursor 
DEFB128               0.092   beta-defensin 128 
DEFB129               0.086   beta defensin 129 precursor 
DEFB117               0.080   PREDICTED: defensin, beta 117 
DEFB117               0.080   PREDICTED: defensin, beta 117 
DEFB117               0.080   PREDICTED: defensin, beta 117 
DEFB116               0.061   beta-defensin 116 
DEFB135               0.055   beta-defensin 135 
DEFB119               0.049   defensin, beta 119 isoform a precursor 
DEFB124               0.049   beta-defensin 124 
DEFB105A              0.049   defensin, beta 105A precursor 
DEFB105B              0.049   defensin, beta 105B precursor 
LOC100133128          0.043   PREDICTED: hypothetical protein 
LOC100133128          0.043   PREDICTED: hypothetical protein 
DEFB114               0.031   beta-defensin 114 
LOC100133128          0.025   PREDICTED: hypothetical protein 
DEFB108B              0.025   beta-defensin 108B 
TSPAN14               0.025   tetraspanin 14 isoform 2 
TSPAN14               0.025   tetraspanin 14 isoform 1 
DEFB119               0.025   defensin, beta 119 isoform c precursor 
DEFB127               0.018   defensin, beta 127 preproprotein 
DEFB125               0.012   defensin, beta 125 preproprotein 
NGFR                  0.006   nerve growth factor receptor precursor 
CD38                  0.006   CD38 antigen 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press