Guide to the Human Genome
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Name: DEFB118 Sequence: fasta or formatted (123aa) NCBI GI: 16905373
Description:

beta-defensin 118

Referenced in:

Additional Host Defense Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9          6           1
 C cysteine            4.9          6           2
 D aspartate           6.5          8           2
 E glutamate           6.5          8           2
 F phenylalanine       1.6          2           1
 G glycine             4.9          6           1
 H histidine           3.3          4           2
 I isoleucine          4.1          5           2
 K lysine              7.3          9           2
 L leucine             9.8         12           4
 M methionine          2.4          3           1
 N asparagine          3.3          4           1
 P proline             7.3          9           1
 Q glutamine           1.6          2           1
 R arginine            5.7          7           2
 S serine              9.8         12           2
 T threonine           7.3          9           2
 V valine              6.5          8           1
 W tryptophan          0.8          1           1
 Y tyrosine            1.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   beta-defensin 118 
DEFB117               0.147   PREDICTED: defensin, beta 117 
DEFB117               0.147   PREDICTED: defensin, beta 117 
DEFB117               0.147   PREDICTED: defensin, beta 117 
DEFB121               0.125   defensin, beta 121 
DEFB123               0.125   defensin, beta 123 precursor 
DEFB115               0.112   beta-defensin 115 
DEFB132               0.103   beta-defensin 32 precursor 
DEFB128               0.103   beta-defensin 128 
DEFB119               0.103   defensin, beta 119 isoform c precursor 
DEFB125               0.099   defensin, beta 125 preproprotein 
DEFB126               0.082   defensin, beta 126 preproprotein 
DEFB127               0.078   defensin, beta 127 preproprotein 
DEFB119               0.078   defensin, beta 119 isoform a precursor 
LOC100133128          0.065   PREDICTED: hypothetical protein 
DEFB135               0.060   beta-defensin 135 
LOC100133128          0.060   PREDICTED: hypothetical protein 
LOC100133128          0.060   PREDICTED: hypothetical protein 
DEFB108B              0.060   beta-defensin 108B 
DEFB124               0.056   beta-defensin 124 
DEFB104A              0.047   defensin, beta 104A precursor 
DEFB104B              0.047   defensin, beta 104B precursor 
DEFB129               0.039   beta defensin 129 precursor 
DEFB116               0.034   beta-defensin 116 
DEFB134               0.026   beta-defensin 134 
LOC100287066          0.026   PREDICTED: hypothetical protein XP_002342880 
LOC100128174          0.022   PREDICTED: hypothetical protein 
LOC100133790          0.022   PREDICTED: intestinal mucin-like, partial 
LOC100128174          0.022   PREDICTED: similar to defensin, beta 131 
CEP350                0.022   centrosome-associated protein 350 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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