Guide to the Human Genome
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Name: DEFB106A Sequence: fasta or formatted (65aa) NCBI GI: 22748611
Description:

defensin, beta 106A precursor

Referenced in:

Additional Host Defense Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2          4           1
 C cysteine           10.8          7           2
 D aspartate           3.1          2           1
 E glutamate           4.6          3           2
 F phenylalanine      10.8          7           2
 G glycine             4.6          3           1
 H histidine           0.0          0           0
 I isoleucine          6.2          4           2
 K lysine             12.3          8           1
 L leucine            12.3          8           1
 M methionine          1.5          1           1
 N asparagine          7.7          5           2
 P proline             3.1          2           1
 Q glutamine           3.1          2           1
 R arginine            3.1          2           1
 S serine              3.1          2           1
 T threonine           6.2          4           1
 V valine              1.5          1           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   defensin, beta 106A precursor 
DEFB106B              1.000   defensin, beta 106B precursor 
LOC100133128          0.121   PREDICTED: hypothetical protein 
DEFB108B              0.121   beta-defensin 108B 
LOC100133128          0.103   PREDICTED: hypothetical protein 
LOC100133128          0.103   PREDICTED: hypothetical protein 
DEFB135               0.086   beta-defensin 135 
DEFB105A              0.086   defensin, beta 105A precursor 
DEFB105B              0.086   defensin, beta 105B precursor 
LOC100287535          0.086   PREDICTED: hypothetical protein XP_002343194 
DEFB134               0.086   beta-defensin 134 
DEFB125               0.086   defensin, beta 125 preproprotein 
DEFB114               0.086   beta-defensin 114 
DEFB111               0.078   beta-defensin 111 
LOC100286963          0.069   PREDICTED: hypothetical protein XP_002342858 
LOC100287106          0.069   PREDICTED: hypothetical protein XP_002342470 
DEFB131               0.069   defensin, beta 131 
LOC100287066          0.069   PREDICTED: hypothetical protein XP_002342880 
LOC100128174          0.060   PREDICTED: hypothetical protein 
DEFB133               0.060   PREDICTED: defensin, beta 133 
LOC100293245          0.060   PREDICTED: similar to beta-defensin 130 
LOC100128174          0.060   PREDICTED: similar to defensin, beta 131 
DEFB133               0.060   PREDICTED: defensin, beta 133 
LOC100290863          0.060   PREDICTED: hypothetical protein XP_002346650 
LOC100133267          0.060   PREDICTED: similar to beta-defensin 130 
DEFB133               0.060   PREDICTED: beta-defensin 133 
LOC100288554          0.060   PREDICTED: hypothetical protein XP_002342487 
DEFB130               0.060   beta-defensin 130 
GJB2                  0.060   gap junction protein beta 2 
DEFB110               0.060   beta-defensin 110 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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