Guide to the Human Genome
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Name: DEFB104B Sequence: fasta or formatted (72aa) NCBI GI: 103485137
Description:

defensin, beta 104B precursor

Referenced in:

Additional Host Defense Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2          3           1
 C cysteine            8.3          6           2
 D aspartate           4.2          3           1
 E glutamate           5.6          4           1
 F phenylalanine       1.4          1           1
 G glycine             4.2          3           1
 H histidine           0.0          0           0
 I isoleucine          4.2          3           1
 K lysine              5.6          4           2
 L leucine            16.7         12           3
 M methionine          1.4          1           1
 N asparagine          2.8          2           1
 P proline             4.2          3           1
 Q glutamine           4.2          3           1
 R arginine           13.9         10           1
 S serine              5.6          4           1
 T threonine           4.2          3           1
 V valine              2.8          2           1
 W tryptophan          1.4          1           1
 Y tyrosine            5.6          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   defensin, beta 104B precursor 
DEFB104A              1.000   defensin, beta 104A precursor 
DEFB108B              0.171   beta-defensin 108B 
LOC100133128          0.171   PREDICTED: hypothetical protein 
LOC100133128          0.163   PREDICTED: hypothetical protein 
LOC100133128          0.163   PREDICTED: hypothetical protein 
DEFB115               0.116   beta-defensin 115 
DEFB118               0.085   beta-defensin 118 
DEFB124               0.078   beta-defensin 124 
DEFB121               0.070   defensin, beta 121 
DEFB111               0.070   beta-defensin 111 
DEFB105A              0.062   defensin, beta 105A precursor 
DEFB105B              0.062   defensin, beta 105B precursor 
DEFB116               0.054   beta-defensin 116 
DEFB127               0.054   defensin, beta 127 preproprotein 
LOC100290235          0.047   PREDICTED: hypothetical protein XP_002347009 
DEFB131               0.039   defensin, beta 131 
DEFB129               0.039   beta defensin 129 precursor 
LOC100128174          0.039   PREDICTED: similar to defensin, beta 131 
DEFB119               0.039   defensin, beta 119 isoform a precursor 
GPAM                  0.023   mitochondrial glycerol 3-phosphate acyltransferase ...
LOC100129216          0.023   PREDICTED: similar to defensin, beta 131 
LOC100128174          0.023   PREDICTED: hypothetical protein 
LOC100129216          0.023   PREDICTED: similar to defensin, beta 131 
LOC100128174          0.023   PREDICTED: similar to defensin, beta 131 
LOC100129216          0.023   PREDICTED: similar to defensin, beta 131 
DEFB128               0.023   beta-defensin 128 
DEFA6                 0.023   defensin, alpha 6 preproprotein 
DEFB112               0.023   beta-defensin 112 
DEFB123               0.023   defensin, beta 123 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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